FFCP PHASE1:Mm9::chr3:123393659..123393718,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=83398|HGNC=|MCL_coexpression_id=39|UniProt=E9PZJ4|association_with_transcript=16bp_to_ENSMUST00000154668_5end|description=CAGE_peak_1_at_Ndst3_5end|id=chr3:123393659..123393718,-|ontology_enrichment_celltype=CL:0000540!3.80e-13!33;CL:0000047!3.80e-13!33;CL:0000031!3.80e-13!33;CL:0000404!3.80e-13!33;CL:0000221!7.69e-11!44;CL:0000133!7.69e-11!44;CL:0002319!9.19e-11!43;CL:0000393!9.86e-11!39;CL:0000211!9.86e-11!39;CL:0000117!1.08e-10!23;CL:0000337!1.08e-10!23;CL:0000055!1.42e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.89e-15,33;CL:0000047,1.89e-15,33;CL:0000031,1.89e-15,33;CL:0000404,1.89e-15,33;CL:0000117,3.92e-13,23;CL:0000337,3.92e-13,23;CL:0000393,5.05e-13,39;CL:0000211,5.05e-13,39;CL:0000221,2.46e-12,44;CL:0000133,2.46e-12,44;CL:0002319,3.12e-12,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.94e-25!75;UBERON:0001016!3.94e-25!75;UBERON:0004121!2.34e-24!102;UBERON:0000924!2.34e-24!102;UBERON:0006601!2.34e-24!102;UBERON:0001017!1.05e-23!73;UBERON:0005743!1.05e-23!73;UBERON:0002346!7.09e-21!71;UBERON:0003075!7.09e-21!71;UBERON:0007284!7.09e-21!71;UBERON:0001049!8.56e-19!52;UBERON:0005068!8.56e-19!52;UBERON:0006241!8.56e-19!52;UBERON:0007135!8.56e-19!52;UBERON:0000033!3.80e-18!63;UBERON:0003056!3.88e-17!49;UBERON:0000955!1.47e-16!50;UBERON:0006238!1.47e-16!50;UBERON:0002616!5.26e-16!49;UBERON:0002020!1.14e-15!34;UBERON:0003080!3.55e-14!40;UBERON:0002780!1.55e-13!39;UBERON:0001890!1.55e-13!39;UBERON:0006240!1.55e-13!39;UBERON:0002791!7.70e-13!29;UBERON:0003528!7.70e-13!29;UBERON:0001893!7.70e-13!29;UBERON:0000956!6.36e-10!21;UBERON:0001869!6.36e-10!21;UBERON:0000203!6.36e-10!21;UBERON:0002619!3.21e-08!17;UBERON:0002021!6.39e-08!10;UBERON:0000411!6.39e-08!10;UBERON:0001950!6.39e-08!10;UBERON:0000468!3.23e-07!333;UBERON:0007811!5.12e-07!86;UBERON:0000153!5.34e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.54e-28,95;UBERON:0000924,1.54e-28,95;UBERON:0006601,1.54e-28,95;UBERON:0001016,3.50e-28,75;UBERON:0001017,1.92e-26,73;UBERON:0002346,6.05e-26,64;UBERON:0003075,6.05e-26,64;UBERON:0007284,6.05e-26,64;UBERON:0010371,2.29e-23,73;UBERON:0000073,2.27e-21,54;UBERON:0001049,3.18e-21,52;UBERON:0005068,3.18e-21,52;UBERON:0006241,3.18e-21,52;UBERON:0007135,3.18e-21,52;UBERON:0002020,1.75e-19,34;UBERON:0003056,7.79e-19,49;UBERON:0000955,1.19e-17,47;UBERON:0006238,1.19e-17,47;UBERON:0002616,5.61e-17,46;UBERON:0003528,6.86e-16,29;UBERON:0002791,6.86e-16,29;UBERON:0001893,6.86e-16,29;UBERON:0003080,1.18e-15,40;UBERON:0002780,7.14e-15,39;UBERON:0001890,7.14e-15,39;UBERON:0006240,7.14e-15,39;UBERON:0010314,9.67e-13,92;UBERON:0000956,3.41e-12,21;UBERON:0001869,3.41e-12,21;UBERON:0000203,3.41e-12,21;UBERON:0002619,4.88e-10,17;UBERON:0002021,1.26e-09,10;UBERON:0000411,1.26e-09,10;UBERON:0001950,1.26e-09,10|phase1_expression=0.960893082628764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59233766815777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7697299954627,1.52065396829272,0,0,0.436050312760893,0,0.194429899074283,0.139986421625363,0,0,0,0,0.257259436035947,0,0,5.86717736492834,10.0508286061686,6.97214543856797,0,0,0,0,0,0.299600110518405,1.15265491596466,3.7328260431052,3.37514845829227,2.52389953621658,3.99911378165325,3.97563373712904,5.14461356702807,5.75072826109418,2.75765635983006,2.20231761998777,2.42605942361857,2.15049146558741,3.95658863190582,4.48289453651807,1.04182674111352,3.35019598801657,3.37657566019008,3.36156145108982,7.66034322231536,6.83384067835694,5.03278503728312,7.79979791331796,7.85944225110569,0,0,0,0,0,0,0.983110940922263,0,0,0,1.12674735821344,0,0,0,0,0,0,0.91347103775248,0.776813650941515,0.29688427812965,0.520455980298408,0.304465478312141,0.461230994512117,0.301445281105245,0.587943535678524,0,0,0.722996784599558,0,0.161766849947409,0,0,1.86391761218122,29.5708604981663,45.8688287921467,0.255457055208591,0,0,0,8.08869452786043,3.20250421973039,4.27224797183739,18.0777292999968,16.8772201838018,5.61027720310812,6.16516799657479,1.62942982160506,0,0,1.68353484709179,0.520481771850815,1.37941262660084,3.06105620669094,3.61691562805716,5.3748834329549,6.02134485338794,4.68508622798644,3.3631438196072,0.215567992932842,0.567318240503458,0.351902248327898,0,0.834141747676794,0.696504333044333,3.49829631893504,0.796137067273973,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.308534225774757,0,0.268273401399619,0.583826711835847,1.15191894939436,0.820837320395476,0.891756905004413,0.146199987425332,0,0,16.1923260394378,2.16099685996497,0,0,0.639864751605702,1.16118335930219,1.15980715189884,2.42020229548011,1.77902435075896,0.760902504450237,0.949058123089023,0.988193728344065,1.25667604400135,1.98956472041151,0.974820435595601,0,0.432276099749388,0.398282546508734,0.379335801906163,0.799739588268102,3.38123207019241,1.01825663922657,0,0.771494018793504,1.07502113111237,0.442830443938806,0.784993639206874,0.740382983530803,0,0,0.589676985339609,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0.179397413521912,0,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| ||
|EntrezGene=83398 | |||
|HGNC= | |||
|MCL_coexpression_id=39 | |||
|UniProt=E9PZJ4 | |||
|association_with_transcript=16bp_to_ENSMUST00000154668_5end | |||
|description=CAGE_peak_1_at_Ndst3_5end | |||
|id=chr3:123393659..123393718,- | |||
|ontology_enrichment_celltype=CL:0000540!3.80e-13!33;CL:0000047!3.80e-13!33;CL:0000031!3.80e-13!33;CL:0000404!3.80e-13!33;CL:0000221!7.69e-11!44;CL:0000133!7.69e-11!44;CL:0002319!9.19e-11!43;CL:0000393!9.86e-11!39;CL:0000211!9.86e-11!39;CL:0000117!1.08e-10!23;CL:0000337!1.08e-10!23;CL:0000055!1.42e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.89e-15,33;CL:0000047,1.89e-15,33;CL:0000031,1.89e-15,33;CL:0000404,1.89e-15,33;CL:0000117,3.92e-13,23;CL:0000337,3.92e-13,23;CL:0000393,5.05e-13,39;CL:0000211,5.05e-13,39;CL:0000221,2.46e-12,44;CL:0000133,2.46e-12,44;CL:0002319,3.12e-12,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.94e-25!75;UBERON:0001016!3.94e-25!75;UBERON:0004121!2.34e-24!102;UBERON:0000924!2.34e-24!102;UBERON:0006601!2.34e-24!102;UBERON:0001017!1.05e-23!73;UBERON:0005743!1.05e-23!73;UBERON:0002346!7.09e-21!71;UBERON:0003075!7.09e-21!71;UBERON:0007284!7.09e-21!71;UBERON:0001049!8.56e-19!52;UBERON:0005068!8.56e-19!52;UBERON:0006241!8.56e-19!52;UBERON:0007135!8.56e-19!52;UBERON:0000033!3.80e-18!63;UBERON:0003056!3.88e-17!49;UBERON:0000955!1.47e-16!50;UBERON:0006238!1.47e-16!50;UBERON:0002616!5.26e-16!49;UBERON:0002020!1.14e-15!34;UBERON:0003080!3.55e-14!40;UBERON:0002780!1.55e-13!39;UBERON:0001890!1.55e-13!39;UBERON:0006240!1.55e-13!39;UBERON:0002791!7.70e-13!29;UBERON:0003528!7.70e-13!29;UBERON:0001893!7.70e-13!29;UBERON:0000956!6.36e-10!21;UBERON:0001869!6.36e-10!21;UBERON:0000203!6.36e-10!21;UBERON:0002619!3.21e-08!17;UBERON:0002021!6.39e-08!10;UBERON:0000411!6.39e-08!10;UBERON:0001950!6.39e-08!10;UBERON:0000468!3.23e-07!333;UBERON:0007811!5.12e-07!86;UBERON:0000153!5.34e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.54e-28,95;UBERON:0000924,1.54e-28,95;UBERON:0006601,1.54e-28,95;UBERON:0001016,3.50e-28,75;UBERON:0001017,1.92e-26,73;UBERON:0002346,6.05e-26,64;UBERON:0003075,6.05e-26,64;UBERON:0007284,6.05e-26,64;UBERON:0010371,2.29e-23,73;UBERON:0000073,2.27e-21,54;UBERON:0001049,3.18e-21,52;UBERON:0005068,3.18e-21,52;UBERON:0006241,3.18e-21,52;UBERON:0007135,3.18e-21,52;UBERON:0002020,1.75e-19,34;UBERON:0003056,7.79e-19,49;UBERON:0000955,1.19e-17,47;UBERON:0006238,1.19e-17,47;UBERON:0002616,5.61e-17,46;UBERON:0003528,6.86e-16,29;UBERON:0002791,6.86e-16,29;UBERON:0001893,6.86e-16,29;UBERON:0003080,1.18e-15,40;UBERON:0002780,7.14e-15,39;UBERON:0001890,7.14e-15,39;UBERON:0006240,7.14e-15,39;UBERON:0010314,9.67e-13,92;UBERON:0000956,3.41e-12,21;UBERON:0001869,3.41e-12,21;UBERON:0000203,3.41e-12,21;UBERON:0002619,4.88e-10,17;UBERON:0002021,1.26e-09,10;UBERON:0000411,1.26e-09,10;UBERON:0001950,1.26e-09,10 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59233766815777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7697299954627,1.52065396829272,0,0,0.436050312760893,0,0.194429899074283,0.139986421625363,0,0,0,0,0.257259436035947,0,0,5.86717736492834,10.0508286061686,6.97214543856797,0,0,0,0,0,0.299600110518405,1.15265491596466,3.7328260431052,3.37514845829227,2.52389953621658,3.99911378165325,3.97563373712904,5.14461356702807,5.75072826109418,2.75765635983006,2.20231761998777,2.42605942361857,2.15049146558741,3.95658863190582,4.48289453651807,1.04182674111352,3.35019598801657,3.37657566019008,3.36156145108982,7.66034322231536,6.83384067835694,5.03278503728312,7.79979791331796,7.85944225110569,0,0,0,0,0,0,0.983110940922263,0,0,0,1.12674735821344,0,0,0,0,0,0,0.91347103775248,0.776813650941515,0.29688427812965,0.520455980298408,0.304465478312141,0.461230994512117,0.301445281105245,0.587943535678524,0,0,0.722996784599558,0,0.161766849947409,0,0,1.86391761218122,29.5708604981663,45.8688287921467,0.255457055208591,0,0,0,8.08869452786043,3.20250421973039,4.27224797183739,18.0777292999968,16.8772201838018,5.61027720310812,6.16516799657479,1.62942982160506,0,0,1.68353484709179,0.520481771850815,1.37941262660084,3.06105620669094,3.61691562805716,5.3748834329549,6.02134485338794,4.68508622798644,3.3631438196072,0.215567992932842,0.567318240503458,0.351902248327898,0,0.834141747676794,0.696504333044333,3.49829631893504,0.796137067273973,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.308534225774757,0,0.268273401399619,0.583826711835847,1.15191894939436,0.820837320395476,0.891756905004413,0.146199987425332,0,0,16.1923260394378,2.16099685996497,0,0,0.639864751605702,1.16118335930219,1.15980715189884,2.42020229548011,1.77902435075896,0.760902504450237,0.949058123089023,0.988193728344065,1.25667604400135,1.98956472041151,0.974820435595601,0,0.432276099749388,0.398282546508734,0.379335801906163,0.799739588268102,3.38123207019241,1.01825663922657,0,0.771494018793504,1.07502113111237,0.442830443938806,0.784993639206874,0.740382983530803,0,0,0.589676985339609,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0.179397413521912,0,0,0.189491411770485,0.325929952884052,0.169745085775188,0,0,0.714130922658041,0.195133647857799,0.315270288212382,0.44292937929755,0,0,0.172684981865896,0,0,0,0.491764273019036,0,4.17431533968259,2.93029216480508,0.163934945376675,0,2.83957397474631,1.17131623288992,4.73931475012158,1.91175038362042,3.7875774594007,3.67999490025482,3.23848561339915,2.33804686329049,1.97643888973262,4.81981974632711,1.56134093729095,2.67098405500883,3.90928702448583,3.79431282836832,0,1.21390318077491,0.302323556964751,0.565815239267694,0.295301892880773,0.307435147943927,0.775284879504663,0.727067458955011,1.06949213515416,0.316036757935816,0,0,3.74483566329167,0.540183282093931,0.258717367565509,1.28602221018955,0.354680467284547,1.07021290561242,1.48094118541909,0.608929898229199,0,0,0,0,9.52640117505843,3.37752379597673,0.835606408021955,0.656563598980245,0,5.19190845629427,0,0.206386867963223,0,0,0,0.228778173206523,0,0,0,0,0.316335993581135,3.65975040828328,2.70013352054503,1.88179466413022,1.52853794622324,1.34864346384821,1.07449492442937,0.523511883968059,0.518459893167171,0,0,0.299033092087958,0,0.194451188344048,0.387479470433193,0.506868376472335,0.117357238645754,0.2604087696879,0.104859344425711,0.241584120826006,0,0,0.202725215290164,0,0,0.179026695667481,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0.375364950902364,2.19781949120718,0.428736758158132,0,7.34177395402186,13.8097570952153,8.59343270159095,4.46818274093588,8.90607275701835,7.55393897389701,6.75022500231806,14.8605997063993,12.2348450425735,11.39072685854,0.93408612825759,6.3843979744165,3.92687293234509,3.16038732188782,1.04806581313991,1.65459157605013,3.33370091702423,1.85431551515005,2.56735367673452,3.28506375292937,5.57654459758527,1.88626341386076,3.37109426891577,3.07320731543373,2.98664438569189,2.38146845641537,1.73826488917283,0.964546102318525,3.29668720642645,2.20798380201596,2.74295401908332,2.66213709239006,2.14592570952589,2.47088908274958,2.54095327121393,2.11536519729191,2.74391959309159,2.89376682581627,3.25929873230068,3.92799590160417,2.60997039873183,2.26560309463796,3.6830793885272,2.94379998253335,2.89359916471712,2.99772693525535,3.04111090979031,3.00819475667618,0.765153328275374,0.882365676478062,0.695603506861264 | |||
|short_description=p1@Ndst3 | |||
}} |
Revision as of 01:26, 14 September 2013
Short description: | p1@Ndst3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ndst3_5end |
Coexpression cluster: | MCL_coexpression_mm9:39 |
Association with transcript: | 16bp_to_ENSMUST00000154668_5end |
EntrezGene: | Ndst3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.89e-15 | 33 |
neuronal stem cell | 1.89e-15 | 33 |
neuroblast | 1.89e-15 | 33 |
electrically signaling cell | 1.89e-15 | 33 |
CNS neuron (sensu Vertebrata) | 3.92e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.92e-13 | 23 |
electrically responsive cell | 5.05e-13 | 39 |
electrically active cell | 5.05e-13 | 39 |
ectodermal cell | 2.46e-12 | 44 |
neurectodermal cell | 2.46e-12 | 44 |
neural cell | 3.12e-12 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.54e-28 | 95 |
ectoderm | 1.54e-28 | 95 |
presumptive ectoderm | 1.54e-28 | 95 |
nervous system | 3.50e-28 | 75 |
central nervous system | 1.92e-26 | 73 |
neurectoderm | 6.05e-26 | 64 |
neural plate | 6.05e-26 | 64 |
presumptive neural plate | 6.05e-26 | 64 |
ecto-epithelium | 2.29e-23 | 73 |
regional part of nervous system | 2.27e-21 | 54 |
neural tube | 3.18e-21 | 52 |
neural rod | 3.18e-21 | 52 |
future spinal cord | 3.18e-21 | 52 |
neural keel | 3.18e-21 | 52 |
gray matter | 1.75e-19 | 34 |
pre-chordal neural plate | 7.79e-19 | 49 |
brain | 1.19e-17 | 47 |
future brain | 1.19e-17 | 47 |
regional part of brain | 5.61e-17 | 46 |
brain grey matter | 6.86e-16 | 29 |
regional part of telencephalon | 6.86e-16 | 29 |
telencephalon | 6.86e-16 | 29 |
anterior neural tube | 1.18e-15 | 40 |
regional part of forebrain | 7.14e-15 | 39 |
forebrain | 7.14e-15 | 39 |
future forebrain | 7.14e-15 | 39 |
structure with developmental contribution from neural crest | 9.67e-13 | 92 |
cerebral cortex | 3.41e-12 | 21 |
cerebral hemisphere | 3.41e-12 | 21 |
pallium | 3.41e-12 | 21 |
regional part of cerebral cortex | 4.88e-10 | 17 |
occipital lobe | 1.26e-09 | 10 |
visual cortex | 1.26e-09 | 10 |
neocortex | 1.26e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.