FFCP PHASE1:Hg19::chr9:5510574..5510587,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80380|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18731|TSSclassifier=S|UniProt=Q9BQ51|association_with_transcript=4bp_to_ENST00000397747_5end|coexpression_cluster_id=C2021|description=CAGE_peak_3_at_PDCD1LG2_5end|id=chr9:5510574..5510587,+|ontology_enrichment_celltype=CL:0000359!2.27e-13!32;CL:0002371!9.22e-13!591;CL:0000144!6.41e-12!625;CL:0000723!1.47e-11!436;CL:0000192!1.48e-11!42;CL:0000514!1.48e-11!42;CL:0000048!4.66e-11!430;CL:0000055!1.27e-10!180;CL:0000034!2.65e-10!444;CL:0000548!3.53e-09!679;CL:0000004!3.53e-09!679;CL:0000255!3.53e-09!679;CL:0000680!3.91e-09!57;CL:0000056!3.91e-09!57;CL:0000355!3.91e-09!57;CL:0000187!9.11e-09!54;CL:0000012!9.37e-09!682;CL:0000222!1.02e-08!119;CL:0002194!1.70e-08!63;CL:0000576!1.70e-08!63;CL:0000040!1.70e-08!63;CL:0000559!1.70e-08!63;CL:0002009!1.70e-08!65;CL:0000057!3.26e-08!75;CL:0002620!3.68e-08!23;CL:0000557!1.92e-07!71;CL:0000183!2.03e-07!59;CL:0000839!4.03e-07!70|ontology_enrichment_celltype_v019=CL:0000359;6.33e-17;32!CL:0000473;2.55e-13;39!CL:0000234;2.55e-13;39!CL:0000860;3.62e-12;33!CL:0002057;3.62e-12;33!CL:0000192;8.13e-09;43!CL:0002595;1.54e-08;5!CL:0002539;4.03e-08;10|ontology_enrichment_celltype_v019_2=CL:0000359,4.92e-18,32;CL:0002009,1.94e-14,61;CL:0002194,4.28e-14,59;CL:0000576,4.28e-14,59;CL:0000040,4.28e-14,59;CL:0000559,4.28e-14,59;CL:0000557,2.05e-12,67;CL:0000473,5.26e-12,48;CL:0000234,5.26e-12,48;CL:0000192,8.59e-12,43;CL:0000514,8.59e-12,43;CL:0000839,9.10e-12,66;CL:0000048,5.10e-11,427;CL:0000723,5.27e-11,433;CL:0000034,2.28e-10,441;CL:0000766,3.75e-10,72;CL:0000860,1.07e-09,42;CL:0002057,1.07e-09,42;CL:0000680,6.79e-09,58;CL:0000056,6.79e-09,58;CL:0000355,6.79e-09,58;CL:0002595,1.43e-08,5;CL:0002539,3.10e-08,10;CL:0000187,5.97e-08,55|ontology_enrichment_development_v019=CL:0000514;8.13e-09;43!CL:0002057;6.79e-07;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;7.21e-08;5!DOID:450;7.21e-08;5!DOID:66;7.21e-08;5!DOID:423;7.21e-08;5!DOID:0080000;7.21e-08;5!DOID:11722;7.21e-08;5|ontology_enrichment_disease_v019_2=DOID:17,4.62e-08,5;DOID:450,4.62e-08,5;DOID:66,4.62e-08,5;DOID:423,4.62e-08,5;DOID:0080000,4.62e-08,5;DOID:11722,4.62e-08,5|ontology_enrichment_uberon=UBERON:0004872!1.77e-13!84;UBERON:0003081!8.08e-13!216;UBERON:0002204!3.22e-12!167;UBERON:0001637!5.23e-12!42;UBERON:0003509!5.23e-12!42;UBERON:0004572!5.23e-12!42;UBERON:0001981!5.29e-12!60;UBERON:0007500!5.29e-12!60;UBERON:0004537!5.29e-12!60;UBERON:0006965!5.29e-12!60;UBERON:0000055!5.88e-12!69;UBERON:0004573!1.00e-10!33;UBERON:0004571!1.00e-10!33;UBERON:0000914!1.68e-10!83;UBERON:0002329!1.68e-10!83;UBERON:0003077!1.68e-10!83;UBERON:0003059!1.68e-10!83;UBERON:0007282!1.68e-10!83;UBERON:0009618!1.68e-10!83;UBERON:0007285!1.68e-10!83;UBERON:0002049!5.97e-10!79;UBERON:0007798!5.97e-10!79;UBERON:0000486!1.01e-09!82;UBERON:0004290!4.03e-09!70;UBERON:0004535!1.07e-07!110;UBERON:0001134!1.24e-07!61;UBERON:0002036!1.24e-07!61;UBERON:0003082!1.24e-07!61;UBERON:0002371!4.64e-07!80;UBERON:0001009!5.30e-07!113;UBERON:0002385!5.61e-07!63;UBERON:0001015!5.61e-07!63;UBERON:0000383!5.61e-07!63;UBERON:0002405!9.27e-07!115|ontology_enrichment_uberon_v019=UBERON:0004573;3.04e-11;33!UBERON:0004571;3.04e-11;33!UBERON:0001637;7.89e-09;42!UBERON:0003509;7.89e-09;42!UBERON:0004572;7.89e-09;42!UBERON:0003834;1.54e-08;5!UBERON:0001533;1.54e-08;5!UBERON:0004237;4.03e-08;10!UBERON:0004695;4.03e-08;10!UBERON:0002111;4.03e-08;10!UBERON:0004178;4.03e-08;10|ontology_enrichment_uberon_v019_2=UBERON:0002204,6.07e-16,167;UBERON:0003081,1.05e-13,203;UBERON:0004573,3.07e-12,33;UBERON:0004571,3.07e-12,33;UBERON:0001637,3.08e-12,42;UBERON:0003509,3.08e-12,42;UBERON:0004572,3.08e-12,42;UBERON:0002405,6.48e-12,93;UBERON:0002371,8.75e-12,76;UBERON:0004765,2.25e-11,90;UBERON:0001474,2.60e-10,82;UBERON:0000926,1.86e-09,315;UBERON:0004120,1.86e-09,315;UBERON:0006603,1.86e-09,315;UBERON:0000486,2.09e-09,83;UBERON:0001434,2.45e-09,100;UBERON:0002193,5.78e-09,108;UBERON:0002390,9.86e-09,98;UBERON:0003061,9.86e-09,98;UBERON:0003834,1.43e-08,5;UBERON:0001533,1.43e-08,5;UBERON:0000055,3.08e-08,68;UBERON:0004237,3.10e-08,10;UBERON:0004695,3.10e-08,10;UBERON:0002111,3.10e-08,10;UBERON:0004178,3.10e-08,10;UBERON:0007500,5.75e-08,59;UBERON:0001981,5.75e-08,59;UBERON:0004537,5.75e-08,59;UBERON:0006965,5.75e-08,59;UBERON:0004872,6.25e-08,83;UBERON:0001134,6.26e-08,62;UBERON:0002036,6.26e-08,62;UBERON:0003082,6.26e-08,62;UBERON:0002329,1.08e-07,71;UBERON:0003059,1.08e-07,71;UBERON:0007282,1.08e-07,71;UBERON:0004290,1.08e-07,71;UBERON:0009618,1.08e-07,71;UBERON:0002385,1.69e-07,64;UBERON:0001015,1.69e-07,64;UBERON:0000383,1.69e-07,64;UBERON:0003077,1.70e-07,72;UBERON:0007285,1.70e-07,72;UBERON:0007524,2.62e-07,73;UBERON:0002049,4.91e-07,78;UBERON:0007798,4.91e-07,78|phase1_expression=0.363356758541113,1.07050261945492,0.281908808191942,0,0,0.872338524100369,0,0,0,0,0,0,0.791300934685361,0,0,4.03395087871065,1.80808358407193,5.11217063271161,4.3913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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=80380 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18731 | |||
|TSSclassifier=S | |||
|UniProt=Q9BQ51 | |||
|association_with_transcript=4bp_to_ENST00000397747_5end | |||
|coexpression_cluster_id=C2021 | |||
|description=CAGE_peak_3_at_PDCD1LG2_5end | |||
|id=chr9:5510574..5510587,+ | |||
|ontology_enrichment_celltype=CL:0000359!2.27e-13!32;CL:0002371!9.22e-13!591;CL:0000144!6.41e-12!625;CL:0000723!1.47e-11!436;CL:0000192!1.48e-11!42;CL:0000514!1.48e-11!42;CL:0000048!4.66e-11!430;CL:0000055!1.27e-10!180;CL:0000034!2.65e-10!444;CL:0000548!3.53e-09!679;CL:0000004!3.53e-09!679;CL:0000255!3.53e-09!679;CL:0000680!3.91e-09!57;CL:0000056!3.91e-09!57;CL:0000355!3.91e-09!57;CL:0000187!9.11e-09!54;CL:0000012!9.37e-09!682;CL:0000222!1.02e-08!119;CL:0002194!1.70e-08!63;CL:0000576!1.70e-08!63;CL:0000040!1.70e-08!63;CL:0000559!1.70e-08!63;CL:0002009!1.70e-08!65;CL:0000057!3.26e-08!75;CL:0002620!3.68e-08!23;CL:0000557!1.92e-07!71;CL:0000183!2.03e-07!59;CL:0000839!4.03e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.33e-17;32!CL:0000473;2.55e-13;39!CL:0000234;2.55e-13;39!CL:0000860;3.62e-12;33!CL:0002057;3.62e-12;33!CL:0000192;8.13e-09;43!CL:0002595;1.54e-08;5!CL:0002539;4.03e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,4.92e-18,32;CL:0002009,1.94e-14,61;CL:0002194,4.28e-14,59;CL:0000576,4.28e-14,59;CL:0000040,4.28e-14,59;CL:0000559,4.28e-14,59;CL:0000557,2.05e-12,67;CL:0000473,5.26e-12,48;CL:0000234,5.26e-12,48;CL:0000192,8.59e-12,43;CL:0000514,8.59e-12,43;CL:0000839,9.10e-12,66;CL:0000048,5.10e-11,427;CL:0000723,5.27e-11,433;CL:0000034,2.28e-10,441;CL:0000766,3.75e-10,72;CL:0000860,1.07e-09,42;CL:0002057,1.07e-09,42;CL:0000680,6.79e-09,58;CL:0000056,6.79e-09,58;CL:0000355,6.79e-09,58;CL:0002595,1.43e-08,5;CL:0002539,3.10e-08,10;CL:0000187,5.97e-08,55 | |||
|ontology_enrichment_development_v019=CL:0000514;8.13e-09;43!CL:0002057;6.79e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;7.21e-08;5!DOID:450;7.21e-08;5!DOID:66;7.21e-08;5!DOID:423;7.21e-08;5!DOID:0080000;7.21e-08;5!DOID:11722;7.21e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.62e-08,5;DOID:450,4.62e-08,5;DOID:66,4.62e-08,5;DOID:423,4.62e-08,5;DOID:0080000,4.62e-08,5;DOID:11722,4.62e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0004872!1.77e-13!84;UBERON:0003081!8.08e-13!216;UBERON:0002204!3.22e-12!167;UBERON:0001637!5.23e-12!42;UBERON:0003509!5.23e-12!42;UBERON:0004572!5.23e-12!42;UBERON:0001981!5.29e-12!60;UBERON:0007500!5.29e-12!60;UBERON:0004537!5.29e-12!60;UBERON:0006965!5.29e-12!60;UBERON:0000055!5.88e-12!69;UBERON:0004573!1.00e-10!33;UBERON:0004571!1.00e-10!33;UBERON:0000914!1.68e-10!83;UBERON:0002329!1.68e-10!83;UBERON:0003077!1.68e-10!83;UBERON:0003059!1.68e-10!83;UBERON:0007282!1.68e-10!83;UBERON:0009618!1.68e-10!83;UBERON:0007285!1.68e-10!83;UBERON:0002049!5.97e-10!79;UBERON:0007798!5.97e-10!79;UBERON:0000486!1.01e-09!82;UBERON:0004290!4.03e-09!70;UBERON:0004535!1.07e-07!110;UBERON:0001134!1.24e-07!61;UBERON:0002036!1.24e-07!61;UBERON:0003082!1.24e-07!61;UBERON:0002371!4.64e-07!80;UBERON:0001009!5.30e-07!113;UBERON:0002385!5.61e-07!63;UBERON:0001015!5.61e-07!63;UBERON:0000383!5.61e-07!63;UBERON:0002405!9.27e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.04e-11;33!UBERON:0004571;3.04e-11;33!UBERON:0001637;7.89e-09;42!UBERON:0003509;7.89e-09;42!UBERON:0004572;7.89e-09;42!UBERON:0003834;1.54e-08;5!UBERON:0001533;1.54e-08;5!UBERON:0004237;4.03e-08;10!UBERON:0004695;4.03e-08;10!UBERON:0002111;4.03e-08;10!UBERON:0004178;4.03e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,6.07e-16,167;UBERON:0003081,1.05e-13,203;UBERON:0004573,3.07e-12,33;UBERON:0004571,3.07e-12,33;UBERON:0001637,3.08e-12,42;UBERON:0003509,3.08e-12,42;UBERON:0004572,3.08e-12,42;UBERON:0002405,6.48e-12,93;UBERON:0002371,8.75e-12,76;UBERON:0004765,2.25e-11,90;UBERON:0001474,2.60e-10,82;UBERON:0000926,1.86e-09,315;UBERON:0004120,1.86e-09,315;UBERON:0006603,1.86e-09,315;UBERON:0000486,2.09e-09,83;UBERON:0001434,2.45e-09,100;UBERON:0002193,5.78e-09,108;UBERON:0002390,9.86e-09,98;UBERON:0003061,9.86e-09,98;UBERON:0003834,1.43e-08,5;UBERON:0001533,1.43e-08,5;UBERON:0000055,3.08e-08,68;UBERON:0004237,3.10e-08,10;UBERON:0004695,3.10e-08,10;UBERON:0002111,3.10e-08,10;UBERON:0004178,3.10e-08,10;UBERON:0007500,5.75e-08,59;UBERON:0001981,5.75e-08,59;UBERON:0004537,5.75e-08,59;UBERON:0006965,5.75e-08,59;UBERON:0004872,6.25e-08,83;UBERON:0001134,6.26e-08,62;UBERON:0002036,6.26e-08,62;UBERON:0003082,6.26e-08,62;UBERON:0002329,1.08e-07,71;UBERON:0003059,1.08e-07,71;UBERON:0007282,1.08e-07,71;UBERON:0004290,1.08e-07,71;UBERON:0009618,1.08e-07,71;UBERON:0002385,1.69e-07,64;UBERON:0001015,1.69e-07,64;UBERON:0000383,1.69e-07,64;UBERON:0003077,1.70e-07,72;UBERON:0007285,1.70e-07,72;UBERON:0007524,2.62e-07,73;UBERON:0002049,4.91e-07,78;UBERON:0007798,4.91e-07,78 | |||
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| |||
|short_description=p3@PDCD1LG2 | |||
}} |
Revision as of 09:08, 14 September 2013
Short description: | p3@PDCD1LG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PDCD1LG2_5end |
Coexpression cluster: | C2021_basal_mesenchymal_Dendritic_Smooth_Fibroblast_Aortic_Mallassezderived |
Association with transcript: | 4bp_to_ENST00000397747_5end |
EntrezGene: | PDCD1LG2 |
HGNC: | 18731 |
UniProt: | Q9BQ51 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 4.92e-18 | 32 |
macrophage dendritic cell progenitor | 1.94e-14 | 61 |
monopoietic cell | 4.28e-14 | 59 |
monocyte | 4.28e-14 | 59 |
monoblast | 4.28e-14 | 59 |
promonocyte | 4.28e-14 | 59 |
granulocyte monocyte progenitor cell | 2.05e-12 | 67 |
defensive cell | 5.26e-12 | 48 |
phagocyte | 5.26e-12 | 48 |
smooth muscle cell | 8.59e-12 | 43 |
smooth muscle myoblast | 8.59e-12 | 43 |
myeloid lineage restricted progenitor cell | 9.10e-12 | 66 |
multi fate stem cell | 5.10e-11 | 427 |
somatic stem cell | 5.27e-11 | 433 |
stem cell | 2.28e-10 | 441 |
myeloid leukocyte | 3.75e-10 | 72 |
classical monocyte | 1.07e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.07e-09 | 42 |
muscle precursor cell | 6.79e-09 | 58 |
myoblast | 6.79e-09 | 58 |
multi-potent skeletal muscle stem cell | 6.79e-09 | 58 |
smooth muscle cell of the subclavian artery | 1.43e-08 | 5 |
aortic smooth muscle cell | 3.10e-08 | 10 |
muscle cell | 5.97e-08 | 55 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.62e-08 | 5 |
myotonic disease | 4.62e-08 | 5 |
muscle tissue disease | 4.62e-08 | 5 |
myopathy | 4.62e-08 | 5 |
muscular disease | 4.62e-08 | 5 |
myotonic dystrophy | 4.62e-08 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.