FFCP PHASE1:Mm9::chr8:87324171..87324182,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18032|HGNC=|UniProt=P70257|association_with_transcript=56bp_to_NM_001081982,NM_010906,uc009mne.1,uc009mnf.1_5end|description=CAGE_peak_6_at_Nfix_5end|id=chr8:87324171..87324182,-|ontology_enrichment_celltype=CL:0000055!3.42e-07!50;CL:0002319!5.47e-07!43;CL:0000221!6.84e-07!44;CL:0000133!6.84e-07!44;CL:0002321!7.53e-07!70;CL:0000220!7.53e-07!70|ontology_enrichment_celltype_v019_2=CL:0002319,2.55e-07,43;CL:0002321,3.42e-07,70;CL:0002453,5.31e-07,8;CL:0000221,6.14e-07,44;CL:0000133,6.14e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.89e-14!73;UBERON:0005743!5.89e-14!73;UBERON:0004111!3.42e-13!122;UBERON:0000073!9.40e-13!75;UBERON:0001016!9.40e-13!75;UBERON:0001049!4.92e-12!52;UBERON:0005068!4.92e-12!52;UBERON:0006241!4.92e-12!52;UBERON:0007135!4.92e-12!52;UBERON:0000033!5.41e-12!63;UBERON:0002020!6.55e-12!34;UBERON:0000955!1.16e-11!50;UBERON:0006238!1.16e-11!50;UBERON:0002616!1.94e-11!49;UBERON:0000025!2.36e-11!114;UBERON:0000956!2.38e-11!21;UBERON:0001869!2.38e-11!21;UBERON:0000203!2.38e-11!21;UBERON:0004121!3.35e-11!102;UBERON:0000924!3.35e-11!102;UBERON:0006601!3.35e-11!102;UBERON:0002791!3.97e-11!29;UBERON:0003528!3.97e-11!29;UBERON:0001893!3.97e-11!29;UBERON:0002619!7.67e-09!17;UBERON:0002346!7.70e-09!71;UBERON:0003075!7.70e-09!71;UBERON:0007284!7.70e-09!71;UBERON:0002780!3.15e-08!39;UBERON:0001890!3.15e-08!39;UBERON:0006240!3.15e-08!39;UBERON:0003080!3.44e-08!40;UBERON:0003056!1.19e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.03e-13,73;UBERON:0004111,1.29e-13,122;UBERON:0000956,1.52e-13,21;UBERON:0001869,1.52e-13,21;UBERON:0000203,1.52e-13,21;UBERON:0002020,4.81e-13,34;UBERON:0004121,7.05e-13,95;UBERON:0000924,7.05e-13,95;UBERON:0006601,7.05e-13,95;UBERON:0001016,7.53e-13,75;UBERON:0000073,1.21e-12,54;UBERON:0001049,3.57e-12,52;UBERON:0005068,3.57e-12,52;UBERON:0006241,3.57e-12,52;UBERON:0007135,3.57e-12,52;UBERON:0003528,5.54e-12,29;UBERON:0002791,5.54e-12,29;UBERON:0001893,5.54e-12,29;UBERON:0000025,7.30e-12,114;UBERON:0002346,3.28e-11,64;UBERON:0003075,3.28e-11,64;UBERON:0007284,3.28e-11,64;UBERON:0010371,4.64e-11,73;UBERON:0000955,1.20e-10,47;UBERON:0006238,1.20e-10,47;UBERON:0002616,2.25e-10,46;UBERON:0002619,2.39e-10,17;UBERON:0002780,5.04e-08,39;UBERON:0001890,5.04e-08,39;UBERON:0006240,5.04e-08,39;UBERON:0003080,1.38e-07,40;UBERON:0010314,5.36e-07,92;UBERON:0003056,5.97e-07,49|phase1_expression=1.44133962394315,0,0.454999239389536,0,0,0,0.233612640595526,0,0.281577444303333,0,0,0.0797721589953364,0,0.0874204024189974,0,0,0.699561878128147,0,0,0,1.87095238332354,0.0992909512008853,0,0,0,0.57423196411502,0.86152399231815,0.430942465371778,0,0.252030129759931,0,0,0,0,2.02196133825892,0.498703936075477,1.22501613757421,0,0,0,0,0,0,1.51076181570693,1.72340783073175,1.65192076945513,3.12956537739216,5.01457859675027,8.5677611266444,4.27745777963423,3.3596741190087,4.31257693094915,0,0,0,0.771778308107841,0.573066879877513,0.515672092277442,0.404632921719196,0,1.90149421051854,0.677689064138264,1.77858959222228,0.449949858640699,0.988866362566974,0,1.49800055259202,8.06858441175265,5.80661828927475,4.86021377994086,5.25812403378455,1.14260393761521,1.54607978666129,1.46988959057945,1.15014565221884,3.67687514644008,2.20231761998777,1.78762273319263,1.53606533256243,0.923204014111357,0.731901148819277,1.56274011167028,1.67509799400829,1.68828783009504,1.37518422999129,1.47314292736834,2.27794689278565,1.3047961207771,0.075726193333184,0,1.15945795480671,0.860423876981386,2.719885334831,2.69851595818909,1.94932925234301,4.03224198387602,1.68533304158102,1.70430322578058,0.779358013808606,1.7666978725517,0.704217098883403,2.56652954828636,2.54805239706646,0,0.865964164044856,1.01343946190039,1.51657333504435,1.59857431606684,0.517875767294343,0,0.346970653532272,0.304465478312141,0,0,0.470354828542819,0.502666365318702,0,2.4581890676385,0.884610551949874,3.07357014900077,3.75430581382669,2.42437626567611,0,6.44117753425404,3.56059401582874,0.255457055208591,0.239630249011841,0,0.254140454146129,0.898743836428936,0.457500602818626,1.7591609295801,3.82413504423008,4.34716277461562,0.62336413367868,1.62241263067758,2.03678727700633,1.36847667671102,0.252722758433675,1.26265113531884,0.130120442962704,0.459804208866946,0.540186389416048,0.30140963567143,1.2246569847239,1.5373646434182,1.40552586839593,1.55222022443409,0.646703978798527,0.567318240503458,1.40760899331159,1.09597866213787,1.94633074457919,2.43776516565517,1.02891068203972,0,0,0.257347907114715,0,0.207125772535502,0,0.180062061461015,0.946978942340841,0,0.617068451549513,0,0.804820204198858,0.467061369468678,0.658239399653922,1.47750717671186,2.75633952455909,3.07019973593198,1.53685080703735,2.01309628140558,2.10289948564127,6.68879980465349,0,0.264450566663544,0,0.232236671860439,0.515469845288373,0.403367049246685,0.444756087689741,0,0,0.164698954724011,1.25667604400135,1.1937388322469,0,0,0.432276099749388,0.398282546508734,0,0,0,0,0,0.56108655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| ||
|EntrezGene=18032 | |||
|HGNC= | |||
|UniProt=P70257 | |||
|association_with_transcript=56bp_to_NM_001081982,NM_010906,uc009mne.1,uc009mnf.1_5end | |||
|description=CAGE_peak_6_at_Nfix_5end | |||
|id=chr8:87324171..87324182,- | |||
|ontology_enrichment_celltype=CL:0000055!3.42e-07!50;CL:0002319!5.47e-07!43;CL:0000221!6.84e-07!44;CL:0000133!6.84e-07!44;CL:0002321!7.53e-07!70;CL:0000220!7.53e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.55e-07,43;CL:0002321,3.42e-07,70;CL:0002453,5.31e-07,8;CL:0000221,6.14e-07,44;CL:0000133,6.14e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.89e-14!73;UBERON:0005743!5.89e-14!73;UBERON:0004111!3.42e-13!122;UBERON:0000073!9.40e-13!75;UBERON:0001016!9.40e-13!75;UBERON:0001049!4.92e-12!52;UBERON:0005068!4.92e-12!52;UBERON:0006241!4.92e-12!52;UBERON:0007135!4.92e-12!52;UBERON:0000033!5.41e-12!63;UBERON:0002020!6.55e-12!34;UBERON:0000955!1.16e-11!50;UBERON:0006238!1.16e-11!50;UBERON:0002616!1.94e-11!49;UBERON:0000025!2.36e-11!114;UBERON:0000956!2.38e-11!21;UBERON:0001869!2.38e-11!21;UBERON:0000203!2.38e-11!21;UBERON:0004121!3.35e-11!102;UBERON:0000924!3.35e-11!102;UBERON:0006601!3.35e-11!102;UBERON:0002791!3.97e-11!29;UBERON:0003528!3.97e-11!29;UBERON:0001893!3.97e-11!29;UBERON:0002619!7.67e-09!17;UBERON:0002346!7.70e-09!71;UBERON:0003075!7.70e-09!71;UBERON:0007284!7.70e-09!71;UBERON:0002780!3.15e-08!39;UBERON:0001890!3.15e-08!39;UBERON:0006240!3.15e-08!39;UBERON:0003080!3.44e-08!40;UBERON:0003056!1.19e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.03e-13,73;UBERON:0004111,1.29e-13,122;UBERON:0000956,1.52e-13,21;UBERON:0001869,1.52e-13,21;UBERON:0000203,1.52e-13,21;UBERON:0002020,4.81e-13,34;UBERON:0004121,7.05e-13,95;UBERON:0000924,7.05e-13,95;UBERON:0006601,7.05e-13,95;UBERON:0001016,7.53e-13,75;UBERON:0000073,1.21e-12,54;UBERON:0001049,3.57e-12,52;UBERON:0005068,3.57e-12,52;UBERON:0006241,3.57e-12,52;UBERON:0007135,3.57e-12,52;UBERON:0003528,5.54e-12,29;UBERON:0002791,5.54e-12,29;UBERON:0001893,5.54e-12,29;UBERON:0000025,7.30e-12,114;UBERON:0002346,3.28e-11,64;UBERON:0003075,3.28e-11,64;UBERON:0007284,3.28e-11,64;UBERON:0010371,4.64e-11,73;UBERON:0000955,1.20e-10,47;UBERON:0006238,1.20e-10,47;UBERON:0002616,2.25e-10,46;UBERON:0002619,2.39e-10,17;UBERON:0002780,5.04e-08,39;UBERON:0001890,5.04e-08,39;UBERON:0006240,5.04e-08,39;UBERON:0003080,1.38e-07,40;UBERON:0010314,5.36e-07,92;UBERON:0003056,5.97e-07,49 | |||
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| |||
|short_description=p6@Nfix | |||
}} |
Revision as of 16:18, 14 September 2013
Short description: | p6@Nfix |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Nfix_5end |
Coexpression cluster: | NA |
Association with transcript: | 56bp_to_NM_001081982, NM_010906, uc009mne.1, uc009mnf.1_5end |
EntrezGene: | Nfix |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.55e-07 | 43 |
embryonic cell | 3.42e-07 | 70 |
oligodendrocyte precursor cell | 5.31e-07 | 8 |
ectodermal cell | 6.14e-07 | 44 |
neurectodermal cell | 6.14e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.03e-13 | 73 |
anatomical conduit | 1.29e-13 | 122 |
cerebral cortex | 1.52e-13 | 21 |
cerebral hemisphere | 1.52e-13 | 21 |
pallium | 1.52e-13 | 21 |
gray matter | 4.81e-13 | 34 |
ectoderm-derived structure | 7.05e-13 | 95 |
ectoderm | 7.05e-13 | 95 |
presumptive ectoderm | 7.05e-13 | 95 |
nervous system | 7.53e-13 | 75 |
regional part of nervous system | 1.21e-12 | 54 |
neural tube | 3.57e-12 | 52 |
neural rod | 3.57e-12 | 52 |
future spinal cord | 3.57e-12 | 52 |
neural keel | 3.57e-12 | 52 |
brain grey matter | 5.54e-12 | 29 |
regional part of telencephalon | 5.54e-12 | 29 |
telencephalon | 5.54e-12 | 29 |
tube | 7.30e-12 | 114 |
neurectoderm | 3.28e-11 | 64 |
neural plate | 3.28e-11 | 64 |
presumptive neural plate | 3.28e-11 | 64 |
ecto-epithelium | 4.64e-11 | 73 |
brain | 1.20e-10 | 47 |
future brain | 1.20e-10 | 47 |
regional part of brain | 2.25e-10 | 46 |
regional part of cerebral cortex | 2.39e-10 | 17 |
regional part of forebrain | 5.04e-08 | 39 |
forebrain | 5.04e-08 | 39 |
future forebrain | 5.04e-08 | 39 |
anterior neural tube | 1.38e-07 | 40 |
structure with developmental contribution from neural crest | 5.36e-07 | 92 |
pre-chordal neural plate | 5.97e-07 | 49 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.