FFCP PHASE1:Mm9::chr7:5003117..5003159,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68992|HGNC=|MCL_coexpression_id=398|UniProt=Q9DB38|association_with_transcript=0bp_to_ENSMUST00000069324,NM_026900,uc009ezp.2_5end|description=CAGE_peak_1_at_Zfp580_5end|id=chr7:5003117..5003159,+|ontology_enrichment_celltype=CL:0000221!3.21e-15!44;CL:0000133!3.21e-15!44;CL:0002319!8.15e-15!43;CL:0000055!5.45e-14!50;CL:0000540!9.31e-12!33;CL:0000047!9.31e-12!33;CL:0000031!9.31e-12!33;CL:0000404!9.31e-12!33;CL:0000393!1.35e-11!39;CL:0000211!1.35e-11!39;CL:0000117!2.24e-09!23;CL:0000337!2.24e-09!23|ontology_enrichment_celltype_v019_2=CL:0000221,2.97e-15,44;CL:0000133,2.97e-15,44;CL:0002319,7.55e-15,43;CL:0000540,8.78e-12,33;CL:0000047,8.78e-12,33;CL:0000031,8.78e-12,33;CL:0000404,8.78e-12,33;CL:0000393,1.28e-11,39;CL:0000211,1.28e-11,39;CL:0000117,2.14e-09,23;CL:0000337,2.14e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.88e-27!73;UBERON:0005743!8.88e-27!73;UBERON:0000073!7.36e-26!75;UBERON:0001016!7.36e-26!75;UBERON:0004121!4.20e-22!102;UBERON:0000924!4.20e-22!102;UBERON:0006601!4.20e-22!102;UBERON:0001049!6.73e-19!52;UBERON:0005068!6.73e-19!52;UBERON:0006241!6.73e-19!52;UBERON:0007135!6.73e-19!52;UBERON:0002346!3.40e-18!71;UBERON:0003075!3.40e-18!71;UBERON:0007284!3.40e-18!71;UBERON:0000033!5.44e-16!63;UBERON:0000955!9.55e-16!50;UBERON:0006238!9.55e-16!50;UBERON:0002616!3.38e-15!49;UBERON:0002020!5.67e-15!34;UBERON:0003056!1.13e-14!49;UBERON:0002780!1.76e-14!39;UBERON:0001890!1.76e-14!39;UBERON:0006240!1.76e-14!39;UBERON:0003080!3.72e-14!40;UBERON:0002791!7.82e-12!29;UBERON:0003528!7.82e-12!29;UBERON:0001893!7.82e-12!29;UBERON:0000956!3.65e-10!21;UBERON:0001869!3.65e-10!21;UBERON:0000203!3.65e-10!21;UBERON:0000153!3.25e-09!94;UBERON:0007811!4.38e-09!86;UBERON:0002619!2.31e-08!17;UBERON:0000025!9.23e-08!114;UBERON:0004111!3.92e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.68e-27,73;UBERON:0001016,6.40e-26,75;UBERON:0004121,9.27e-24,95;UBERON:0000924,9.27e-24,95;UBERON:0006601,9.27e-24,95;UBERON:0002346,2.63e-20,64;UBERON:0003075,2.63e-20,64;UBERON:0007284,2.63e-20,64;UBERON:0010371,1.20e-19,73;UBERON:0001049,6.09e-19,52;UBERON:0005068,6.09e-19,52;UBERON:0006241,6.09e-19,52;UBERON:0007135,6.09e-19,52;UBERON:0000073,2.11e-18,54;UBERON:0010314,1.68e-16,92;UBERON:0000955,4.22e-16,47;UBERON:0006238,4.22e-16,47;UBERON:0002616,1.52e-15,46;UBERON:0002020,5.25e-15,34;UBERON:0003056,1.04e-14,49;UBERON:0002780,1.63e-14,39;UBERON:0001890,1.63e-14,39;UBERON:0006240,1.63e-14,39;UBERON:0003080,3.46e-14,40;UBERON:0003528,7.37e-12,29;UBERON:0002791,7.37e-12,29;UBERON:0001893,7.37e-12,29;UBERON:0000956,3.47e-10,21;UBERON:0001869,3.47e-10,21;UBERON:0000203,3.47e-10,21;UBERON:0002619,2.22e-08,17;UBERON:0000025,9.59e-08,114;UBERON:0004111,4.23e-07,122|phase1_expression=12.0111635328595,0,0.454999239389536,0,0,0,0,1.42035655785734,0.281577444303333,0.70219357896598,1.02730780935303,1.11681022593471,1.02720437958723,0.699363219351979,1.66554880907831,0.607425802169478,0.699561878128147,0.630924330716475,0.959801035240171,0,4.33720779770456,9.53193131528499,7.83599367416806,1.43993180514066,0.91763712426868,0,0,0,0,0,0.221730510655305,0,0,0,0,0.166234645358492,0.408338712524738,0,0.7813353445238,0,0,0,0.485510353031154,5.91715044485213,6.18399280439039,7.89251034295231,23.4717403304412,14.171635164729,11.8630538676615,9.52706505463989,13.0187372111587,14.3752564364972,0.503347818173209,1.45072428402269,5.04140698713696,7.46052364504246,8.30946975822394,8.25075347643908,26.3011399117477,25.3915670050576,31.691570175309,7.45457970552091,18.6751907183339,7.19919773825119,5.93319817540185,6.3943210345149,21.5712079573251,19.9793518767208,12.6501327016343,14.3106294631592,11.7781978356774,21.4238238302853,23.1911967999194,14.4539143073646,11.2139201091337,22.9804696652505,6.60695285996332,7.40586560894089,6.60508093001847,21.8931237632122,25.3420772778675,20.8365348222704,5.58365998002762,3.93933827022176,9.0150966188318,23.2756582524197,21.9252388430619,27.4007185363192,4.01348824665875,5.51672388779534,2.89864488701678,1.72084775396277,0,0,0.649776417447669,0,2.66844398250329,7.6693645160126,8.3131521472918,11.3068663843309,11.4083170019111,6.41632387071589,12.7402619853323,14.2213340630666,0.216491041011214,0.506719730950197,1.01104889002957,1.7127581957859,2.84831672011889,4.89859058913922,6.7659277438793,5.1759131313064,5.30415643688935,4.6724018571313,5.64425794251383,5.02666365318702,1.23597483867187,4.77177877835708,1.76922110389975,7.92657564742305,2.87093973998512,2.90925151881133,3.72783522436244,9.07620470735796,9.84399522023239,1.02182822083437,1.67741174308288,2.39961092397363,1.52484272487678,5.69204429738326,8.23501085073528,32.1675141408933,12.8629996942285,11.2514801225345,12.4672826735736,10.058958310201,15.6832620329487,5.59831367745419,3.53811861807145,2.73574412652416,6.37590170517248,9.42598628177239,12.6043490863744,6.17889753126432,10.0013653752452,8.83984669965463,11.056803498048,7.24369438069244,5.38919982332106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| ||
|EntrezGene=68992 | |||
|HGNC= | |||
|MCL_coexpression_id=398 | |||
|UniProt=Q9DB38 | |||
|association_with_transcript=0bp_to_ENSMUST00000069324,NM_026900,uc009ezp.2_5end | |||
|description=CAGE_peak_1_at_Zfp580_5end | |||
|id=chr7:5003117..5003159,+ | |||
|ontology_enrichment_celltype=CL:0000221!3.21e-15!44;CL:0000133!3.21e-15!44;CL:0002319!8.15e-15!43;CL:0000055!5.45e-14!50;CL:0000540!9.31e-12!33;CL:0000047!9.31e-12!33;CL:0000031!9.31e-12!33;CL:0000404!9.31e-12!33;CL:0000393!1.35e-11!39;CL:0000211!1.35e-11!39;CL:0000117!2.24e-09!23;CL:0000337!2.24e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.97e-15,44;CL:0000133,2.97e-15,44;CL:0002319,7.55e-15,43;CL:0000540,8.78e-12,33;CL:0000047,8.78e-12,33;CL:0000031,8.78e-12,33;CL:0000404,8.78e-12,33;CL:0000393,1.28e-11,39;CL:0000211,1.28e-11,39;CL:0000117,2.14e-09,23;CL:0000337,2.14e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.88e-27!73;UBERON:0005743!8.88e-27!73;UBERON:0000073!7.36e-26!75;UBERON:0001016!7.36e-26!75;UBERON:0004121!4.20e-22!102;UBERON:0000924!4.20e-22!102;UBERON:0006601!4.20e-22!102;UBERON:0001049!6.73e-19!52;UBERON:0005068!6.73e-19!52;UBERON:0006241!6.73e-19!52;UBERON:0007135!6.73e-19!52;UBERON:0002346!3.40e-18!71;UBERON:0003075!3.40e-18!71;UBERON:0007284!3.40e-18!71;UBERON:0000033!5.44e-16!63;UBERON:0000955!9.55e-16!50;UBERON:0006238!9.55e-16!50;UBERON:0002616!3.38e-15!49;UBERON:0002020!5.67e-15!34;UBERON:0003056!1.13e-14!49;UBERON:0002780!1.76e-14!39;UBERON:0001890!1.76e-14!39;UBERON:0006240!1.76e-14!39;UBERON:0003080!3.72e-14!40;UBERON:0002791!7.82e-12!29;UBERON:0003528!7.82e-12!29;UBERON:0001893!7.82e-12!29;UBERON:0000956!3.65e-10!21;UBERON:0001869!3.65e-10!21;UBERON:0000203!3.65e-10!21;UBERON:0000153!3.25e-09!94;UBERON:0007811!4.38e-09!86;UBERON:0002619!2.31e-08!17;UBERON:0000025!9.23e-08!114;UBERON:0004111!3.92e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.68e-27,73;UBERON:0001016,6.40e-26,75;UBERON:0004121,9.27e-24,95;UBERON:0000924,9.27e-24,95;UBERON:0006601,9.27e-24,95;UBERON:0002346,2.63e-20,64;UBERON:0003075,2.63e-20,64;UBERON:0007284,2.63e-20,64;UBERON:0010371,1.20e-19,73;UBERON:0001049,6.09e-19,52;UBERON:0005068,6.09e-19,52;UBERON:0006241,6.09e-19,52;UBERON:0007135,6.09e-19,52;UBERON:0000073,2.11e-18,54;UBERON:0010314,1.68e-16,92;UBERON:0000955,4.22e-16,47;UBERON:0006238,4.22e-16,47;UBERON:0002616,1.52e-15,46;UBERON:0002020,5.25e-15,34;UBERON:0003056,1.04e-14,49;UBERON:0002780,1.63e-14,39;UBERON:0001890,1.63e-14,39;UBERON:0006240,1.63e-14,39;UBERON:0003080,3.46e-14,40;UBERON:0003528,7.37e-12,29;UBERON:0002791,7.37e-12,29;UBERON:0001893,7.37e-12,29;UBERON:0000956,3.47e-10,21;UBERON:0001869,3.47e-10,21;UBERON:0000203,3.47e-10,21;UBERON:0002619,2.22e-08,17;UBERON:0000025,9.59e-08,114;UBERON:0004111,4.23e-07,122 | |||
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| |||
|short_description=p1@Zfp580 | |||
}} |
Revision as of 13:30, 14 September 2013
Short description: | p1@Zfp580 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zfp580_5end |
Coexpression cluster: | MCL_coexpression_mm9:398 |
Association with transcript: | 0bp_to_ENSMUST00000069324, NM_026900, uc009ezp.2_5end |
EntrezGene: | Zfp580 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.97e-15 | 44 |
neurectodermal cell | 2.97e-15 | 44 |
neural cell | 7.55e-15 | 43 |
neuron | 8.78e-12 | 33 |
neuronal stem cell | 8.78e-12 | 33 |
neuroblast | 8.78e-12 | 33 |
electrically signaling cell | 8.78e-12 | 33 |
electrically responsive cell | 1.28e-11 | 39 |
electrically active cell | 1.28e-11 | 39 |
CNS neuron (sensu Vertebrata) | 2.14e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.14e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.68e-27 | 73 |
nervous system | 6.40e-26 | 75 |
ectoderm-derived structure | 9.27e-24 | 95 |
ectoderm | 9.27e-24 | 95 |
presumptive ectoderm | 9.27e-24 | 95 |
neurectoderm | 2.63e-20 | 64 |
neural plate | 2.63e-20 | 64 |
presumptive neural plate | 2.63e-20 | 64 |
ecto-epithelium | 1.20e-19 | 73 |
neural tube | 6.09e-19 | 52 |
neural rod | 6.09e-19 | 52 |
future spinal cord | 6.09e-19 | 52 |
neural keel | 6.09e-19 | 52 |
regional part of nervous system | 2.11e-18 | 54 |
structure with developmental contribution from neural crest | 1.68e-16 | 92 |
brain | 4.22e-16 | 47 |
future brain | 4.22e-16 | 47 |
regional part of brain | 1.52e-15 | 46 |
gray matter | 5.25e-15 | 34 |
pre-chordal neural plate | 1.04e-14 | 49 |
regional part of forebrain | 1.63e-14 | 39 |
forebrain | 1.63e-14 | 39 |
future forebrain | 1.63e-14 | 39 |
anterior neural tube | 3.46e-14 | 40 |
brain grey matter | 7.37e-12 | 29 |
regional part of telencephalon | 7.37e-12 | 29 |
telencephalon | 7.37e-12 | 29 |
cerebral cortex | 3.47e-10 | 21 |
cerebral hemisphere | 3.47e-10 | 21 |
pallium | 3.47e-10 | 21 |
regional part of cerebral cortex | 2.22e-08 | 17 |
tube | 9.59e-08 | 114 |
anatomical conduit | 4.23e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.