FFCP PHASE1:Mm9::chr5:33361483..33361514,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22629|HGNC=|MCL_coexpression_id=1|UniProt=E9Q4V8|association_with_transcript=-12bp_to_ENSMUST00000163405_5end|description=CAGE_peak_2_at_Ywhah_5end|id=chr5:33361483..33361514,+|ontology_enrichment_celltype=CL:0000117!2.14e-07!23;CL:0000337!2.14e-07!23;CL:0002319!7.78e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.14e-07,23;CL:0000337,2.14e-07,23;CL:0002319,7.78e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.46e-18!75;UBERON:0001016!4.46e-18!75;UBERON:0001017!2.60e-17!73;UBERON:0005743!2.60e-17!73;UBERON:0001049!3.33e-15!52;UBERON:0005068!3.33e-15!52;UBERON:0006241!3.33e-15!52;UBERON:0007135!3.33e-15!52;UBERON:0000955!4.13e-14!50;UBERON:0006238!4.13e-14!50;UBERON:0002616!1.29e-13!49;UBERON:0002020!3.55e-13!34;UBERON:0002346!2.11e-11!71;UBERON:0003075!2.11e-11!71;UBERON:0007284!2.11e-11!71;UBERON:0002791!2.05e-10!29;UBERON:0003528!2.05e-10!29;UBERON:0001893!2.05e-10!29;UBERON:0004121!3.96e-10!102;UBERON:0000924!3.96e-10!102;UBERON:0006601!3.96e-10!102;UBERON:0003080!6.23e-10!40;UBERON:0002780!1.84e-09!39;UBERON:0001890!1.84e-09!39;UBERON:0006240!1.84e-09!39;UBERON:0000033!3.65e-09!63;UBERON:0002021!4.27e-08!10;UBERON:0000411!4.27e-08!10;UBERON:0001950!4.27e-08!10;UBERON:0003056!1.14e-07!49;UBERON:0002619!1.23e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.46e-18,75;UBERON:0001017,2.60e-17,73;UBERON:0000073,2.06e-16,54;UBERON:0001049,3.33e-15,52;UBERON:0005068,3.33e-15,52;UBERON:0006241,3.33e-15,52;UBERON:0007135,3.33e-15,52;UBERON:0002020,3.55e-13,34;UBERON:0000955,1.95e-12,47;UBERON:0006238,1.95e-12,47;UBERON:0002346,2.80e-12,64;UBERON:0003075,2.80e-12,64;UBERON:0007284,2.80e-12,64;UBERON:0002616,5.87e-12,46;UBERON:0004121,1.42e-10,95;UBERON:0000924,1.42e-10,95;UBERON:0006601,1.42e-10,95;UBERON:0003528,2.05e-10,29;UBERON:0002791,2.05e-10,29;UBERON:0001893,2.05e-10,29;UBERON:0003080,6.23e-10,40;UBERON:0002780,1.84e-09,39;UBERON:0001890,1.84e-09,39;UBERON:0006240,1.84e-09,39;UBERON:0002021,4.27e-08,10;UBERON:0000411,4.27e-08,10;UBERON:0001950,4.27e-08,10;UBERON:0003056,1.14e-07,49;UBERON:0002619,1.23e-07,17;UBERON:0010371,1.28e-07,73;UBERON:0010314,4.92e-07,92|phase1_expression=17.2960754873177,49.9034832924286,60.9698980781978,40.5302043151152,52.0931559144201,37.1013190925276,47.1897534002962,3.74457637980571,9.15126693985834,8.89445200023575,3.76679530096111,3.5099749957948,3.25281386869291,3.75907730401689,40.9725007033265,41.7099050823041,56.6645121283799,6.30924330716475,6.99283611389268,4.66828616977833,40.9908658528156,8.34043990087437,10.1867917764185,38.8781587387978,34.8702107222098,45.3643251650866,39.6301036466349,37.7074657200306,51.1162998337646,33.0159469985509,45.6764851949928,16.5107975099504,11.0711661765223,31.6963362030877,17.0422455653252,15.2935873729813,16.3335485009895,61.1056180875885,50.786797394047,53.3994218853274,50.5879079706672,62.840184616177,57.2902216576761,17.7514513345564,13.0776241273174,18.7217687204915,51.6378287269706,23.3286917327078,38.664768161267,29.1644848611425,35.9765103577182,37.3756667348926,5.5368259999053,4.35217285206807,4.36921938885203,23.9251275513431,24.3553423947943,27.8462929829819,60.2903053361601,66.6528633882761,78.5950940347662,44.0497891689872,40.0182658250013,35.5460388326153,38.565788140112,34.8135256323589,32.0572118254693,26.1268447618657,21.1526809109294,24.1660629613726,21.6634710191923,177.103610330358,161.675771976581,26.9479758272899,21.7569219211397,34.0110951045708,133.24021600926,161.013733325422,164.819810183949,80.978180666339,66.6944921861566,69.8023916546058,125.073983552619,140.69065250792,141.491177441326,127.868806095572,116.602406574465,79.5925633674033,37.9388228599252,70.9616949402716,14.2033599463822,9.46466264679525,19.039197343817,3.77792234146472,12.3457519315057,8.96053774194671,19.3813299781818,22.6672329028817,19.743736349818,24.3804306412135,11.2674735821344,19.2489716121477,30.5766287647975,49.7746692207332,27.4943622084242,26.6027858748854,26.2872711407687,21.6949371466214,17.8667139716548,20.1881309128162,32.2682707785013,34.404599049272,32.5167851131042,27.2807979400247,25.1639833270408,18.7243221081216,64.2706916109372,13.013942122792,59.2689069806416,29.2797998404811,25.838457659866,30.0622656943838,39.1422698558057,113.59894924048,125.039683967633,29.8884754594052,11.8616973260861,12.5979573508616,11.690460890722,108.298632289687,113.002648896201,60.9423607747392,213.8039138365,278.2184175754,166.230435647648,165.486088329113,32.8941145236522,23.6373244159177,22.9977710174644,11.1534183619831,23.4216797332867,23.2201125477808,27.7295679900238,29.9902587493073,23.4725922072081,25.3665166164003,26.7986932240824,28.9747775227698,26.0837271448739,17.3977593754394,14.7798944297717,24.1115305670332,24.7462051810782,22.984642990463,27.9863705514803,24.2821805518562,6.31991868581911,10.2939162845886,17.9023004619223,34.3828782408933,30.7229138575236,27.9096195264573,33.1442629819294,26.1696428224047,26.99674475529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| ||
|EntrezGene=22629 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=E9Q4V8 | |||
|association_with_transcript=-12bp_to_ENSMUST00000163405_5end | |||
|description=CAGE_peak_2_at_Ywhah_5end | |||
|id=chr5:33361483..33361514,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.14e-07!23;CL:0000337!2.14e-07!23;CL:0002319!7.78e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.14e-07,23;CL:0000337,2.14e-07,23;CL:0002319,7.78e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.46e-18!75;UBERON:0001016!4.46e-18!75;UBERON:0001017!2.60e-17!73;UBERON:0005743!2.60e-17!73;UBERON:0001049!3.33e-15!52;UBERON:0005068!3.33e-15!52;UBERON:0006241!3.33e-15!52;UBERON:0007135!3.33e-15!52;UBERON:0000955!4.13e-14!50;UBERON:0006238!4.13e-14!50;UBERON:0002616!1.29e-13!49;UBERON:0002020!3.55e-13!34;UBERON:0002346!2.11e-11!71;UBERON:0003075!2.11e-11!71;UBERON:0007284!2.11e-11!71;UBERON:0002791!2.05e-10!29;UBERON:0003528!2.05e-10!29;UBERON:0001893!2.05e-10!29;UBERON:0004121!3.96e-10!102;UBERON:0000924!3.96e-10!102;UBERON:0006601!3.96e-10!102;UBERON:0003080!6.23e-10!40;UBERON:0002780!1.84e-09!39;UBERON:0001890!1.84e-09!39;UBERON:0006240!1.84e-09!39;UBERON:0000033!3.65e-09!63;UBERON:0002021!4.27e-08!10;UBERON:0000411!4.27e-08!10;UBERON:0001950!4.27e-08!10;UBERON:0003056!1.14e-07!49;UBERON:0002619!1.23e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.46e-18,75;UBERON:0001017,2.60e-17,73;UBERON:0000073,2.06e-16,54;UBERON:0001049,3.33e-15,52;UBERON:0005068,3.33e-15,52;UBERON:0006241,3.33e-15,52;UBERON:0007135,3.33e-15,52;UBERON:0002020,3.55e-13,34;UBERON:0000955,1.95e-12,47;UBERON:0006238,1.95e-12,47;UBERON:0002346,2.80e-12,64;UBERON:0003075,2.80e-12,64;UBERON:0007284,2.80e-12,64;UBERON:0002616,5.87e-12,46;UBERON:0004121,1.42e-10,95;UBERON:0000924,1.42e-10,95;UBERON:0006601,1.42e-10,95;UBERON:0003528,2.05e-10,29;UBERON:0002791,2.05e-10,29;UBERON:0001893,2.05e-10,29;UBERON:0003080,6.23e-10,40;UBERON:0002780,1.84e-09,39;UBERON:0001890,1.84e-09,39;UBERON:0006240,1.84e-09,39;UBERON:0002021,4.27e-08,10;UBERON:0000411,4.27e-08,10;UBERON:0001950,4.27e-08,10;UBERON:0003056,1.14e-07,49;UBERON:0002619,1.23e-07,17;UBERON:0010371,1.28e-07,73;UBERON:0010314,4.92e-07,92 | |||
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| |||
|short_description=p2@Ywhah | |||
}} |
Revision as of 07:28, 14 September 2013
Short description: | p2@Ywhah |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ywhah_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -12bp_to_ENSMUST00000163405_5end |
EntrezGene: | Ywhah |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.14e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.14e-07 | 23 |
neural cell | 7.78e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.46e-18 | 75 |
central nervous system | 2.60e-17 | 73 |
regional part of nervous system | 2.06e-16 | 54 |
neural tube | 3.33e-15 | 52 |
neural rod | 3.33e-15 | 52 |
future spinal cord | 3.33e-15 | 52 |
neural keel | 3.33e-15 | 52 |
gray matter | 3.55e-13 | 34 |
brain | 1.95e-12 | 47 |
future brain | 1.95e-12 | 47 |
neurectoderm | 2.80e-12 | 64 |
neural plate | 2.80e-12 | 64 |
presumptive neural plate | 2.80e-12 | 64 |
regional part of brain | 5.87e-12 | 46 |
ectoderm-derived structure | 1.42e-10 | 95 |
ectoderm | 1.42e-10 | 95 |
presumptive ectoderm | 1.42e-10 | 95 |
brain grey matter | 2.05e-10 | 29 |
regional part of telencephalon | 2.05e-10 | 29 |
telencephalon | 2.05e-10 | 29 |
anterior neural tube | 6.23e-10 | 40 |
regional part of forebrain | 1.84e-09 | 39 |
forebrain | 1.84e-09 | 39 |
future forebrain | 1.84e-09 | 39 |
occipital lobe | 4.27e-08 | 10 |
visual cortex | 4.27e-08 | 10 |
neocortex | 4.27e-08 | 10 |
pre-chordal neural plate | 1.14e-07 | 49 |
regional part of cerebral cortex | 1.23e-07 | 17 |
ecto-epithelium | 1.28e-07 | 73 |
structure with developmental contribution from neural crest | 4.92e-07 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.