FFCP PHASE1:Mm9::chr3:34548909..34548927,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20674|HGNC=|MCL_coexpression_id=3407|UniProt=Q60I23,P48432,Q3V2B6|association_with_transcript=0bp_to_ENSMUST00000099151,NM_011443,uc008oxu.1_5end|description=CAGE_peak_1_at_Sox2_5end|id=chr3:34548909..34548927,+|ontology_enrichment_celltype=CL:0000221!5.86e-24!44;CL:0000133!5.86e-24!44;CL:0002319!3.78e-23!43;CL:0000055!2.40e-18!50;CL:0000540!1.09e-16!33;CL:0000047!1.09e-16!33;CL:0000031!1.09e-16!33;CL:0000404!1.09e-16!33;CL:0000393!3.51e-13!39;CL:0000211!3.51e-13!39;CL:0000117!4.56e-12!23;CL:0000337!4.56e-12!23;CL:0002321!9.59e-10!70;CL:0000220!9.59e-10!70;CL:0000333!2.36e-07!10;CL:0000095!2.36e-07!10;CL:0000243!2.36e-07!10;CL:0000123!2.36e-07!10;CL:0000125!2.36e-07!10;CL:0000030!2.36e-07!10;CL:0000339!2.36e-07!10|ontology_enrichment_celltype_v019_2=CL:0000221,2.24e-26,44;CL:0000133,2.24e-26,44;CL:0002319,1.77e-25,43;CL:0000540,2.56e-18,33;CL:0000047,2.56e-18,33;CL:0000031,2.56e-18,33;CL:0000404,2.56e-18,33;CL:0000393,6.59e-15,39;CL:0000211,6.59e-15,39;CL:0000117,3.38e-13,23;CL:0000337,3.38e-13,23;CL:0002321,8.13e-13,70;CL:0000333,5.59e-08,10;CL:0000095,5.59e-08,10;CL:0000243,5.59e-08,10;CL:0000123,5.59e-08,10;CL:0000125,5.59e-08,10;CL:0000030,5.59e-08,10;CL:0000339,5.59e-08,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.45e-36!75;UBERON:0001016!7.45e-36!75;UBERON:0004121!1.94e-35!102;UBERON:0000924!1.94e-35!102;UBERON:0006601!1.94e-35!102;UBERON:0001017!3.88e-34!73;UBERON:0005743!3.88e-34!73;UBERON:0000033!4.11e-27!63;UBERON:0002346!7.77e-26!71;UBERON:0003075!7.77e-26!71;UBERON:0007284!7.77e-26!71;UBERON:0001049!2.76e-22!52;UBERON:0005068!2.76e-22!52;UBERON:0006241!2.76e-22!52;UBERON:0007135!2.76e-22!52;UBERON:0003056!5.48e-22!49;UBERON:0000955!1.35e-20!50;UBERON:0006238!1.35e-20!50;UBERON:0002616!3.52e-20!49;UBERON:0003080!1.52e-17!40;UBERON:0002780!2.72e-17!39;UBERON:0001890!2.72e-17!39;UBERON:0006240!2.72e-17!39;UBERON:0002020!5.50e-15!34;UBERON:0007811!1.21e-13!86;UBERON:0002791!1.44e-12!29;UBERON:0003528!1.44e-12!29;UBERON:0001893!1.44e-12!29;UBERON:0000153!2.68e-11!94;UBERON:0000956!8.02e-09!21;UBERON:0001869!8.02e-09!21;UBERON:0000203!8.02e-09!21;UBERON:0002619!2.40e-07!17;UBERON:0000020!6.28e-07!12;UBERON:0001032!6.28e-07!12;UBERON:0004456!6.28e-07!12;UBERON:0004111!8.13e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.88e-41,95;UBERON:0000924,3.88e-41,95;UBERON:0006601,3.88e-41,95;UBERON:0001016,1.44e-39,75;UBERON:0001017,1.16e-37,73;UBERON:0002346,3.89e-31,64;UBERON:0003075,3.89e-31,64;UBERON:0007284,3.89e-31,64;UBERON:0010371,6.17e-28,73;UBERON:0000073,4.03e-25,54;UBERON:0001049,1.60e-24,52;UBERON:0005068,1.60e-24,52;UBERON:0006241,1.60e-24,52;UBERON:0007135,1.60e-24,52;UBERON:0003056,3.43e-24,49;UBERON:0000955,1.04e-21,47;UBERON:0006238,1.04e-21,47;UBERON:0002616,2.97e-21,46;UBERON:0003080,2.89e-19,40;UBERON:0002780,5.51e-19,39;UBERON:0001890,5.51e-19,39;UBERON:0006240,5.51e-19,39;UBERON:0010314,2.11e-18,92;UBERON:0002020,1.98e-16,34;UBERON:0003528,9.39e-14,29;UBERON:0002791,9.39e-14,29;UBERON:0001893,9.39e-14,29;UBERON:0000956,1.32e-09,21;UBERON:0001869,1.32e-09,21;UBERON:0000203,1.32e-09,21;UBERON:0011216,6.19e-09,194;UBERON:0002619,5.69e-08,17;UBERON:0000020,1.65e-07,12;UBERON:0001032,1.65e-07,12;UBERON:0004456,1.65e-07,12;UBERON:0000033,2.33e-07,13;UBERON:0000010,3.86e-07,11|phase1_expression=42.9198910240848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27268398936633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01434908760924,1.31790010585369,2.38610777810186,6.25913075478431,103.343924124332,102.373761154264,76.2165204371191,42.4158857524848,116.439577135627,0,0,0,0,0,0,46.1281530759883,39.6743234454025,39.2975470173831,12.876092218627,8.00365316500025,0,0,0.7104801149461,88.9812328239662,179.429948585166,27.996195323289,23.3560273313825,25.4493203235172,35.1350710816678,36.8850463389195,101.912344946842,116.643938229194,96.5179725940522,8.8092704799511,15.7055425844781,19.6616362567992,124.632541905033,108.59583295606,142.209350161995,17.0301629390842,24.7615548413939,16.8078072554491,27.6950870345248,37.1590086885659,27.4007185363192,111.999039939779,133.988376069331,0,0,0,0,0,0,2.10666630197628,0,0,0,325.066612844579,0,0,0,31.391200946626,34.4569417046134,38.9253822661383,1.02765491747154,0,0.29688427812965,4.51061849591953,1.52232739156071,1.38369298353635,0.301445281105245,0.705532242814229,0,0,0.144599356919912,0,0.647067399789637,0,0,0,15.517382241612,14.6612694769419,0,0,0,0,13.3313669070292,9.15001205637253,47.6229994507756,17.5562563394199,15.5986428971502,23.0644729461112,22.2270530402828,0.101839363850316,0,0,4.62972082950243,64.9301010383892,41.8421830068921,54.0186389416048,35.7170418270645,50.4150458711339,46.1209393025459,46.8508622798644,7.24369438069244,0,0.567318240503458,0.703804496655795,0.219195732427575,0,0,1.02891068203972,4.97585667046233,0,0,0,0.621377317606506,1.17263029990548,0,1.18372367792605,0,0.771335564436891,0.232533944750408,0.536546802799238,0.116765342367169,0.1645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| ||
|EntrezGene=20674 | |||
|HGNC= | |||
|MCL_coexpression_id=3407 | |||
|UniProt=Q60I23,P48432,Q3V2B6 | |||
|association_with_transcript=0bp_to_ENSMUST00000099151,NM_011443,uc008oxu.1_5end | |||
|description=CAGE_peak_1_at_Sox2_5end | |||
|id=chr3:34548909..34548927,+ | |||
|ontology_enrichment_celltype=CL:0000221!5.86e-24!44;CL:0000133!5.86e-24!44;CL:0002319!3.78e-23!43;CL:0000055!2.40e-18!50;CL:0000540!1.09e-16!33;CL:0000047!1.09e-16!33;CL:0000031!1.09e-16!33;CL:0000404!1.09e-16!33;CL:0000393!3.51e-13!39;CL:0000211!3.51e-13!39;CL:0000117!4.56e-12!23;CL:0000337!4.56e-12!23;CL:0002321!9.59e-10!70;CL:0000220!9.59e-10!70;CL:0000333!2.36e-07!10;CL:0000095!2.36e-07!10;CL:0000243!2.36e-07!10;CL:0000123!2.36e-07!10;CL:0000125!2.36e-07!10;CL:0000030!2.36e-07!10;CL:0000339!2.36e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.24e-26,44;CL:0000133,2.24e-26,44;CL:0002319,1.77e-25,43;CL:0000540,2.56e-18,33;CL:0000047,2.56e-18,33;CL:0000031,2.56e-18,33;CL:0000404,2.56e-18,33;CL:0000393,6.59e-15,39;CL:0000211,6.59e-15,39;CL:0000117,3.38e-13,23;CL:0000337,3.38e-13,23;CL:0002321,8.13e-13,70;CL:0000333,5.59e-08,10;CL:0000095,5.59e-08,10;CL:0000243,5.59e-08,10;CL:0000123,5.59e-08,10;CL:0000125,5.59e-08,10;CL:0000030,5.59e-08,10;CL:0000339,5.59e-08,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.45e-36!75;UBERON:0001016!7.45e-36!75;UBERON:0004121!1.94e-35!102;UBERON:0000924!1.94e-35!102;UBERON:0006601!1.94e-35!102;UBERON:0001017!3.88e-34!73;UBERON:0005743!3.88e-34!73;UBERON:0000033!4.11e-27!63;UBERON:0002346!7.77e-26!71;UBERON:0003075!7.77e-26!71;UBERON:0007284!7.77e-26!71;UBERON:0001049!2.76e-22!52;UBERON:0005068!2.76e-22!52;UBERON:0006241!2.76e-22!52;UBERON:0007135!2.76e-22!52;UBERON:0003056!5.48e-22!49;UBERON:0000955!1.35e-20!50;UBERON:0006238!1.35e-20!50;UBERON:0002616!3.52e-20!49;UBERON:0003080!1.52e-17!40;UBERON:0002780!2.72e-17!39;UBERON:0001890!2.72e-17!39;UBERON:0006240!2.72e-17!39;UBERON:0002020!5.50e-15!34;UBERON:0007811!1.21e-13!86;UBERON:0002791!1.44e-12!29;UBERON:0003528!1.44e-12!29;UBERON:0001893!1.44e-12!29;UBERON:0000153!2.68e-11!94;UBERON:0000956!8.02e-09!21;UBERON:0001869!8.02e-09!21;UBERON:0000203!8.02e-09!21;UBERON:0002619!2.40e-07!17;UBERON:0000020!6.28e-07!12;UBERON:0001032!6.28e-07!12;UBERON:0004456!6.28e-07!12;UBERON:0004111!8.13e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.88e-41,95;UBERON:0000924,3.88e-41,95;UBERON:0006601,3.88e-41,95;UBERON:0001016,1.44e-39,75;UBERON:0001017,1.16e-37,73;UBERON:0002346,3.89e-31,64;UBERON:0003075,3.89e-31,64;UBERON:0007284,3.89e-31,64;UBERON:0010371,6.17e-28,73;UBERON:0000073,4.03e-25,54;UBERON:0001049,1.60e-24,52;UBERON:0005068,1.60e-24,52;UBERON:0006241,1.60e-24,52;UBERON:0007135,1.60e-24,52;UBERON:0003056,3.43e-24,49;UBERON:0000955,1.04e-21,47;UBERON:0006238,1.04e-21,47;UBERON:0002616,2.97e-21,46;UBERON:0003080,2.89e-19,40;UBERON:0002780,5.51e-19,39;UBERON:0001890,5.51e-19,39;UBERON:0006240,5.51e-19,39;UBERON:0010314,2.11e-18,92;UBERON:0002020,1.98e-16,34;UBERON:0003528,9.39e-14,29;UBERON:0002791,9.39e-14,29;UBERON:0001893,9.39e-14,29;UBERON:0000956,1.32e-09,21;UBERON:0001869,1.32e-09,21;UBERON:0000203,1.32e-09,21;UBERON:0011216,6.19e-09,194;UBERON:0002619,5.69e-08,17;UBERON:0000020,1.65e-07,12;UBERON:0001032,1.65e-07,12;UBERON:0004456,1.65e-07,12;UBERON:0000033,2.33e-07,13;UBERON:0000010,3.86e-07,11 | |||
|phase1_expression=42.9198910240848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27268398936633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01434908760924,1.31790010585369,2.38610777810186,6.25913075478431,103.343924124332,102.373761154264,76.2165204371191,42.4158857524848,116.439577135627,0,0,0,0,0,0,46.1281530759883,39.6743234454025,39.2975470173831,12.876092218627,8.00365316500025,0,0,0.7104801149461,88.9812328239662,179.429948585166,27.996195323289,23.3560273313825,25.4493203235172,35.1350710816678,36.8850463389195,101.912344946842,116.643938229194,96.5179725940522,8.8092704799511,15.7055425844781,19.6616362567992,124.632541905033,108.59583295606,142.209350161995,17.0301629390842,24.7615548413939,16.8078072554491,27.6950870345248,37.1590086885659,27.4007185363192,111.999039939779,133.988376069331,0,0,0,0,0,0,2.10666630197628,0,0,0,325.066612844579,0,0,0,31.391200946626,34.4569417046134,38.9253822661383,1.02765491747154,0,0.29688427812965,4.51061849591953,1.52232739156071,1.38369298353635,0.301445281105245,0.705532242814229,0,0,0.144599356919912,0,0.647067399789637,0,0,0,15.517382241612,14.6612694769419,0,0,0,0,13.3313669070292,9.15001205637253,47.6229994507756,17.5562563394199,15.5986428971502,23.0644729461112,22.2270530402828,0.101839363850316,0,0,4.62972082950243,64.9301010383892,41.8421830068921,54.0186389416048,35.7170418270645,50.4150458711339,46.1209393025459,46.8508622798644,7.24369438069244,0,0.567318240503458,0.703804496655795,0.219195732427575,0,0,1.02891068203972,4.97585667046233,0,0,0,0.621377317606506,1.17263029990548,0,1.18372367792605,0,0.771335564436891,0.232533944750408,0.536546802799238,0.116765342367169,0.16455984991348,0,0.162137619091711,0,0,0,17.8746456279508,44.866410997368,0,0.264450566663544,3.41261200856374,3.25131340604614,0.644337306610467,0.605050573870028,1.11189021922435,0.760902504450237,0,0.164698954724011,0.251335208800269,0.596869416123452,0.38992817423824,0,0,0.199141273254367,0.189667900953082,0.114248512609729,0,0,0,0.0701358198903186,0,0,0,0,0,0.166845105716094,0.393117990226406,0,0,0,0.25462585178142,0.287696137450811,0,0,0,0.744281895337007,0.312037673114561,0,0,0,8.86815312799702,4.35830247072115,7.33342393989116,10.0149600607361,5.16318546234705,4.52266895092903,4.76087281772027,7.21994497073856,4.72905432318573,2.87904096543407,5.58091690301205,6.22680595919804,5.69860440157455,5.49666422609744,0,0,0,0,12.6834966090356,13.0104972117346,0,0,16.4064274096453,21.8645696806118,24.5582673415391,43.4923212273645,52.8032857575274,51.5199286035675,24.2886421004937,25.4262596382841,23.7172666767914,23.4564560987919,0,0,0.162886959353576,0,0,0.728341908464944,0.302323556964751,0,0,1.53717573971964,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,19.7454971337197,49.336739764579,49.1562998374467,41.1527107260657,26.7783752799833,28.1822731811271,27.6442354611563,29.2286351150015,0.23467170806371,0,0.882113592219848,0,1.29171541356724,1.5078231232039,0.477489376012546,0.164140899745061,0,16.6882771809459,0,1.03193433981611,0,0,0,0,0,0,0,8.59203556213602,17.3984796469624,21.7551829825728,31.2135434975006,33.2450390663005,27.2953204682722,28.0517840480427,18.7623344496513,11.2555055053133,0.129614973291793,4.97071450469541,0,11.5127740453864,8.76929999422617,0.194451188344048,0,0.168956125490778,0,0.13020438484395,0,0,0,0,0.202725215290164,0.924398614483445,0,0.358053391334963,0.198681354781265,0.240390899039938,0,0.403865799792591,0.228620419965,0,0.0974578807397524,0,0,24.2601510468276,40.6234294674538,37.5003920627608,24.8469232218836,1.54551675225752,0,0,1.2862102744744,0,11.2950368523413,12.889106622201,14.8952833494243,17.0134650520251,8.90607275701835,9.82012066606611,14.8504950050997,9.00642406448441,12.2348450425735,11.39072685854,40.0619161674922,11.1726964552289,14.5123564891014,10.9398022680732,8.17491334249131,6.61836630420051,4.66718128383392,5.35691148821125,3.20919209591815,4.04315538822076,6.08350319736575,4.52703219326583,6.55490552289177,6.40251524048693,6.43277252302869,6.66811167796303,5.56244764535306,6.55891349576597,6.59337441285291,6.32955356577908,6.17164654293748,6.03417740941747,8.82213902805088,6.83128158171944,5.92889096616583,6.59993941555077,5.67076715905595,4.47218509444333,5.70377278152619,3.92799590160417,4.50813068871862,5.71325997778268,6.13846564754534,6.50734732981057,6.94463799532109,21.9833308585392,6.78401664491684,6.66100267549725,0.765153328275374,1.32354851471709,2.08681052058379 | |||
|short_description=p1@Sox2 | |||
}} |
Revision as of 02:08, 14 September 2013
Short description: | p1@Sox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sox2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3407 |
Association with transcript: | 0bp_to_ENSMUST00000099151, NM_011443, uc008oxu.1_5end |
EntrezGene: | Sox2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.24e-26 | 44 |
neurectodermal cell | 2.24e-26 | 44 |
neural cell | 1.77e-25 | 43 |
neuron | 2.56e-18 | 33 |
neuronal stem cell | 2.56e-18 | 33 |
neuroblast | 2.56e-18 | 33 |
electrically signaling cell | 2.56e-18 | 33 |
electrically responsive cell | 6.59e-15 | 39 |
electrically active cell | 6.59e-15 | 39 |
CNS neuron (sensu Vertebrata) | 3.38e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.38e-13 | 23 |
embryonic cell | 8.13e-13 | 70 |
migratory neural crest cell | 5.59e-08 | 10 |
neuron associated cell | 5.59e-08 | 10 |
glial cell (sensu Vertebrata) | 5.59e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 5.59e-08 | 10 |
glial cell | 5.59e-08 | 10 |
glioblast | 5.59e-08 | 10 |
glioblast (sensu Vertebrata) | 5.59e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.