FFCP PHASE1:Mm9::chr7:89079202..89079349,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=29877|HGNC=|MCL_coexpression_id=13|UniProt=Q9JMG7,Q3TR90|association_with_transcript=0bp_to_ENSMUST00000026094,NM_013886,uc009icr.1,uc009ics.1,uc009ict.1_5end|description=CAGE_peak_1_at_Hdgfrp3_5end|id=chr7:89079202..89079349,-|ontology_enrichment_celltype=CL:0000117!3.86e-15!23;CL:0000337!3.86e-15!23;CL:0000540!1.49e-12!33;CL:0000047!1.49e-12!33;CL:0000031!1.49e-12!33;CL:0000404!1.49e-12!33;CL:0000393!2.11e-12!39;CL:0000211!2.11e-12!39;CL:0000221!5.17e-10!44;CL:0000133!5.17e-10!44;CL:0002319!1.02e-09!43;CL:0000055!2.02e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.61e-15,23;CL:0000337,3.61e-15,23;CL:0000540,1.41e-12,33;CL:0000047,1.41e-12,33;CL:0000031,1.41e-12,33;CL:0000404,1.41e-12,33;CL:0000393,2.00e-12,39;CL:0000211,2.00e-12,39;CL:0000221,4.97e-10,44;CL:0000133,4.97e-10,44;CL:0002319,9.82e-10,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.47e-24!63;UBERON:0000073!1.08e-23!75;UBERON:0001016!1.08e-23!75;UBERON:0001017!2.77e-23!73;UBERON:0005743!2.77e-23!73;UBERON:0002346!8.80e-23!71;UBERON:0003075!8.80e-23!71;UBERON:0007284!8.80e-23!71;UBERON:0001049!2.05e-22!52;UBERON:0005068!2.05e-22!52;UBERON:0006241!2.05e-22!52;UBERON:0007135!2.05e-22!52;UBERON:0004121!1.01e-21!102;UBERON:0000924!1.01e-21!102;UBERON:0006601!1.01e-21!102;UBERON:0003056!1.59e-21!49;UBERON:0000955!2.50e-21!50;UBERON:0006238!2.50e-21!50;UBERON:0002616!1.15e-20!49;UBERON:0003080!2.55e-18!40;UBERON:0002020!5.16e-18!34;UBERON:0002780!8.38e-18!39;UBERON:0001890!8.38e-18!39;UBERON:0006240!8.38e-18!39;UBERON:0000153!9.45e-17!94;UBERON:0007811!1.65e-15!86;UBERON:0002791!5.69e-15!29;UBERON:0003528!5.69e-15!29;UBERON:0001893!5.69e-15!29;UBERON:0000956!3.94e-10!21;UBERON:0001869!3.94e-10!21;UBERON:0000203!3.94e-10!21;UBERON:0004111!2.61e-08!122;UBERON:0002619!5.47e-08!17;UBERON:0000025!1.21e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.20e-25,64;UBERON:0003075,1.20e-25,64;UBERON:0007284,1.20e-25,64;UBERON:0000073,6.31e-24,54;UBERON:0001016,9.71e-24,75;UBERON:0010371,1.19e-23,73;UBERON:0004121,1.42e-23,95;UBERON:0000924,1.42e-23,95;UBERON:0006601,1.42e-23,95;UBERON:0001017,2.50e-23,73;UBERON:0001049,1.85e-22,52;UBERON:0005068,1.85e-22,52;UBERON:0006241,1.85e-22,52;UBERON:0007135,1.85e-22,52;UBERON:0003056,1.44e-21,49;UBERON:0010314,1.46e-21,92;UBERON:0000955,1.64e-19,47;UBERON:0006238,1.64e-19,47;UBERON:0002616,7.34e-19,46;UBERON:0003080,2.36e-18,40;UBERON:0002020,4.76e-18,34;UBERON:0002780,7.75e-18,39;UBERON:0001890,7.75e-18,39;UBERON:0006240,7.75e-18,39;UBERON:0003528,5.34e-15,29;UBERON:0002791,5.34e-15,29;UBERON:0001893,5.34e-15,29;UBERON:0000956,3.78e-10,21;UBERON:0001869,3.78e-10,21;UBERON:0000203,3.78e-10,21;UBERON:0004111,4.21e-08,122;UBERON:0002619,5.30e-08,17;UBERON:0000025,1.93e-07,114|phase1_expression=32.0297694209588,0,0.454999239389536,0,0,0,0,3.09895976259783,13.093351160105,4.68129052643987,6.33506482434368,1.67521533890206,3.25281386869291,1.48614684112296,0,0.607425802169478,0,0.630924330716475,0.411343300817216,1.27316895539409,16.8385714499118,0.595745707205312,0,0,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.5283558738237,18.1464706882931,20.3736894899467,13.3006528539167,6.32272953503295,7.24964403023757,9.13820525649132,8.9591309840232,1.43752564364972,0.167782606057736,5.07753499407941,8.73843877770406,6.94600477297057,10.601737277734,9.28209766099396,66.7644320836673,69.2978182846363,62.1154775436056,6.77689064138264,9.78224275722253,0,0,0,6.2916023208865,6.14749288514487,42.5127410464758,39.0167161778586,39.9617426567626,35.4207220660716,36.001572175113,50.8336816742059,57.4114371399236,44.122501757281,39.6417171597799,38.4338887636415,46.3891730433855,67.6576656055894,72.7326766639157,62.5096044668112,29.0350318961436,38.2678574821542,41.4083251475155,51.5600024578918,45.8436812173111,62.4438143514757,23.4751199332871,12.9227367782603,10.4351215932604,2.58127163094416,0,0,0,0,4.35377702408431,9.37366774179318,8.05336614268893,4.24007489412408,21.4081998060554,16.6824420638613,17.8363667794652,14.2213340630666,1.29894624606728,0.760079596425296,1.51657333504435,4.33898742932428,4.40194402200192,8.90652834388949,7.63335437770998,7.61163695780353,7.14908041493781,7.38540938707851,11.4061045921634,6.28332956648377,1.23597483867187,10.4111536982336,2.65383165584962,9.38247729694973,3.5334642953663,2.42437626567611,1.86391761218122,18.737971008739,17.5935233723302,3.57639877292028,3.11519323715393,1.19980546198682,0.635351135365324,34.9012189813237,39.8025524452205,70.9947089437684,35.9816342798012,30.4301394223093,33.0382990849701,39.2623856623973,28.005825058837,5.72272064806428,13.3943061969848,11.3638602178696,20.5590299881072,21.6107978167465,26.4691330813863,23.5099515823715,43.0671039627905,33.4376809943458,37.1058829256526,18.6266426932091,23.9280472155455,22.3145174598027,23.5774506379691,20.8235945806196,19.1852601965663,9.75106066262066,11.1122353660289,20.3014952154863,0,0.257347907114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| ||
|EntrezGene=29877 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=Q9JMG7,Q3TR90 | |||
|association_with_transcript=0bp_to_ENSMUST00000026094,NM_013886,uc009icr.1,uc009ics.1,uc009ict.1_5end | |||
|description=CAGE_peak_1_at_Hdgfrp3_5end | |||
|id=chr7:89079202..89079349,- | |||
|ontology_enrichment_celltype=CL:0000117!3.86e-15!23;CL:0000337!3.86e-15!23;CL:0000540!1.49e-12!33;CL:0000047!1.49e-12!33;CL:0000031!1.49e-12!33;CL:0000404!1.49e-12!33;CL:0000393!2.11e-12!39;CL:0000211!2.11e-12!39;CL:0000221!5.17e-10!44;CL:0000133!5.17e-10!44;CL:0002319!1.02e-09!43;CL:0000055!2.02e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.61e-15,23;CL:0000337,3.61e-15,23;CL:0000540,1.41e-12,33;CL:0000047,1.41e-12,33;CL:0000031,1.41e-12,33;CL:0000404,1.41e-12,33;CL:0000393,2.00e-12,39;CL:0000211,2.00e-12,39;CL:0000221,4.97e-10,44;CL:0000133,4.97e-10,44;CL:0002319,9.82e-10,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.47e-24!63;UBERON:0000073!1.08e-23!75;UBERON:0001016!1.08e-23!75;UBERON:0001017!2.77e-23!73;UBERON:0005743!2.77e-23!73;UBERON:0002346!8.80e-23!71;UBERON:0003075!8.80e-23!71;UBERON:0007284!8.80e-23!71;UBERON:0001049!2.05e-22!52;UBERON:0005068!2.05e-22!52;UBERON:0006241!2.05e-22!52;UBERON:0007135!2.05e-22!52;UBERON:0004121!1.01e-21!102;UBERON:0000924!1.01e-21!102;UBERON:0006601!1.01e-21!102;UBERON:0003056!1.59e-21!49;UBERON:0000955!2.50e-21!50;UBERON:0006238!2.50e-21!50;UBERON:0002616!1.15e-20!49;UBERON:0003080!2.55e-18!40;UBERON:0002020!5.16e-18!34;UBERON:0002780!8.38e-18!39;UBERON:0001890!8.38e-18!39;UBERON:0006240!8.38e-18!39;UBERON:0000153!9.45e-17!94;UBERON:0007811!1.65e-15!86;UBERON:0002791!5.69e-15!29;UBERON:0003528!5.69e-15!29;UBERON:0001893!5.69e-15!29;UBERON:0000956!3.94e-10!21;UBERON:0001869!3.94e-10!21;UBERON:0000203!3.94e-10!21;UBERON:0004111!2.61e-08!122;UBERON:0002619!5.47e-08!17;UBERON:0000025!1.21e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.20e-25,64;UBERON:0003075,1.20e-25,64;UBERON:0007284,1.20e-25,64;UBERON:0000073,6.31e-24,54;UBERON:0001016,9.71e-24,75;UBERON:0010371,1.19e-23,73;UBERON:0004121,1.42e-23,95;UBERON:0000924,1.42e-23,95;UBERON:0006601,1.42e-23,95;UBERON:0001017,2.50e-23,73;UBERON:0001049,1.85e-22,52;UBERON:0005068,1.85e-22,52;UBERON:0006241,1.85e-22,52;UBERON:0007135,1.85e-22,52;UBERON:0003056,1.44e-21,49;UBERON:0010314,1.46e-21,92;UBERON:0000955,1.64e-19,47;UBERON:0006238,1.64e-19,47;UBERON:0002616,7.34e-19,46;UBERON:0003080,2.36e-18,40;UBERON:0002020,4.76e-18,34;UBERON:0002780,7.75e-18,39;UBERON:0001890,7.75e-18,39;UBERON:0006240,7.75e-18,39;UBERON:0003528,5.34e-15,29;UBERON:0002791,5.34e-15,29;UBERON:0001893,5.34e-15,29;UBERON:0000956,3.78e-10,21;UBERON:0001869,3.78e-10,21;UBERON:0000203,3.78e-10,21;UBERON:0004111,4.21e-08,122;UBERON:0002619,5.30e-08,17;UBERON:0000025,1.93e-07,114 | |||
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| |||
|short_description=p1@Hdgfrp3 | |||
}} |
Revision as of 14:22, 14 September 2013
Short description: | p1@Hdgfrp3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hdgfrp3_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000026094, NM_013886, uc009icr.1, uc009ics.1, uc009ict.1_5end |
EntrezGene: | Hdgfrp3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.61e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.61e-15 | 23 |
neuron | 1.41e-12 | 33 |
neuronal stem cell | 1.41e-12 | 33 |
neuroblast | 1.41e-12 | 33 |
electrically signaling cell | 1.41e-12 | 33 |
electrically responsive cell | 2.00e-12 | 39 |
electrically active cell | 2.00e-12 | 39 |
ectodermal cell | 4.97e-10 | 44 |
neurectodermal cell | 4.97e-10 | 44 |
neural cell | 9.82e-10 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.20e-25 | 64 |
neural plate | 1.20e-25 | 64 |
presumptive neural plate | 1.20e-25 | 64 |
regional part of nervous system | 6.31e-24 | 54 |
nervous system | 9.71e-24 | 75 |
ecto-epithelium | 1.19e-23 | 73 |
ectoderm-derived structure | 1.42e-23 | 95 |
ectoderm | 1.42e-23 | 95 |
presumptive ectoderm | 1.42e-23 | 95 |
central nervous system | 2.50e-23 | 73 |
neural tube | 1.85e-22 | 52 |
neural rod | 1.85e-22 | 52 |
future spinal cord | 1.85e-22 | 52 |
neural keel | 1.85e-22 | 52 |
pre-chordal neural plate | 1.44e-21 | 49 |
structure with developmental contribution from neural crest | 1.46e-21 | 92 |
brain | 1.64e-19 | 47 |
future brain | 1.64e-19 | 47 |
regional part of brain | 7.34e-19 | 46 |
anterior neural tube | 2.36e-18 | 40 |
gray matter | 4.76e-18 | 34 |
regional part of forebrain | 7.75e-18 | 39 |
forebrain | 7.75e-18 | 39 |
future forebrain | 7.75e-18 | 39 |
brain grey matter | 5.34e-15 | 29 |
regional part of telencephalon | 5.34e-15 | 29 |
telencephalon | 5.34e-15 | 29 |
cerebral cortex | 3.78e-10 | 21 |
cerebral hemisphere | 3.78e-10 | 21 |
pallium | 3.78e-10 | 21 |
anatomical conduit | 4.21e-08 | 122 |
regional part of cerebral cortex | 5.30e-08 | 17 |
tube | 1.93e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.