FFCP PHASE1:Mm9::chr4:16090758..16090772,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=192656|HGNC=|MCL_coexpression_id=122|UniProt=|association_with_transcript=17bp_to_ENSMUST00000129036_5end|description=CAGE_peak_3_at_Ripk2_5end|id=chr4:16090758..16090772,-|ontology_enrichment_celltype=CL:0000988!1.51e-07!32;CL:0002032!1.51e-07!32;CL:0000037!1.51e-07!32;CL:0000566!1.51e-07!32;CL:0000837!1.51e-07!32;CL:0000542!4.55e-07!13;CL:0000051!4.55e-07!13|ontology_enrichment_celltype_v019_2=CL:0000988,2.37e-14,32;CL:0002032,2.37e-14,32;CL:0000037,2.37e-14,32;CL:0000837,2.37e-14,32;CL:0000542,1.46e-10,13;CL:0000051,1.46e-10,13;CL:0000838,1.15e-09,12;CL:0002320,4.69e-09,46;CL:0000134,4.69e-09,46;CL:0000791,1.22e-08,9;CL:0000789,1.22e-08,9;CL:0002420,1.22e-08,9;CL:0002419,1.22e-08,9;CL:0000790,1.22e-08,9;CL:0000084,2.31e-08,11;CL:0000827,2.31e-08,11;CL:0002031,9.73e-08,25;CL:0000738,1.88e-07,17;CL:0002087,1.88e-07,17;CL:0000624,2.83e-07,8;CL:0000219,7.30e-07,54;CL:0000034,9.04e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!5.88e-08!45;UBERON:0003061!5.88e-08!45;UBERON:0002193!1.63e-07!48;UBERON:0004177!2.45e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.21e-12,48;UBERON:0002405,6.21e-12,48;UBERON:0002390,9.87e-12,45;UBERON:0003061,9.87e-12,45;UBERON:0002370,8.17e-10,23;UBERON:0000974,8.17e-10,23;UBERON:0004807,8.17e-10,23;UBERON:0005058,8.17e-10,23;UBERON:0003351,8.17e-10,23;UBERON:0009113,8.17e-10,23;UBERON:0003295,8.17e-10,23;UBERON:0009722,8.17e-10,23;UBERON:0005562,8.17e-10,23;UBERON:0007690,8.17e-10,23;UBERON:0004177,1.85e-09,29;UBERON:0005057,1.85e-09,29;UBERON:0006562,3.06e-09,24;UBERON:0003408,3.06e-09,24;UBERON:0001557,3.06e-09,24;UBERON:0001042,3.06e-09,24;UBERON:0008814,3.06e-09,24;UBERON:0009145,3.06e-09,24;UBERON:0002384,4.69e-09,46;UBERON:0000077,5.49e-08,35;UBERON:0000072,8.68e-08,27|phase1_expression=0.960893082628764,0.697950815278722,0.454999239389536,0.90739263392049,0.500895729946347,1.00727563147134,0.467225281191051,7.618276083053,3.09735188733667,3.5109678948299,0.68487187290202,0.638177271962691,3.25281386869291,3.93391810885488,0.999329285446988,1.01237633694913,0,5.20512572841092,3.29074640653773,2.12194825899015,0.255129870453209,1.09220046320974,0.522399578277871,0,0.22940928106717,0.57423196411502,1.29228598847722,0.430942465371778,0,0.504060259519861,0,0.635030673459631,0,0,0.288851619751275,0.166234645358492,0.612508068787107,0.837063261473815,1.5626706890476,1.0470474879476,0.588231488031014,0,0,0.251793635951155,0.304130793658544,0,0,0.65407546914134,0,0,0.55994568650145,0,4.02678254538567,4.35217285206807,4.36921938885203,2.05807548828758,0.573066879877513,1.03134418455488,1.21389876515759,0,0,0.338844532069132,0,0.449949858640699,0,0.7104801149461,0.599200221036809,0.384218305321555,0.829516898467821,0.405017814995072,1.68259969081106,0.285650984403804,0,0.61245399607477,0.287536413054709,0,1.10115880999389,0.638436690425939,0.614426133024974,0.527545150920775,0.182975287204819,0.52091337055676,0.279182999001381,0,0.15279824777681,0.589257170947335,0.427115042397309,1.1183966749518,0.454357159999104,0.302286240427142,0.579728977403356,0.860423876981386,0.679971333707751,0,0,0,0.280888840263504,0.681721290312231,0.259786004602869,1.06001872353102,0.704217098883403,0,0,0,0.649473123033642,0.253359865475099,0,0.34255163915718,5.95557132388495,0.148442139064825,0.520455980298408,0,0.461230994512117,0.301445281105245,0.352766121407114,0.376999773989026,0,0.578397427679647,0,0.161766849947409,1.54589062922275,0.484875253135222,0,0.292780797011547,0.83778682725382,0.255457055208591,2.03685711660064,1.79970819298022,2.41433431438823,0.149790639404823,1.37250180845588,0.251308704225729,0.173824320192276,0.767146371990992,0.62336413367868,0.324482526135515,0.611036183101898,0.622034853050465,0,0,0.520481771850815,0.459804208866946,1.0803727788321,0.60281927134286,0.95251098811859,0.768682321709099,0.562210347358373,0.517406741478031,0.215567992932842,0.756424320671277,0.879755620819744,1.53437012699302,1.11218899690239,0,0.411564272815887,0.199034266818493,2.80885274925294,2.83082697826187,1.98914449576915,0.207125772535502,0.234526059981096,0.36012412292203,0.473489471170421,0.787056926989615,0.154267112887378,0,0,0.700592054203017,0.16455984991348,0.820837320395476,0.324275238183423,0.292399974850665,0.658650345873152,0.671032093801859,0.841159794256509,0.617427674275707,0,0.528901133327089,1.2797295032114,0.696710015581316,0.128867461322093,1.00841762311671,0.444756087689741,0.380451252225118,0,0,0,0.198956472041151,0.38992817423824,0,0,0.199141273254367,0.189667900953082,0.114248512609729,1.1270773567308,0.203651327845314,0.387904974335251,0.280543279561274,0.569128834118316,0.147610147979602,0.470996183524124,0.123397163921801,0.296452627087149,0.166845105716094,0.196558995113203,0,0.608580364165509,0,0.50925170356284,0.287696137450811,0,0,0,0.372140947668503,0.312037673114561,0,0.538192240565737,0,0.184753190166605,0.757965647081939,0.651859905768103,0.169745085775188,0,0.33501251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| ||
|EntrezGene=192656 | |||
|HGNC= | |||
|MCL_coexpression_id=122 | |||
|UniProt= | |||
|association_with_transcript=17bp_to_ENSMUST00000129036_5end | |||
|description=CAGE_peak_3_at_Ripk2_5end | |||
|id=chr4:16090758..16090772,- | |||
|ontology_enrichment_celltype=CL:0000988!1.51e-07!32;CL:0002032!1.51e-07!32;CL:0000037!1.51e-07!32;CL:0000566!1.51e-07!32;CL:0000837!1.51e-07!32;CL:0000542!4.55e-07!13;CL:0000051!4.55e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.37e-14,32;CL:0002032,2.37e-14,32;CL:0000037,2.37e-14,32;CL:0000837,2.37e-14,32;CL:0000542,1.46e-10,13;CL:0000051,1.46e-10,13;CL:0000838,1.15e-09,12;CL:0002320,4.69e-09,46;CL:0000134,4.69e-09,46;CL:0000791,1.22e-08,9;CL:0000789,1.22e-08,9;CL:0002420,1.22e-08,9;CL:0002419,1.22e-08,9;CL:0000790,1.22e-08,9;CL:0000084,2.31e-08,11;CL:0000827,2.31e-08,11;CL:0002031,9.73e-08,25;CL:0000738,1.88e-07,17;CL:0002087,1.88e-07,17;CL:0000624,2.83e-07,8;CL:0000219,7.30e-07,54;CL:0000034,9.04e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.88e-08!45;UBERON:0003061!5.88e-08!45;UBERON:0002193!1.63e-07!48;UBERON:0004177!2.45e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.21e-12,48;UBERON:0002405,6.21e-12,48;UBERON:0002390,9.87e-12,45;UBERON:0003061,9.87e-12,45;UBERON:0002370,8.17e-10,23;UBERON:0000974,8.17e-10,23;UBERON:0004807,8.17e-10,23;UBERON:0005058,8.17e-10,23;UBERON:0003351,8.17e-10,23;UBERON:0009113,8.17e-10,23;UBERON:0003295,8.17e-10,23;UBERON:0009722,8.17e-10,23;UBERON:0005562,8.17e-10,23;UBERON:0007690,8.17e-10,23;UBERON:0004177,1.85e-09,29;UBERON:0005057,1.85e-09,29;UBERON:0006562,3.06e-09,24;UBERON:0003408,3.06e-09,24;UBERON:0001557,3.06e-09,24;UBERON:0001042,3.06e-09,24;UBERON:0008814,3.06e-09,24;UBERON:0009145,3.06e-09,24;UBERON:0002384,4.69e-09,46;UBERON:0000077,5.49e-08,35;UBERON:0000072,8.68e-08,27 | |||
|phase1_expression=0.960893082628764,0.697950815278722,0.454999239389536,0.90739263392049,0.500895729946347,1.00727563147134,0.467225281191051,7.618276083053,3.09735188733667,3.5109678948299,0.68487187290202,0.638177271962691,3.25281386869291,3.93391810885488,0.999329285446988,1.01237633694913,0,5.20512572841092,3.29074640653773,2.12194825899015,0.255129870453209,1.09220046320974,0.522399578277871,0,0.22940928106717,0.57423196411502,1.29228598847722,0.430942465371778,0,0.504060259519861,0,0.635030673459631,0,0,0.288851619751275,0.166234645358492,0.612508068787107,0.837063261473815,1.5626706890476,1.0470474879476,0.588231488031014,0,0,0.251793635951155,0.304130793658544,0,0,0.65407546914134,0,0,0.55994568650145,0,4.02678254538567,4.35217285206807,4.36921938885203,2.05807548828758,0.573066879877513,1.03134418455488,1.21389876515759,0,0,0.338844532069132,0,0.449949858640699,0,0.7104801149461,0.599200221036809,0.384218305321555,0.829516898467821,0.405017814995072,1.68259969081106,0.285650984403804,0,0.61245399607477,0.287536413054709,0,1.10115880999389,0.638436690425939,0.614426133024974,0.527545150920775,0.182975287204819,0.52091337055676,0.279182999001381,0,0.15279824777681,0.589257170947335,0.427115042397309,1.1183966749518,0.454357159999104,0.302286240427142,0.579728977403356,0.860423876981386,0.679971333707751,0,0,0,0.280888840263504,0.681721290312231,0.259786004602869,1.06001872353102,0.704217098883403,0,0,0,0.649473123033642,0.253359865475099,0,0.34255163915718,5.95557132388495,0.148442139064825,0.520455980298408,0,0.461230994512117,0.301445281105245,0.352766121407114,0.376999773989026,0,0.578397427679647,0,0.161766849947409,1.54589062922275,0.484875253135222,0,0.292780797011547,0.83778682725382,0.255457055208591,2.03685711660064,1.79970819298022,2.41433431438823,0.149790639404823,1.37250180845588,0.251308704225729,0.173824320192276,0.767146371990992,0.62336413367868,0.324482526135515,0.611036183101898,0.622034853050465,0,0,0.520481771850815,0.459804208866946,1.0803727788321,0.60281927134286,0.95251098811859,0.768682321709099,0.562210347358373,0.517406741478031,0.215567992932842,0.756424320671277,0.879755620819744,1.53437012699302,1.11218899690239,0,0.411564272815887,0.199034266818493,2.80885274925294,2.83082697826187,1.98914449576915,0.207125772535502,0.234526059981096,0.36012412292203,0.473489471170421,0.787056926989615,0.154267112887378,0,0,0.700592054203017,0.16455984991348,0.820837320395476,0.324275238183423,0.292399974850665,0.658650345873152,0.671032093801859,0.841159794256509,0.617427674275707,0,0.528901133327089,1.2797295032114,0.696710015581316,0.128867461322093,1.00841762311671,0.444756087689741,0.380451252225118,0,0,0,0.198956472041151,0.38992817423824,0,0,0.199141273254367,0.189667900953082,0.114248512609729,1.1270773567308,0.203651327845314,0.387904974335251,0.280543279561274,0.569128834118316,0.147610147979602,0.470996183524124,0.123397163921801,0.296452627087149,0.166845105716094,0.196558995113203,0,0.608580364165509,0,0.50925170356284,0.287696137450811,0,0,0,0.372140947668503,0.312037673114561,0,0.538192240565737,0,0.184753190166605,0.757965647081939,0.651859905768103,0.169745085775188,0,0.335012514883631,0.476087281772027,0.585400943573396,0.630540576424764,0.8858587585951,0.797273843287435,0.491589944147214,0.863424909329478,0.433947175744535,0,0,0,0.275936746304732,0,0,0.491804836130026,0.252470927204373,0.94652465824877,0,0,0.238968797952552,0.222798674082394,0,0.809621403349789,0.292255857911312,0.395287777946524,0.642642632843614,1.27746076687442,0.178065603667255,0.325773918707152,0.494910368917606,1.32745138339963,0.728341908464944,0.604647113929502,0,0.295301892880773,0,0.258428293168221,0,0.712994756769443,0,0,0,0,0.720244376125241,0.776152102696527,1.07168517515796,0,0.356737635204141,0.658196082408484,1.2178597964584,0.23467170806371,1.0591603543191,0.220528398054962,1.15420377059036,0.807322133479528,0.844380948994182,0.477489376012546,0.164140899745061,0,0.556275906031529,0.683483523191411,0.619160603889667,0.555583582109135,0.753473828018764,2.32380187125743,1.37266903923914,3.0596117398894,2.6590775941495,3.73139929271944,0,1.26534397432454,0.406638934253697,0.756037385752609,0,0.436725127492355,0.404593039154462,0.165306911450672,0,0.259229946583586,0,1.69107881605257,0.149516546043979,1.65458490457098,0.777804753376191,0.516639293910924,0.844780627453891,0.704143431874524,0.39061315453185,1.67774951081137,1.20792060413003,0.576060012515731,2.52808896502543,0.608175645870493,0.616265742988964,0.77952493786677,0.537080087002444,1.39076948346885,1.9231271923195,2.36303243479324,2.3222283488074,1.295515713135,1.81487133246313,1.94915761479505,2.88635524920988,2.92192255453922,0.226730383615211,0,0.0897138566094757,0.335769232728157,0.386379188064381,0.93841237725591,0.36630324853453,0.428736758158132,0,1.12950368523413,0.460325236507177,0,0.171853182343688,1.37016503954128,0,0,0,1.35942722695261,0,1.14166082342594,0.798049746802062,0.682934423016537,0.486213434136588,0,0.55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| |||
|short_description=p3@Ripk2 | |||
}} |
Revision as of 04:45, 14 September 2013
Short description: | p3@Ripk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ripk2_5end |
Coexpression cluster: | MCL_coexpression_mm9:122 |
Association with transcript: | 17bp_to_ENSMUST00000129036_5end |
EntrezGene: | Ripk2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.37e-14 | 32 |
hematopoietic oligopotent progenitor cell | 2.37e-14 | 32 |
hematopoietic stem cell | 2.37e-14 | 32 |
hematopoietic multipotent progenitor cell | 2.37e-14 | 32 |
lymphocyte | 1.46e-10 | 13 |
common lymphoid progenitor | 1.46e-10 | 13 |
lymphoid lineage restricted progenitor cell | 1.15e-09 | 12 |
connective tissue cell | 4.69e-09 | 46 |
mesenchymal cell | 4.69e-09 | 46 |
mature alpha-beta T cell | 1.22e-08 | 9 |
alpha-beta T cell | 1.22e-08 | 9 |
immature T cell | 1.22e-08 | 9 |
mature T cell | 1.22e-08 | 9 |
immature alpha-beta T cell | 1.22e-08 | 9 |
T cell | 2.31e-08 | 11 |
pro-T cell | 2.31e-08 | 11 |
hematopoietic lineage restricted progenitor cell | 9.73e-08 | 25 |
leukocyte | 1.88e-07 | 17 |
nongranular leukocyte | 1.88e-07 | 17 |
CD4-positive, alpha-beta T cell | 2.83e-07 | 8 |
motile cell | 7.30e-07 | 54 |
stem cell | 9.04e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.21e-12 | 48 |
immune system | 6.21e-12 | 48 |
hematopoietic system | 9.87e-12 | 45 |
blood island | 9.87e-12 | 45 |
thymus | 8.17e-10 | 23 |
neck | 8.17e-10 | 23 |
respiratory system epithelium | 8.17e-10 | 23 |
hemolymphoid system gland | 8.17e-10 | 23 |
pharyngeal epithelium | 8.17e-10 | 23 |
thymic region | 8.17e-10 | 23 |
pharyngeal gland | 8.17e-10 | 23 |
entire pharyngeal arch endoderm | 8.17e-10 | 23 |
thymus primordium | 8.17e-10 | 23 |
early pharyngeal endoderm | 8.17e-10 | 23 |
hemopoietic organ | 1.85e-09 | 29 |
immune organ | 1.85e-09 | 29 |
pharynx | 3.06e-09 | 24 |
gland of gut | 3.06e-09 | 24 |
upper respiratory tract | 3.06e-09 | 24 |
chordate pharynx | 3.06e-09 | 24 |
pharyngeal arch system | 3.06e-09 | 24 |
pharyngeal region of foregut | 3.06e-09 | 24 |
connective tissue | 4.69e-09 | 46 |
mixed endoderm/mesoderm-derived structure | 5.49e-08 | 35 |
segment of respiratory tract | 8.68e-08 | 27 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.