FFCP PHASE1:Mm9::chr8:126545419..126545430,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=382038|HGNC=|MCL_coexpression_id=118|UniProt=G3UX45|association_with_transcript=11bp_to_ENSMUST00000173168,uc012gmt.1_5end|description=CAGE_peak_4_at_Urb2_5end|id=chr8:126545419..126545430,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000791,3.25e-08,9;CL:0000789,3.25e-08,9;CL:0002420,3.25e-08,9;CL:0002419,3.25e-08,9;CL:0000790,3.25e-08,9;CL:0000893,1.60e-07,6;CL:0002489,1.60e-07,6;CL:0000898,1.60e-07,6;CL:0000809,1.60e-07,6;CL:0000810,1.60e-07,6;CL:0000895,1.60e-07,6;CL:0000808,1.60e-07,6;CL:0000894,1.60e-07,6;CL:0000806,1.60e-07,6;CL:0000807,1.60e-07,6;CL:0000805,1.60e-07,6;CL:0002425,1.60e-07,6;CL:0002436,1.60e-07,6;CL:0002427,1.60e-07,6;CL:0002428,1.60e-07,6;CL:0002429,1.60e-07,6;CL:0002433,1.60e-07,6;CL:0002431,1.60e-07,6;CL:0002432,1.60e-07,6;CL:0000084,9.72e-07,11;CL:0000827,9.72e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002370!5.50e-14!23;UBERON:0000974!5.50e-14!23;UBERON:0004807!5.50e-14!23;UBERON:0005058!5.50e-14!23;UBERON:0003351!5.50e-14!23;UBERON:0009113!5.50e-14!23;UBERON:0003295!5.50e-14!23;UBERON:0009722!5.50e-14!23;UBERON:0005562!5.50e-14!23;UBERON:0007690!5.50e-14!23;UBERON:0006562!5.64e-13!24;UBERON:0003408!5.64e-13!24;UBERON:0001557!5.64e-13!24;UBERON:0001042!5.64e-13!24;UBERON:0008814!5.64e-13!24;UBERON:0009145!5.64e-13!24;UBERON:0004177!6.77e-12!29;UBERON:0000072!1.98e-11!27;UBERON:0000063!2.47e-09!35;UBERON:0002390!2.11e-07!45;UBERON:0003061!2.11e-07!45;UBERON:0005057!6.05e-07!51;UBERON:0002193!9.10e-07!48|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.73e-26,23;UBERON:0000974,3.73e-26,23;UBERON:0004807,3.73e-26,23;UBERON:0005058,3.73e-26,23;UBERON:0003351,3.73e-26,23;UBERON:0009113,3.73e-26,23;UBERON:0003295,3.73e-26,23;UBERON:0009722,3.73e-26,23;UBERON:0005562,3.73e-26,23;UBERON:0007690,3.73e-26,23;UBERON:0006562,5.47e-25,24;UBERON:0003408,5.47e-25,24;UBERON:0001557,5.47e-25,24;UBERON:0001042,5.47e-25,24;UBERON:0008814,5.47e-25,24;UBERON:0009145,5.47e-25,24;UBERON:0000072,5.25e-22,27;UBERON:0004177,2.33e-20,29;UBERON:0005057,2.33e-20,29;UBERON:0000077,1.52e-16,35;UBERON:0007811,4.93e-16,36;UBERON:0002390,1.16e-14,45;UBERON:0003061,1.16e-14,45;UBERON:0000065,7.62e-14,41;UBERON:0002193,1.29e-13,48;UBERON:0002405,1.29e-13,48;UBERON:0001004,1.81e-13,42;UBERON:0000153,4.13e-13,43;UBERON:0003929,1.16e-11,55;UBERON:0002368,1.64e-10,60;UBERON:0002530,1.54e-09,65;UBERON:0000490,2.32e-09,66;UBERON:0005911,7.35e-09,69;UBERON:0000949,2.11e-08,72;UBERON:0001041,2.41e-07,80;UBERON:0000926,4.56e-07,120;UBERON:0004120,4.56e-07,120;UBERON:0006603,4.56e-07,120|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,3.51971805379167,6.08567768437183,0.856089841127525,1.03703806693937,0.342401459862411,0.611942816932982,0,0,0,0.157731082679119,0.137114433605739,0,0.680346321208558,0.297872853602656,0.261199789138935,0.159992422793407,0,0,0,0,0,0,0.221730510655305,0.635030673459631,1.23012957516914,0,0,0.166234645358492,0,0.418531630736908,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0,0,0,0.167782606057736,0.725362142011344,1.00828139742739,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0.287536413054709,0,0,0.127687338085188,0.153606533256243,0,0.457438218012048,0,0,0.56276261003168,0,0,0.427115042397309,0.372798891650601,0.151452386666368,0,0.579728977403356,0,1.3599426674155,0,0,0,0,0,0,0.35333957451034,0.14084341977668,1.28326477414318,0,0,0.216491041011214,0,0,0.11418387971906,0,0,0,0.304465478312141,0,0,0,0,0,0.144599356919912,0,0,0,0,1.86391761218122,0,0.209446706813455,0.255457055208591,0.359445373517761,0.599902730993408,0.127070227073065,0.149790639404823,0,0.125654352112864,0.347648640384553,0,0,0,0.101839363850316,0,0,0,0.130120442962704,0.229902104433473,0,0,0.0680364991513279,0.12811372028485,0.0937017245597288,0,0.431135985865684,0.378212160335639,0.527853372491847,0,0,0.348252166522167,0,0,0,1.02939162845886,0.284163499395593,0.207125772535502,0,0,0.473489471170421,0.196764231747404,0.154267112887378,0,0,0.233530684734339,0,0,0.162137619091711,0,0.219550115291051,0,0,0,0,0.264450566663544,0.213288250535234,0.232236671860439,0,0.403367049246685,0,0,0,0.164698954724011,0.251335208800269,0,0.19496408711912,0,0,0.199141273254367,0.379335801906163,0.114248512609729,0,0,0,0.210407459670956,0,0,0,0.123397163921801,0,0.500535317148282,0.196558995113203,0,0,0.241177159752417,0,0,0,0.274561413188081,0,0,0.312037673114561,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0.144649058581512,0,0.54390568381871,0,0,0,0,0,0,0,0.780877488593277,0.215423397732799,0.238968797952552,0,0,0,0,0,0,0,0.178065603667255,0,0.164970122972535,0,0,0.302323556964751,0,0,0,0.258428293168221,0,0,0,0,0,0,0.18006109403131,0,0,0,0,0,0,0.23467170806371,0,0,0.16488625294148,0.322928853391811,0.120625849856312,0.238744688006273,0,0.291480836629851,0.370850604021019,0,0,0,0.376736914009382,0.136694227721025,0.228778173206523,0.339956859987711,0.279902904647316,0.138199973804424,0.954670618015114,0.158167996790568,0,0,0,0,0,0,0,0,0,2.25477175473676,0.448549638131936,0.496375471371293,0.194451188344048,0.129159823477731,0.168956125490778,0.58678619322877,0.5208175393758,0.838874755405687,2.17425708743405,2.88030006257865,0.316011120628178,0.405450430580328,1.02710957164827,0.77952493786677,0.895133478337407,0.993406773906324,1.44234539423963,2.06765338044408,1.51449674922221,1.67654974641,0.907435666231565,1.55932609183604,1.05833025804362,1.40252282617883,0,0.443971906748129,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0.341467211508268,0,0,0,0.222246727801615,0,0,0,0.50695859978048,0,0.0936415074698824,0.192075457214608,0.114870937911227,0,0,0.192909220463705,0.412085900803307,0,0.342869252385415,0.177475806159338,0,0.436039249896986,0.0941093804153306,0.169229215783353,0.182927972872773,0,0,0,0.237270036248348,0.197008964751127,0,0,0.385813221962283,0,0.233931608445408,0,0.382576664137687,0,0|short_description=p4@Urb2}} | ||
|EntrezGene=382038 | |||
|HGNC= | |||
|MCL_coexpression_id=118 | |||
|UniProt=G3UX45 | |||
|association_with_transcript=11bp_to_ENSMUST00000173168,uc012gmt.1_5end | |||
|description=CAGE_peak_4_at_Urb2_5end | |||
|id=chr8:126545419..126545430,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.25e-08,9;CL:0000789,3.25e-08,9;CL:0002420,3.25e-08,9;CL:0002419,3.25e-08,9;CL:0000790,3.25e-08,9;CL:0000893,1.60e-07,6;CL:0002489,1.60e-07,6;CL:0000898,1.60e-07,6;CL:0000809,1.60e-07,6;CL:0000810,1.60e-07,6;CL:0000895,1.60e-07,6;CL:0000808,1.60e-07,6;CL:0000894,1.60e-07,6;CL:0000806,1.60e-07,6;CL:0000807,1.60e-07,6;CL:0000805,1.60e-07,6;CL:0002425,1.60e-07,6;CL:0002436,1.60e-07,6;CL:0002427,1.60e-07,6;CL:0002428,1.60e-07,6;CL:0002429,1.60e-07,6;CL:0002433,1.60e-07,6;CL:0002431,1.60e-07,6;CL:0002432,1.60e-07,6;CL:0000084,9.72e-07,11;CL:0000827,9.72e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!5.50e-14!23;UBERON:0000974!5.50e-14!23;UBERON:0004807!5.50e-14!23;UBERON:0005058!5.50e-14!23;UBERON:0003351!5.50e-14!23;UBERON:0009113!5.50e-14!23;UBERON:0003295!5.50e-14!23;UBERON:0009722!5.50e-14!23;UBERON:0005562!5.50e-14!23;UBERON:0007690!5.50e-14!23;UBERON:0006562!5.64e-13!24;UBERON:0003408!5.64e-13!24;UBERON:0001557!5.64e-13!24;UBERON:0001042!5.64e-13!24;UBERON:0008814!5.64e-13!24;UBERON:0009145!5.64e-13!24;UBERON:0004177!6.77e-12!29;UBERON:0000072!1.98e-11!27;UBERON:0000063!2.47e-09!35;UBERON:0002390!2.11e-07!45;UBERON:0003061!2.11e-07!45;UBERON:0005057!6.05e-07!51;UBERON:0002193!9.10e-07!48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.73e-26,23;UBERON:0000974,3.73e-26,23;UBERON:0004807,3.73e-26,23;UBERON:0005058,3.73e-26,23;UBERON:0003351,3.73e-26,23;UBERON:0009113,3.73e-26,23;UBERON:0003295,3.73e-26,23;UBERON:0009722,3.73e-26,23;UBERON:0005562,3.73e-26,23;UBERON:0007690,3.73e-26,23;UBERON:0006562,5.47e-25,24;UBERON:0003408,5.47e-25,24;UBERON:0001557,5.47e-25,24;UBERON:0001042,5.47e-25,24;UBERON:0008814,5.47e-25,24;UBERON:0009145,5.47e-25,24;UBERON:0000072,5.25e-22,27;UBERON:0004177,2.33e-20,29;UBERON:0005057,2.33e-20,29;UBERON:0000077,1.52e-16,35;UBERON:0007811,4.93e-16,36;UBERON:0002390,1.16e-14,45;UBERON:0003061,1.16e-14,45;UBERON:0000065,7.62e-14,41;UBERON:0002193,1.29e-13,48;UBERON:0002405,1.29e-13,48;UBERON:0001004,1.81e-13,42;UBERON:0000153,4.13e-13,43;UBERON:0003929,1.16e-11,55;UBERON:0002368,1.64e-10,60;UBERON:0002530,1.54e-09,65;UBERON:0000490,2.32e-09,66;UBERON:0005911,7.35e-09,69;UBERON:0000949,2.11e-08,72;UBERON:0001041,2.41e-07,80;UBERON:0000926,4.56e-07,120;UBERON:0004120,4.56e-07,120;UBERON:0006603,4.56e-07,120 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,3.51971805379167,6.08567768437183,0.856089841127525,1.03703806693937,0.342401459862411,0.611942816932982,0,0,0,0.157731082679119,0.137114433605739,0,0.680346321208558,0.297872853602656,0.261199789138935,0.159992422793407,0,0,0,0,0,0,0.221730510655305,0.635030673459631,1.23012957516914,0,0,0.166234645358492,0,0.418531630736908,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0,0,0,0.167782606057736,0.725362142011344,1.00828139742739,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0.287536413054709,0,0,0.127687338085188,0.153606533256243,0,0.457438218012048,0,0,0.56276261003168,0,0,0.427115042397309,0.372798891650601,0.151452386666368,0,0.579728977403356,0,1.3599426674155,0,0,0,0,0,0,0.35333957451034,0.14084341977668,1.28326477414318,0,0,0.216491041011214,0,0,0.11418387971906,0,0,0,0.304465478312141,0,0,0,0,0,0.144599356919912,0,0,0,0,1.86391761218122,0,0.209446706813455,0.255457055208591,0.359445373517761,0.599902730993408,0.127070227073065,0.149790639404823,0,0.125654352112864,0.347648640384553,0,0,0,0.101839363850316,0,0,0,0.130120442962704,0.229902104433473,0,0,0.0680364991513279,0.12811372028485,0.0937017245597288,0,0.431135985865684,0.378212160335639,0.527853372491847,0,0,0.348252166522167,0,0,0,1.02939162845886,0.284163499395593,0.207125772535502,0,0,0.473489471170421,0.196764231747404,0.154267112887378,0,0,0.233530684734339,0,0,0.162137619091711,0,0.219550115291051,0,0,0,0,0.264450566663544,0.213288250535234,0.232236671860439,0,0.403367049246685,0,0,0,0.164698954724011,0.251335208800269,0,0.19496408711912,0,0,0.199141273254367,0.379335801906163,0.114248512609729,0,0,0,0.210407459670956,0,0,0,0.123397163921801,0,0.500535317148282,0.196558995113203,0,0,0.241177159752417,0,0,0,0.274561413188081,0,0,0.312037673114561,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0.144649058581512,0,0.54390568381871,0,0,0,0,0,0,0,0.780877488593277,0.215423397732799,0.238968797952552,0,0,0,0,0,0,0,0.178065603667255,0,0.164970122972535,0,0,0.302323556964751,0,0,0,0.258428293168221,0,0,0,0,0,0,0.18006109403131,0,0,0,0,0,0,0.23467170806371,0,0,0.16488625294148,0.322928853391811,0.120625849856312,0.238744688006273,0,0.291480836629851,0.370850604021019,0,0,0,0.376736914009382,0.136694227721025,0.228778173206523,0.339956859987711,0.279902904647316,0.138199973804424,0.954670618015114,0.158167996790568,0,0,0,0,0,0,0,0,0,2.25477175473676,0.448549638131936,0.496375471371293,0.194451188344048,0.129159823477731,0.168956125490778,0.58678619322877,0.5208175393758,0.838874755405687,2.17425708743405,2.88030006257865,0.316011120628178,0.405450430580328,1.02710957164827,0.77952493786677,0.895133478337407,0.993406773906324,1.44234539423963,2.06765338044408,1.51449674922221,1.67654974641,0.907435666231565,1.55932609183604,1.05833025804362,1.40252282617883,0,0.443971906748129,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0.341467211508268,0,0,0,0.222246727801615,0,0,0,0.50695859978048,0,0.0936415074698824,0.192075457214608,0.114870937911227,0,0,0.192909220463705,0.412085900803307,0,0.342869252385415,0.177475806159338,0,0.436039249896986,0.0941093804153306,0.169229215783353,0.182927972872773,0,0,0,0.237270036248348,0.197008964751127,0,0,0.385813221962283,0,0.233931608445408,0,0.382576664137687,0,0 | |||
|short_description=p4@Urb2 | |||
}} |
Revision as of 15:07, 14 September 2013
Short description: | p4@Urb2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Urb2_5end |
Coexpression cluster: | MCL_coexpression_mm9:118 |
Association with transcript: | 11bp_to_ENSMUST00000173168, uc012gmt.1_5end |
EntrezGene: | Urb2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.25e-08 | 9 |
alpha-beta T cell | 3.25e-08 | 9 |
immature T cell | 3.25e-08 | 9 |
mature T cell | 3.25e-08 | 9 |
immature alpha-beta T cell | 3.25e-08 | 9 |
thymocyte | 1.60e-07 | 6 |
double negative thymocyte | 1.60e-07 | 6 |
naive T cell | 1.60e-07 | 6 |
double-positive, alpha-beta thymocyte | 1.60e-07 | 6 |
CD4-positive, alpha-beta thymocyte | 1.60e-07 | 6 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.60e-07 | 6 |
DN4 thymocyte | 1.60e-07 | 6 |
DN1 thymic pro-T cell | 1.60e-07 | 6 |
DN2 thymocyte | 1.60e-07 | 6 |
DN3 thymocyte | 1.60e-07 | 6 |
immature single positive thymocyte | 1.60e-07 | 6 |
early T lineage precursor | 1.60e-07 | 6 |
mature CD4 single-positive thymocyte | 1.60e-07 | 6 |
resting double-positive thymocyte | 1.60e-07 | 6 |
double-positive blast | 1.60e-07 | 6 |
CD69-positive double-positive thymocyte | 1.60e-07 | 6 |
CD69-positive, CD4-positive single-positive thymocyte | 1.60e-07 | 6 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.60e-07 | 6 |
CD24-positive, CD4 single-positive thymocyte | 1.60e-07 | 6 |
T cell | 9.72e-07 | 11 |
pro-T cell | 9.72e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.