FFCP PHASE1:Mm9::chr9:35365982..35366036,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=30959|HGNC=|MCL_coexpression_id=0|UniProt=Q9QY15|association_with_transcript=18bp_to_ENSMUST00000034612,NM_013932,uc012gqi.1_5end|description=CAGE_peak_1_at_Ddx25_5end|id=chr9:35365982..35366036,-|ontology_enrichment_celltype=CL:0000540!3.27e-15!33;CL:0000047!3.27e-15!33;CL:0000031!3.27e-15!33;CL:0000404!3.27e-15!33;CL:0000221!6.83e-13!44;CL:0000133!6.83e-13!44;CL:0002319!7.84e-13!43;CL:0000117!2.15e-12!23;CL:0000337!2.15e-12!23;CL:0000393!4.01e-10!39;CL:0000211!4.01e-10!39;CL:0000055!2.05e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.15e-17,33;CL:0000047,1.15e-17,33;CL:0000031,1.15e-17,33;CL:0000404,1.15e-17,33;CL:0000117,2.44e-14,23;CL:0000337,2.44e-14,23;CL:0000393,8.09e-13,39;CL:0000211,8.09e-13,39;CL:0000221,8.08e-12,44;CL:0000133,8.08e-12,44;CL:0002319,9.97e-12,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.99e-31!73;UBERON:0005743!1.99e-31!73;UBERON:0000073!9.54e-31!75;UBERON:0001016!9.54e-31!75;UBERON:0002346!6.46e-29!71;UBERON:0003075!6.46e-29!71;UBERON:0007284!6.46e-29!71;UBERON:0004121!9.37e-28!102;UBERON:0000924!9.37e-28!102;UBERON:0006601!9.37e-28!102;UBERON:0001049!1.62e-24!52;UBERON:0005068!1.62e-24!52;UBERON:0006241!1.62e-24!52;UBERON:0007135!1.62e-24!52;UBERON:0000033!1.77e-24!63;UBERON:0000955!3.27e-23!50;UBERON:0006238!3.27e-23!50;UBERON:0002616!1.07e-22!49;UBERON:0003056!2.16e-21!49;UBERON:0003080!1.42e-18!40;UBERON:0002780!6.46e-18!39;UBERON:0001890!6.46e-18!39;UBERON:0006240!6.46e-18!39;UBERON:0002020!2.30e-17!34;UBERON:0002791!4.78e-14!29;UBERON:0003528!4.78e-14!29;UBERON:0001893!4.78e-14!29;UBERON:0007811!9.90e-11!86;UBERON:0000153!2.99e-10!94;UBERON:0000956!1.46e-09!21;UBERON:0001869!1.46e-09!21;UBERON:0000203!1.46e-09!21;UBERON:0002619!8.35e-09!17;UBERON:0002021!9.01e-08!10;UBERON:0000411!9.01e-08!10;UBERON:0001950!9.01e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.38e-33,73;UBERON:0001016,6.85e-32,75;UBERON:0002346,1.13e-31,64;UBERON:0003075,1.13e-31,64;UBERON:0007284,1.13e-31,64;UBERON:0004121,6.95e-29,95;UBERON:0000924,6.95e-29,95;UBERON:0006601,6.95e-29,95;UBERON:0000073,1.85e-28,54;UBERON:0001049,2.06e-26,52;UBERON:0005068,2.06e-26,52;UBERON:0006241,2.06e-26,52;UBERON:0007135,2.06e-26,52;UBERON:0010371,2.99e-26,73;UBERON:0003056,3.26e-24,49;UBERON:0000955,2.66e-22,47;UBERON:0006238,2.66e-22,47;UBERON:0002616,1.02e-21,46;UBERON:0003080,7.06e-21,40;UBERON:0010314,2.58e-20,92;UBERON:0002780,4.16e-20,39;UBERON:0001890,4.16e-20,39;UBERON:0006240,4.16e-20,39;UBERON:0002020,2.01e-19,34;UBERON:0003528,1.53e-15,29;UBERON:0002791,1.53e-15,29;UBERON:0001893,1.53e-15,29;UBERON:0000956,2.64e-10,21;UBERON:0001869,2.64e-10,21;UBERON:0000203,2.64e-10,21;UBERON:0002619,2.24e-09,17;UBERON:0002021,6.86e-09,10;UBERON:0000411,6.86e-09,10;UBERON:0001950,6.86e-09,10|phase1_expression=2.88267924788629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,137.600043464431,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.65407546914134,1.31811709640683,0.777719596297134,0.55994568650145,0,0,0,0,0,0,0,13.3528864167335,18.5146842745212,16.4796164911607,0.677689064138264,0.889294796111139,0,0,0,0.599200221036809,2.68952813725088,3.11068836925433,2.8351247049655,2.73422449756797,24.5659846587271,21.8659855542097,4.40966877173835,3.25874601462004,3.67687514644008,39.6417171597799,32.1772091974673,30.7213066512487,18.2003077067668,26.1654660702892,23.962015045611,19.2636269310953,21.9477417912355,23.2253336620751,33.8822873294718,28.4743361598206,26.0959224155421,0.151452386666368,0.68014404096107,0,0,0,0,0,0,16.0106638950197,0,0,0,2.11265129665021,0,0,0,0,0.253359865475099,0,17.5843174767352,0,1.33597925158342,3.29622120855658,2.74018930480927,1.15307748628029,1.65794904607885,1.05829836422134,0.502666365318702,0,0,0,0.161766849947409,0,0,0,21.3729981818429,16.3368431314495,0,0,0,0,25.0150367806054,20.1300265240196,6.65968066198181,15.6441888173049,18.9229438424445,33.8694512632083,21.2536054618763,0.916554274652847,0.497627882440372,0.758168275301024,2.10441855886474,5.33493816147085,3.44853156650209,5.04173963454978,3.31550599238573,4.150226448231,5.89323113310309,4.31027932974753,5.69147415625834,2.58681591519411,1.70195472151037,1.58356011747554,2.6303487891309,0.556094498451196,0.348252166522167,0,2.18937693500343,0,0,0,1.03562886267751,1.40715635988658,0.720248245844059,0.710234206755631,0.393528463494808,0.617068451549513,0,0.268273401399619,0.116765342367169,0.493679549740441,0,0,0,0,0,18.2952255250791,10.0846520131699,0,0,1.49301775374664,1.16118335930219,0.77320476793256,1.00841762311671,0.22237804384487,0.760902504450237,0,0.658795818896044,0.502670417600539,0.198956472041151,0,0,0.216138049874694,0.199141273254367,2.0863469104839,2.05647322697512,2.25415471346161,0.203651327845314,0.387904974335251,0.280543279561274,0.379419222745544,0,0.156998727841375,0,0,0.166845105716094,0,0,0,0.241177159752417,0,0.287696137450811,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0,3.03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| ||
|EntrezGene=30959 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q9QY15 | |||
|association_with_transcript=18bp_to_ENSMUST00000034612,NM_013932,uc012gqi.1_5end | |||
|description=CAGE_peak_1_at_Ddx25_5end | |||
|id=chr9:35365982..35366036,- | |||
|ontology_enrichment_celltype=CL:0000540!3.27e-15!33;CL:0000047!3.27e-15!33;CL:0000031!3.27e-15!33;CL:0000404!3.27e-15!33;CL:0000221!6.83e-13!44;CL:0000133!6.83e-13!44;CL:0002319!7.84e-13!43;CL:0000117!2.15e-12!23;CL:0000337!2.15e-12!23;CL:0000393!4.01e-10!39;CL:0000211!4.01e-10!39;CL:0000055!2.05e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.15e-17,33;CL:0000047,1.15e-17,33;CL:0000031,1.15e-17,33;CL:0000404,1.15e-17,33;CL:0000117,2.44e-14,23;CL:0000337,2.44e-14,23;CL:0000393,8.09e-13,39;CL:0000211,8.09e-13,39;CL:0000221,8.08e-12,44;CL:0000133,8.08e-12,44;CL:0002319,9.97e-12,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.99e-31!73;UBERON:0005743!1.99e-31!73;UBERON:0000073!9.54e-31!75;UBERON:0001016!9.54e-31!75;UBERON:0002346!6.46e-29!71;UBERON:0003075!6.46e-29!71;UBERON:0007284!6.46e-29!71;UBERON:0004121!9.37e-28!102;UBERON:0000924!9.37e-28!102;UBERON:0006601!9.37e-28!102;UBERON:0001049!1.62e-24!52;UBERON:0005068!1.62e-24!52;UBERON:0006241!1.62e-24!52;UBERON:0007135!1.62e-24!52;UBERON:0000033!1.77e-24!63;UBERON:0000955!3.27e-23!50;UBERON:0006238!3.27e-23!50;UBERON:0002616!1.07e-22!49;UBERON:0003056!2.16e-21!49;UBERON:0003080!1.42e-18!40;UBERON:0002780!6.46e-18!39;UBERON:0001890!6.46e-18!39;UBERON:0006240!6.46e-18!39;UBERON:0002020!2.30e-17!34;UBERON:0002791!4.78e-14!29;UBERON:0003528!4.78e-14!29;UBERON:0001893!4.78e-14!29;UBERON:0007811!9.90e-11!86;UBERON:0000153!2.99e-10!94;UBERON:0000956!1.46e-09!21;UBERON:0001869!1.46e-09!21;UBERON:0000203!1.46e-09!21;UBERON:0002619!8.35e-09!17;UBERON:0002021!9.01e-08!10;UBERON:0000411!9.01e-08!10;UBERON:0001950!9.01e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.38e-33,73;UBERON:0001016,6.85e-32,75;UBERON:0002346,1.13e-31,64;UBERON:0003075,1.13e-31,64;UBERON:0007284,1.13e-31,64;UBERON:0004121,6.95e-29,95;UBERON:0000924,6.95e-29,95;UBERON:0006601,6.95e-29,95;UBERON:0000073,1.85e-28,54;UBERON:0001049,2.06e-26,52;UBERON:0005068,2.06e-26,52;UBERON:0006241,2.06e-26,52;UBERON:0007135,2.06e-26,52;UBERON:0010371,2.99e-26,73;UBERON:0003056,3.26e-24,49;UBERON:0000955,2.66e-22,47;UBERON:0006238,2.66e-22,47;UBERON:0002616,1.02e-21,46;UBERON:0003080,7.06e-21,40;UBERON:0010314,2.58e-20,92;UBERON:0002780,4.16e-20,39;UBERON:0001890,4.16e-20,39;UBERON:0006240,4.16e-20,39;UBERON:0002020,2.01e-19,34;UBERON:0003528,1.53e-15,29;UBERON:0002791,1.53e-15,29;UBERON:0001893,1.53e-15,29;UBERON:0000956,2.64e-10,21;UBERON:0001869,2.64e-10,21;UBERON:0000203,2.64e-10,21;UBERON:0002619,2.24e-09,17;UBERON:0002021,6.86e-09,10;UBERON:0000411,6.86e-09,10;UBERON:0001950,6.86e-09,10 | |||
|phase1_expression=2.88267924788629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,137.600043464431,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.65407546914134,1.31811709640683,0.777719596297134,0.55994568650145,0,0,0,0,0,0,0,13.3528864167335,18.5146842745212,16.4796164911607,0.677689064138264,0.889294796111139,0,0,0,0.599200221036809,2.68952813725088,3.11068836925433,2.8351247049655,2.73422449756797,24.5659846587271,21.8659855542097,4.40966877173835,3.25874601462004,3.67687514644008,39.6417171597799,32.1772091974673,30.7213066512487,18.2003077067668,26.1654660702892,23.962015045611,19.2636269310953,21.9477417912355,23.2253336620751,33.8822873294718,28.4743361598206,26.0959224155421,0.151452386666368,0.68014404096107,0,0,0,0,0,0,16.0106638950197,0,0,0,2.11265129665021,0,0,0,0,0.253359865475099,0,17.5843174767352,0,1.33597925158342,3.29622120855658,2.74018930480927,1.15307748628029,1.65794904607885,1.05829836422134,0.502666365318702,0,0,0,0.161766849947409,0,0,0,21.3729981818429,16.3368431314495,0,0,0,0,25.0150367806054,20.1300265240196,6.65968066198181,15.6441888173049,18.9229438424445,33.8694512632083,21.2536054618763,0.916554274652847,0.497627882440372,0.758168275301024,2.10441855886474,5.33493816147085,3.44853156650209,5.04173963454978,3.31550599238573,4.150226448231,5.89323113310309,4.31027932974753,5.69147415625834,2.58681591519411,1.70195472151037,1.58356011747554,2.6303487891309,0.556094498451196,0.348252166522167,0,2.18937693500343,0,0,0,1.03562886267751,1.40715635988658,0.720248245844059,0.710234206755631,0.393528463494808,0.617068451549513,0,0.268273401399619,0.116765342367169,0.493679549740441,0,0,0,0,0,18.2952255250791,10.0846520131699,0,0,1.49301775374664,1.16118335930219,0.77320476793256,1.00841762311671,0.22237804384487,0.760902504450237,0,0.658795818896044,0.502670417600539,0.198956472041151,0,0,0.216138049874694,0.199141273254367,2.0863469104839,2.05647322697512,2.25415471346161,0.203651327845314,0.387904974335251,0.280543279561274,0.379419222745544,0,0.156998727841375,0,0,0.166845105716094,0,0,0,0.241177159752417,0,0.287696137450811,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0,3.03186258832776,1.14075483509418,0.678980343100753,0.469380496577004,0.335012514883631,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,19.9082731584862,16.8784828692773,0,0,5.36363973007636,6.63745865304285,4.95473814785438,2.62865677747807,2.22798674082394,4.81230102341015,5.66734982344852,6.72188473196017,5.53402889125133,11.2462460747632,0,2.49291845134157,2.11753047159649,0.164970122972535,0,0.485561272309963,0.302323556964751,0.377210159511796,0.590603785761546,0,0.258428293168221,0.363533729477506,0,0,0,0,8.17055053809091,3.42116078659489,2.58717367565509,4.07240366560025,6.56158864476412,5.35106452806212,4.60737257685939,5.17590413494819,0,0,0.441056796109924,0.16488625294148,0.161464426695906,0.180938774784468,0,0,0,15.7611506708933,0,0.619160603889667,0.185194527369712,0,0,0,0,0,0,0,3.63786392618306,0.813277868507395,0.756037385752609,0.627264888043406,0.655087691238533,0.674321731924103,0.247960367176008,0.26175594198403,0,0,931.784427644967,2.0932316446157,3.30916980914195,17.6950581393083,13.949260935595,8.44780627453891,4.22486059124714,4.81756223922615,11.3248091979768,288.209856145425,484.754500531988,0,0.608175645870493,0.308132871494482,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0,2.88581739386284,1.70456327558004,2.18250001273302,0.19318959403219,0,0.183151624267265,0.214368379079066,0,29.9318476587045,32.6830917920096,30.9363577257274,22.8564732517105,25.3480532315138,25.6833925112498,20.925697507186,29.2708782095743,26.2822597210839,20.192652158321,3.63255716544618,7.98049746802062,2.90247129782028,1.94485373654635,5.24032906569956,3.67687016900028,3.11145418922261,2.67845574410562,3.85103051510178,3.28506375292937,2.78827229879264,3.2066478035633,3.55837728385553,2.81710670581425,2.5845961030026,1.42888107384922,3.36064545240081,3.08654752741928,2.88460130562315,3.82717192349433,3.42869252385415,1.4198064492747,3.81497903915713,2.0348498328526,3.57615645578256,2.876896668317,3.65855945745545,2.63069711437843,3.80251518768413,2.24456908663095,3.79632057997357,3.74317033027141,0.818462086339379,4.02835787083512,2.3148793317737,5.9954538705107,3.97683734357194,2.57845264857958,1.72159498861959,0.441182838239031,1.62307484934295 | |||
|short_description=p1@Ddx25 | |||
}} |
Revision as of 17:41, 14 September 2013
Short description: | p1@Ddx25 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ddx25_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 18bp_to_ENSMUST00000034612, NM_013932, uc012gqi.1_5end |
EntrezGene: | Ddx25 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.15e-17 | 33 |
neuronal stem cell | 1.15e-17 | 33 |
neuroblast | 1.15e-17 | 33 |
electrically signaling cell | 1.15e-17 | 33 |
CNS neuron (sensu Vertebrata) | 2.44e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.44e-14 | 23 |
electrically responsive cell | 8.09e-13 | 39 |
electrically active cell | 8.09e-13 | 39 |
ectodermal cell | 8.08e-12 | 44 |
neurectodermal cell | 8.08e-12 | 44 |
neural cell | 9.97e-12 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.38e-33 | 73 |
nervous system | 6.85e-32 | 75 |
neurectoderm | 1.13e-31 | 64 |
neural plate | 1.13e-31 | 64 |
presumptive neural plate | 1.13e-31 | 64 |
ectoderm-derived structure | 6.95e-29 | 95 |
ectoderm | 6.95e-29 | 95 |
presumptive ectoderm | 6.95e-29 | 95 |
regional part of nervous system | 1.85e-28 | 54 |
neural tube | 2.06e-26 | 52 |
neural rod | 2.06e-26 | 52 |
future spinal cord | 2.06e-26 | 52 |
neural keel | 2.06e-26 | 52 |
ecto-epithelium | 2.99e-26 | 73 |
pre-chordal neural plate | 3.26e-24 | 49 |
brain | 2.66e-22 | 47 |
future brain | 2.66e-22 | 47 |
regional part of brain | 1.02e-21 | 46 |
anterior neural tube | 7.06e-21 | 40 |
structure with developmental contribution from neural crest | 2.58e-20 | 92 |
regional part of forebrain | 4.16e-20 | 39 |
forebrain | 4.16e-20 | 39 |
future forebrain | 4.16e-20 | 39 |
gray matter | 2.01e-19 | 34 |
brain grey matter | 1.53e-15 | 29 |
regional part of telencephalon | 1.53e-15 | 29 |
telencephalon | 1.53e-15 | 29 |
cerebral cortex | 2.64e-10 | 21 |
cerebral hemisphere | 2.64e-10 | 21 |
pallium | 2.64e-10 | 21 |
regional part of cerebral cortex | 2.24e-09 | 17 |
occipital lobe | 6.86e-09 | 10 |
visual cortex | 6.86e-09 | 10 |
neocortex | 6.86e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.