FFCP PHASE1:Mm9::chr7:16502686..16502782,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=168|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:16502686..16502782,-|id=chr7:16502686..16502782,-|ontology_enrichment_celltype=CL:0002319!2.35e-13!43;CL:0000055!4.20e-13!50;CL:0000221!9.40e-13!44;CL:0000133!9.40e-13!44;CL:0000540!6.70e-12!33;CL:0000047!6.70e-12!33;CL:0000031!6.70e-12!33;CL:0000404!6.70e-12!33;CL:0000393!1.98e-11!39;CL:0000211!1.98e-11!39;CL:0000117!1.42e-10!23;CL:0000337!1.42e-10!23|ontology_enrichment_celltype_v019_2=CL:0002319,1.52e-14,43;CL:0000221,9.46e-14,44;CL:0000133,9.46e-14,44;CL:0000540,3.95e-13,33;CL:0000047,3.95e-13,33;CL:0000031,3.95e-13,33;CL:0000404,3.95e-13,33;CL:0000393,2.07e-12,39;CL:0000211,2.07e-12,39;CL:0000117,2.44e-11,23;CL:0000337,2.44e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.32e-24!73;UBERON:0005743!3.32e-24!73;UBERON:0000073!8.47e-23!75;UBERON:0001016!8.47e-23!75;UBERON:0004121!3.57e-18!102;UBERON:0000924!3.57e-18!102;UBERON:0006601!3.57e-18!102;UBERON:0001049!2.68e-17!52;UBERON:0005068!2.68e-17!52;UBERON:0006241!2.68e-17!52;UBERON:0007135!2.68e-17!52;UBERON:0002346!5.44e-17!71;UBERON:0003075!5.44e-17!71;UBERON:0007284!5.44e-17!71;UBERON:0002020!7.88e-17!34;UBERON:0000955!5.63e-16!50;UBERON:0006238!5.63e-16!50;UBERON:0002616!1.46e-15!49;UBERON:0000033!8.19e-15!63;UBERON:0002791!5.00e-14!29;UBERON:0003528!5.00e-14!29;UBERON:0001893!5.00e-14!29;UBERON:0003056!2.10e-12!49;UBERON:0003080!3.25e-12!40;UBERON:0002780!4.51e-12!39;UBERON:0001890!4.51e-12!39;UBERON:0006240!4.51e-12!39;UBERON:0000956!1.28e-10!21;UBERON:0001869!1.28e-10!21;UBERON:0000203!1.28e-10!21;UBERON:0000153!1.61e-09!94;UBERON:0002619!3.06e-09!17;UBERON:0007811!5.60e-09!86;UBERON:0002021!1.04e-07!10;UBERON:0000411!1.04e-07!10;UBERON:0001950!1.04e-07!10;UBERON:0000025!1.26e-07!114;UBERON:0000468!7.09e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.31e-26,73;UBERON:0001016,2.51e-24,75;UBERON:0004121,2.36e-20,95;UBERON:0000924,2.36e-20,95;UBERON:0006601,2.36e-20,95;UBERON:0002346,2.28e-19,64;UBERON:0003075,2.28e-19,64;UBERON:0007284,2.28e-19,64;UBERON:0000073,2.61e-19,54;UBERON:0001049,3.68e-18,52;UBERON:0005068,3.68e-18,52;UBERON:0006241,3.68e-18,52;UBERON:0007135,3.68e-18,52;UBERON:0002020,3.95e-18,34;UBERON:0000955,2.95e-15,47;UBERON:0006238,2.95e-15,47;UBERON:0003528,4.35e-15,29;UBERON:0002791,4.35e-15,29;UBERON:0001893,4.35e-15,29;UBERON:0002616,8.08e-15,46;UBERON:0010371,8.21e-15,73;UBERON:0010314,1.36e-14,92;UBERON:0003056,8.31e-13,49;UBERON:0003080,1.11e-12,40;UBERON:0002780,1.59e-12,39;UBERON:0001890,1.59e-12,39;UBERON:0006240,1.59e-12,39;UBERON:0000956,2.18e-11,21;UBERON:0001869,2.18e-11,21;UBERON:0000203,2.18e-11,21;UBERON:0002619,6.79e-10,17;UBERON:0002021,3.11e-08,10;UBERON:0000411,3.11e-08,10;UBERON:0001950,3.11e-08,10;UBERON:0000025,2.77e-07,114|phase1_expression=0,0,0,0.90739263392049,0,0,0.233612640595526,0.129123323441576,0.563154888606667,0.468129052643987,0.34243593645101,0.398860794976682,0.513602189793617,0.699363219351979,0.333109761815663,0.404950534779652,0,0.630924330716475,0.959801035240171,0.84877930359606,1.78590909317247,0.893618560807968,1.04479915655574,0.639969691173627,0,0,0.430761996159075,0,0.950117097281869,0.504060259519861,0.443461021310609,0,1.23012957516914,0,0.288851619751275,0,0,0,0,0,0,0,0,0.755380907853464,1.01376931219515,1.83546752161682,5.47673941043627,3.92445281484804,1.75748946187577,1.94429899074283,2.37976916763116,2.87505128729943,0.167782606057736,0.725362142011344,0.672187598284928,3.60163210450326,1.71920063963254,1.54701627683233,1.41621522601718,7.40587370980846,4.43681982454325,1.0165335962074,1.77858959222228,1.7997994345628,2.96659908770092,1.4209602298922,5.69240209984969,7.30014780110954,3.31806759387129,3.64516033495565,1.89292465216244,4.57041575046086,5.74258206474195,4.5321595709533,1.91690942036473,3.67687514644008,2.20231761998777,9.95961237064464,4.14737639791857,3.29715719325485,4.11694396210843,2.08365348222704,4.4669279840221,7.87867654044352,5.19514042441154,7.66034322231536,7.54569908235246,3.16879057903011,0.227178579999552,0.906858721281426,0.869593466105033,1.72084775396277,0,0,0.649776417447669,1.34408066129201,2.10666630197628,0.852151612890289,1.55871602761721,0,0.704217098883403,0,2.54805239706646,0,0.216491041011214,0.253359865475099,0,0.68510327831436,0.517875767294343,1.92974780784272,1.21439728736295,0.913396434936424,1.61430848079241,1.20578112442098,1.17588707135705,0.376999773989026,0.741584903203122,1.01219549843938,0.884610551949874,2.42650274921114,4.19598885074748,5.81850303762267,1.86391761218122,4.39171195517321,21.7824575085993,2.04365644166873,0.239630249011841,0.599902730993408,0,1.9472783122627,4.11750542536764,2.38743269014442,5.56237824615285,3.3243009452943,2.0778804455956,2.43361894601636,1.01839363850316,1.61729061793121,0,1.26265113531884,2.21204753036596,0.689706313300419,1.26043490863744,2.41127708537144,1.76894897793452,2.17793324484245,2.248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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=168 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:16502686..16502782,- | |||
|id=chr7:16502686..16502782,- | |||
|ontology_enrichment_celltype=CL:0002319!2.35e-13!43;CL:0000055!4.20e-13!50;CL:0000221!9.40e-13!44;CL:0000133!9.40e-13!44;CL:0000540!6.70e-12!33;CL:0000047!6.70e-12!33;CL:0000031!6.70e-12!33;CL:0000404!6.70e-12!33;CL:0000393!1.98e-11!39;CL:0000211!1.98e-11!39;CL:0000117!1.42e-10!23;CL:0000337!1.42e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.52e-14,43;CL:0000221,9.46e-14,44;CL:0000133,9.46e-14,44;CL:0000540,3.95e-13,33;CL:0000047,3.95e-13,33;CL:0000031,3.95e-13,33;CL:0000404,3.95e-13,33;CL:0000393,2.07e-12,39;CL:0000211,2.07e-12,39;CL:0000117,2.44e-11,23;CL:0000337,2.44e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.32e-24!73;UBERON:0005743!3.32e-24!73;UBERON:0000073!8.47e-23!75;UBERON:0001016!8.47e-23!75;UBERON:0004121!3.57e-18!102;UBERON:0000924!3.57e-18!102;UBERON:0006601!3.57e-18!102;UBERON:0001049!2.68e-17!52;UBERON:0005068!2.68e-17!52;UBERON:0006241!2.68e-17!52;UBERON:0007135!2.68e-17!52;UBERON:0002346!5.44e-17!71;UBERON:0003075!5.44e-17!71;UBERON:0007284!5.44e-17!71;UBERON:0002020!7.88e-17!34;UBERON:0000955!5.63e-16!50;UBERON:0006238!5.63e-16!50;UBERON:0002616!1.46e-15!49;UBERON:0000033!8.19e-15!63;UBERON:0002791!5.00e-14!29;UBERON:0003528!5.00e-14!29;UBERON:0001893!5.00e-14!29;UBERON:0003056!2.10e-12!49;UBERON:0003080!3.25e-12!40;UBERON:0002780!4.51e-12!39;UBERON:0001890!4.51e-12!39;UBERON:0006240!4.51e-12!39;UBERON:0000956!1.28e-10!21;UBERON:0001869!1.28e-10!21;UBERON:0000203!1.28e-10!21;UBERON:0000153!1.61e-09!94;UBERON:0002619!3.06e-09!17;UBERON:0007811!5.60e-09!86;UBERON:0002021!1.04e-07!10;UBERON:0000411!1.04e-07!10;UBERON:0001950!1.04e-07!10;UBERON:0000025!1.26e-07!114;UBERON:0000468!7.09e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.31e-26,73;UBERON:0001016,2.51e-24,75;UBERON:0004121,2.36e-20,95;UBERON:0000924,2.36e-20,95;UBERON:0006601,2.36e-20,95;UBERON:0002346,2.28e-19,64;UBERON:0003075,2.28e-19,64;UBERON:0007284,2.28e-19,64;UBERON:0000073,2.61e-19,54;UBERON:0001049,3.68e-18,52;UBERON:0005068,3.68e-18,52;UBERON:0006241,3.68e-18,52;UBERON:0007135,3.68e-18,52;UBERON:0002020,3.95e-18,34;UBERON:0000955,2.95e-15,47;UBERON:0006238,2.95e-15,47;UBERON:0003528,4.35e-15,29;UBERON:0002791,4.35e-15,29;UBERON:0001893,4.35e-15,29;UBERON:0002616,8.08e-15,46;UBERON:0010371,8.21e-15,73;UBERON:0010314,1.36e-14,92;UBERON:0003056,8.31e-13,49;UBERON:0003080,1.11e-12,40;UBERON:0002780,1.59e-12,39;UBERON:0001890,1.59e-12,39;UBERON:0006240,1.59e-12,39;UBERON:0000956,2.18e-11,21;UBERON:0001869,2.18e-11,21;UBERON:0000203,2.18e-11,21;UBERON:0002619,6.79e-10,17;UBERON:0002021,3.11e-08,10;UBERON:0000411,3.11e-08,10;UBERON:0001950,3.11e-08,10;UBERON:0000025,2.77e-07,114 | |||
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| |||
|short_description=p@chr7:16502686..16502782,- | |||
}} |
Revision as of 12:32, 14 September 2013
Short description: | p@chr7:16502686..16502782, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:16502686..16502782, - |
Coexpression cluster: | MCL_coexpression_mm9:168 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.52e-14 | 43 |
ectodermal cell | 9.46e-14 | 44 |
neurectodermal cell | 9.46e-14 | 44 |
neuron | 3.95e-13 | 33 |
neuronal stem cell | 3.95e-13 | 33 |
neuroblast | 3.95e-13 | 33 |
electrically signaling cell | 3.95e-13 | 33 |
electrically responsive cell | 2.07e-12 | 39 |
electrically active cell | 2.07e-12 | 39 |
CNS neuron (sensu Vertebrata) | 2.44e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.44e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.31e-26 | 73 |
nervous system | 2.51e-24 | 75 |
ectoderm-derived structure | 2.36e-20 | 95 |
ectoderm | 2.36e-20 | 95 |
presumptive ectoderm | 2.36e-20 | 95 |
neurectoderm | 2.28e-19 | 64 |
neural plate | 2.28e-19 | 64 |
presumptive neural plate | 2.28e-19 | 64 |
regional part of nervous system | 2.61e-19 | 54 |
neural tube | 3.68e-18 | 52 |
neural rod | 3.68e-18 | 52 |
future spinal cord | 3.68e-18 | 52 |
neural keel | 3.68e-18 | 52 |
gray matter | 3.95e-18 | 34 |
brain | 2.95e-15 | 47 |
future brain | 2.95e-15 | 47 |
brain grey matter | 4.35e-15 | 29 |
regional part of telencephalon | 4.35e-15 | 29 |
telencephalon | 4.35e-15 | 29 |
regional part of brain | 8.08e-15 | 46 |
ecto-epithelium | 8.21e-15 | 73 |
structure with developmental contribution from neural crest | 1.36e-14 | 92 |
pre-chordal neural plate | 8.31e-13 | 49 |
anterior neural tube | 1.11e-12 | 40 |
regional part of forebrain | 1.59e-12 | 39 |
forebrain | 1.59e-12 | 39 |
future forebrain | 1.59e-12 | 39 |
cerebral cortex | 2.18e-11 | 21 |
cerebral hemisphere | 2.18e-11 | 21 |
pallium | 2.18e-11 | 21 |
regional part of cerebral cortex | 6.79e-10 | 17 |
occipital lobe | 3.11e-08 | 10 |
visual cortex | 3.11e-08 | 10 |
neocortex | 3.11e-08 | 10 |
tube | 2.77e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.