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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007960
|DRA_sample_Accession=CAGE@DRS007960
|accession_numbers=CAGE;DRX008067;DRR008939;DRZ000364;DRZ001749
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_a=EFO:0002091;;FF:0000030;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs12201
|library_ids=CNhs12201
|library_ids=CNhs12201
|name=CD8+ T Cells (pluriselect), donor090325, donation1
|name=CD8+ T Cells (pluriselect), donor090325, donation1
Line 87: Line 89:
|top_motifs=ELF1,2,4:2.63529550636;RUNX1..3:2.27513047476;RORA:2.16212482132;ETS1,2:2.08956907869;T:2.05670579376;STAT1,3:1.86036088088;PDX1:1.83377990879;PAX3,7:1.76322894271;FOX{D1,D2}:1.74682510301;FOXO1,3,4:1.66813753446;DMAP1_NCOR{1,2}_SMARC:1.60153762551;SPI1:1.6008162909;CDX1,2,4:1.54771721068;TLX2:1.53980488977;ELK1,4_GABP{A,B1}:1.51100642458;IRF1,2:1.46313295388;HMX1:1.45666181011;BPTF:1.39209646949;SPIB:1.38382815034;FOX{F1,F2,J1}:1.36934351805;RFX2..5_RFXANK_RFXAP:1.29543124996;PAX6:1.08430815518;IRF7:1.0801313043;TGIF1:1.07173387606;CRX:0.991712883879;CREB1:0.924197548773;LEF1_TCF7_TCF7L1,2:0.83228906606;PBX1:0.789536913823;GATA6:0.786009484431;BREu{core}:0.746876822367;NANOG{mouse}:0.732716775411;FOXN1:0.677971375442;SPZ1:0.67792724817;ATF5_CREB3:0.670538206249;NFATC1..3:0.637100309271;NFIL3:0.633022845021;NRF1:0.602247714077;VSX1,2:0.562876611705;FOX{I1,J2}:0.541571016619;YY1:0.527860203283;PAX2:0.523448310576;FOXA2:0.51477439133;NFKB1_REL_RELA:0.508518529314;SREBF1,2:0.491655581206;ALX1:0.46466016954;EP300:0.45484104658;NKX2-2,8:0.42881501876;IKZF2:0.414415719008;MYOD1:0.4082334221;ZEB1:0.368783719768;FOXQ1:0.349238089121;HBP1_HMGB_SSRP1_UBTF:0.318438357024;RBPJ:0.294211111162;SNAI1..3:0.271613425779;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.266682264077;ZNF143:0.252311823022;SOX5:0.246768182212;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.239153167918;AHR_ARNT_ARNT2:0.226432488727;RFX1:0.220667606072;TAL1_TCF{3,4,12}:0.199764426716;ATF4:0.198188325131;RXRA_VDR{dimer}:0.19225483829;FOXP3:0.17995449719;HES1:0.177721542048;ATF2:0.139666932173;AR:0.135583364128;NFIX:0.134037273889;ZNF148:0.133441452242;STAT5{A,B}:0.112326312269;GCM1,2:0.10134960345;MAFB:0.0963467045397;MYB:0.0923398963344;NANOG:0.0693093641197;NKX6-1,2:0.0633585515165;JUN:0.0227073872909;CEBPA,B_DDIT3:0.0159729792777;HOX{A6,A7,B6,B7}:0.00482933245469;OCT4_SOX2{dimer}:0.00286933047197;CUX2:-0.0151826210731;HLF:-0.0466548606633;NKX2-1,4:-0.053285417658;NR5A1,2:-0.0632702369695;LMO2:-0.0654533459332;TBX4,5:-0.0706057617195;SOX2:-0.0893052255413;HMGA1,2:-0.0903948597744;PAX4:-0.0942608376583;ADNP_IRX_SIX_ZHX:-0.119273783354;NFE2L1:-0.123003121258;NR1H4:-0.139102928694;STAT2,4,6:-0.180886311394;NFY{A,B,C}:-0.195748330936;FOSL2:-0.212864062499;ZBTB16:-0.236206517927;PRRX1,2:-0.257477362892;POU1F1:-0.262012721649;HNF1A:-0.269979894115;E2F1..5:-0.295051672363;HNF4A_NR2F1,2:-0.299783022748;GLI1..3:-0.300182802825;NR3C1:-0.308685360497;PAX8:-0.311207959065;MYFfamily:-0.369929461458;NHLH1,2:-0.371782678969;TFAP4:-0.374977405248;POU2F1..3:-0.379613089305;DBP:-0.385030158848;FOXD3:-0.392148578142;HIF1A:-0.394735656063;ATF6:-0.405160024185;BACH2:-0.416312134773;FOS_FOS{B,L1}_JUN{B,D}:-0.437709838252;NFE2L2:-0.44889925794;PAX5:-0.468477428978;ZNF238:-0.477860618519;POU5F1:-0.486325762018;MZF1:-0.489986907624;MTF1:-0.506577334674;RREB1:-0.517822670125;ALX4:-0.530576218502;FOXP1:-0.531870493096;ESR1:-0.56073825654;ZNF423:-0.567615424532;NFE2:-0.584059991793;GFI1:-0.591726531225;HOXA9_MEIS1:-0.612144794398;MEF2{A,B,C,D}:-0.622956768076;ZFP161:-0.629632863939;REST:-0.641092090413;ARID5B:-0.662823353337;SRF:-0.667744666919;FOXM1:-0.691334720572;GATA4:-0.692206570635;ZBTB6:-0.69885940465;EGR1..3:-0.716087141453;HAND1,2:-0.719862577369;SMAD1..7,9:-0.730803281543;NKX3-1:-0.751457132262;MAZ:-0.753639277245;PATZ1:-0.755024218651;MTE{core}:-0.777340460075;SOX{8,9,10}:-0.786863484408;ZNF384:-0.79998973618;MED-1{core}:-0.802841205945;TFCP2:-0.806514856085;NKX3-2:-0.829405037601;HSF1,2:-0.863661448988;NKX2-3_NKX2-5:-0.869325880767;PPARG:-0.90771905706;EVI1:-0.910005470578;PRDM1:-0.913027915096;XCPE1{core}:-0.928805371207;TP53:-0.983546057945;KLF4:-1.01672323161;bHLH_family:-1.03037844829;AIRE:-1.03464812498;XBP1:-1.03473527418;LHX3,4:-1.0420388113;GTF2I:-1.07329439427;HOX{A5,B5}:-1.10066702654;GFI1B:-1.1426007593;EN1,2:-1.14585012121;SP1:-1.14685322625;CDC5L:-1.17144367386;MYBL2:-1.17899598808;EBF1:-1.20419000052;RXR{A,B,G}:-1.21251516673;SOX17:-1.26178282636;TFAP2B:-1.26666163714;TLX1..3_NFIC{dimer}:-1.33168303089;GZF1:-1.35896145763;PITX1..3:-1.36990753447;TFDP1:-1.38064509112;HOX{A4,D4}:-1.38943899221;UFEwm:-1.41144321932;ZIC1..3:-1.43757538583;ONECUT1,2:-1.45050461798;HIC1:-1.50252373481;NR6A1:-1.50826273857;ESRRA:-1.53072204083;TBP:-1.55261757168;TFAP2{A,C}:-1.62486464176;GTF2A1,2:-1.62531923099;POU6F1:-1.65674572561;TEAD1:-1.67390743111;TOPORS:-1.83873507674;TEF:-1.86852564003;PAX1,9:-1.89242382072;FOXL1:-2.06738457861;POU3F1..4:-2.07960492938;IKZF1:-2.38537268292
|top_motifs=ELF1,2,4:2.63529550636;RUNX1..3:2.27513047476;RORA:2.16212482132;ETS1,2:2.08956907869;T:2.05670579376;STAT1,3:1.86036088088;PDX1:1.83377990879;PAX3,7:1.76322894271;FOX{D1,D2}:1.74682510301;FOXO1,3,4:1.66813753446;DMAP1_NCOR{1,2}_SMARC:1.60153762551;SPI1:1.6008162909;CDX1,2,4:1.54771721068;TLX2:1.53980488977;ELK1,4_GABP{A,B1}:1.51100642458;IRF1,2:1.46313295388;HMX1:1.45666181011;BPTF:1.39209646949;SPIB:1.38382815034;FOX{F1,F2,J1}:1.36934351805;RFX2..5_RFXANK_RFXAP:1.29543124996;PAX6:1.08430815518;IRF7:1.0801313043;TGIF1:1.07173387606;CRX:0.991712883879;CREB1:0.924197548773;LEF1_TCF7_TCF7L1,2:0.83228906606;PBX1:0.789536913823;GATA6:0.786009484431;BREu{core}:0.746876822367;NANOG{mouse}:0.732716775411;FOXN1:0.677971375442;SPZ1:0.67792724817;ATF5_CREB3:0.670538206249;NFATC1..3:0.637100309271;NFIL3:0.633022845021;NRF1:0.602247714077;VSX1,2:0.562876611705;FOX{I1,J2}:0.541571016619;YY1:0.527860203283;PAX2:0.523448310576;FOXA2:0.51477439133;NFKB1_REL_RELA:0.508518529314;SREBF1,2:0.491655581206;ALX1:0.46466016954;EP300:0.45484104658;NKX2-2,8:0.42881501876;IKZF2:0.414415719008;MYOD1:0.4082334221;ZEB1:0.368783719768;FOXQ1:0.349238089121;HBP1_HMGB_SSRP1_UBTF:0.318438357024;RBPJ:0.294211111162;SNAI1..3:0.271613425779;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.266682264077;ZNF143:0.252311823022;SOX5:0.246768182212;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.239153167918;AHR_ARNT_ARNT2:0.226432488727;RFX1:0.220667606072;TAL1_TCF{3,4,12}:0.199764426716;ATF4:0.198188325131;RXRA_VDR{dimer}:0.19225483829;FOXP3:0.17995449719;HES1:0.177721542048;ATF2:0.139666932173;AR:0.135583364128;NFIX:0.134037273889;ZNF148:0.133441452242;STAT5{A,B}:0.112326312269;GCM1,2:0.10134960345;MAFB:0.0963467045397;MYB:0.0923398963344;NANOG:0.0693093641197;NKX6-1,2:0.0633585515165;JUN:0.0227073872909;CEBPA,B_DDIT3:0.0159729792777;HOX{A6,A7,B6,B7}:0.00482933245469;OCT4_SOX2{dimer}:0.00286933047197;CUX2:-0.0151826210731;HLF:-0.0466548606633;NKX2-1,4:-0.053285417658;NR5A1,2:-0.0632702369695;LMO2:-0.0654533459332;TBX4,5:-0.0706057617195;SOX2:-0.0893052255413;HMGA1,2:-0.0903948597744;PAX4:-0.0942608376583;ADNP_IRX_SIX_ZHX:-0.119273783354;NFE2L1:-0.123003121258;NR1H4:-0.139102928694;STAT2,4,6:-0.180886311394;NFY{A,B,C}:-0.195748330936;FOSL2:-0.212864062499;ZBTB16:-0.236206517927;PRRX1,2:-0.257477362892;POU1F1:-0.262012721649;HNF1A:-0.269979894115;E2F1..5:-0.295051672363;HNF4A_NR2F1,2:-0.299783022748;GLI1..3:-0.300182802825;NR3C1:-0.308685360497;PAX8:-0.311207959065;MYFfamily:-0.369929461458;NHLH1,2:-0.371782678969;TFAP4:-0.374977405248;POU2F1..3:-0.379613089305;DBP:-0.385030158848;FOXD3:-0.392148578142;HIF1A:-0.394735656063;ATF6:-0.405160024185;BACH2:-0.416312134773;FOS_FOS{B,L1}_JUN{B,D}:-0.437709838252;NFE2L2:-0.44889925794;PAX5:-0.468477428978;ZNF238:-0.477860618519;POU5F1:-0.486325762018;MZF1:-0.489986907624;MTF1:-0.506577334674;RREB1:-0.517822670125;ALX4:-0.530576218502;FOXP1:-0.531870493096;ESR1:-0.56073825654;ZNF423:-0.567615424532;NFE2:-0.584059991793;GFI1:-0.591726531225;HOXA9_MEIS1:-0.612144794398;MEF2{A,B,C,D}:-0.622956768076;ZFP161:-0.629632863939;REST:-0.641092090413;ARID5B:-0.662823353337;SRF:-0.667744666919;FOXM1:-0.691334720572;GATA4:-0.692206570635;ZBTB6:-0.69885940465;EGR1..3:-0.716087141453;HAND1,2:-0.719862577369;SMAD1..7,9:-0.730803281543;NKX3-1:-0.751457132262;MAZ:-0.753639277245;PATZ1:-0.755024218651;MTE{core}:-0.777340460075;SOX{8,9,10}:-0.786863484408;ZNF384:-0.79998973618;MED-1{core}:-0.802841205945;TFCP2:-0.806514856085;NKX3-2:-0.829405037601;HSF1,2:-0.863661448988;NKX2-3_NKX2-5:-0.869325880767;PPARG:-0.90771905706;EVI1:-0.910005470578;PRDM1:-0.913027915096;XCPE1{core}:-0.928805371207;TP53:-0.983546057945;KLF4:-1.01672323161;bHLH_family:-1.03037844829;AIRE:-1.03464812498;XBP1:-1.03473527418;LHX3,4:-1.0420388113;GTF2I:-1.07329439427;HOX{A5,B5}:-1.10066702654;GFI1B:-1.1426007593;EN1,2:-1.14585012121;SP1:-1.14685322625;CDC5L:-1.17144367386;MYBL2:-1.17899598808;EBF1:-1.20419000052;RXR{A,B,G}:-1.21251516673;SOX17:-1.26178282636;TFAP2B:-1.26666163714;TLX1..3_NFIC{dimer}:-1.33168303089;GZF1:-1.35896145763;PITX1..3:-1.36990753447;TFDP1:-1.38064509112;HOX{A4,D4}:-1.38943899221;UFEwm:-1.41144321932;ZIC1..3:-1.43757538583;ONECUT1,2:-1.45050461798;HIC1:-1.50252373481;NR6A1:-1.50826273857;ESRRA:-1.53072204083;TBP:-1.55261757168;TFAP2{A,C}:-1.62486464176;GTF2A1,2:-1.62531923099;POU6F1:-1.65674572561;TEAD1:-1.67390743111;TOPORS:-1.83873507674;TEF:-1.86852564003;PAX1,9:-1.89242382072;FOXL1:-2.06738457861;POU3F1..4:-2.07960492938;IKZF1:-2.38537268292
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007960
|accession_numbers=DRX008067;DRR008939;DRZ000364;DRZ001749;CAGE
|library_id=CNhs12201
}}
}}

Revision as of 15:55, 17 October 2013


Name:CD8+ T Cells (pluriselect), donor090325, donation1
Species:Human (Homo sapiens)
Library ID:CNhs12201
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
ageNA
cell typeT cell, CD8+
cell lineNA
companyNA
collaborationMatched_genome_OSC(contact:Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007960
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12201 CAGE DRX008067 DRR008939
Accession ID Hg19

Library idBAMCTSS
CNhs12201 DRZ000364 DRZ001749
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.162
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.19
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.223
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.114
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.0609
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.403
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.39
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.776
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.697
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.114
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.0469
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.348
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.0609
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.114
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.162
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.399
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.219
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.462
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.212
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.114
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.372
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.119
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.569
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.255
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.56
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.241
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.0609
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.244
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.205
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.205
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.224
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.907
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.114
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.0609
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.0609
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.73
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12201

Jaspar motifP-value
MA0002.21.22595e-9
MA0003.10.491
MA0004.10.689
MA0006.10.29
MA0007.10.676
MA0009.10.251
MA0014.10.81
MA0017.10.0358
MA0018.20.304
MA0019.10.516
MA0024.10.243
MA0025.10.346
MA0027.10.67
MA0028.12.4628e-7
MA0029.10.919
MA0030.10.0252
MA0031.10.00235
MA0035.20.155
MA0038.10.18
MA0039.20.456
MA0040.10.224
MA0041.10.229
MA0042.10.206
MA0043.10.263
MA0046.10.547
MA0047.20.0231
MA0048.10.189
MA0050.16.78281e-10
MA0051.12.88432e-5
MA0052.10.0493
MA0055.10.634
MA0057.10.604
MA0058.10.396
MA0059.10.516
MA0060.10.185
MA0061.11.28376e-4
MA0062.24.13705e-26
MA0065.20.0469
MA0066.10.369
MA0067.10.21
MA0068.10.388
MA0069.10.687
MA0070.10.358
MA0071.10.835
MA0072.10.278
MA0073.10.808
MA0074.10.718
MA0076.13.51631e-12
MA0077.10.0518
MA0078.10.706
MA0079.20.935
MA0080.21.9682e-14
MA0081.10.00164
MA0083.10.0349
MA0084.10.587
MA0087.10.516
MA0088.10.0413
MA0090.14.64849e-4
MA0091.10.99
MA0092.10.853
MA0093.10.688
MA0099.20.159
MA0100.10.348
MA0101.10.0465
MA0102.20.0659
MA0103.10.232
MA0104.20.122
MA0105.11.61252e-5
MA0106.10.181
MA0107.10.0513
MA0108.28.998e-9
MA0111.10.274
MA0112.20.504
MA0113.10.718
MA0114.10.339
MA0115.10.811
MA0116.16.97936e-5
MA0117.10.542
MA0119.10.302
MA0122.10.188
MA0124.10.607
MA0125.10.545
MA0131.10.35
MA0135.10.511
MA0136.18.19029e-28
MA0137.20.00216
MA0138.20.99
MA0139.10.00597
MA0140.10.187
MA0141.10.782
MA0142.10.641
MA0143.10.445
MA0144.10.0561
MA0145.10.702
MA0146.10.329
MA0147.10.214
MA0148.10.147
MA0149.10.36
MA0150.10.526
MA0152.10.0208
MA0153.10.574
MA0154.10.00789
MA0155.10.773
MA0156.11.68776e-31
MA0157.10.00485
MA0159.10.185
MA0160.10.413
MA0162.10.942
MA0163.14.77974e-9
MA0164.10.587
MA0258.10.674
MA0259.10.442



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12201

Novel motifP-value
10.451
100.0303
1000.704
1010.349
1020.694
1030.103
1040.541
1050.125
1060.74
1070.0366
1080.489
1090.0743
110.151
1100.592
1110.472
1120.444
1130.18
1140.336
1150.28
1160.369
1170.00334
1180.466
1190.932
120.46
1200.5
1210.874
1220.367
1230.697
1240.181
1250.828
1260.148
1270.321
1280.81
1290.221
130.614
1300.865
1310.354
1320.526
1330.981
1340.639
1350.417
1360.913
1370.0264
1380.218
1390.0745
140.327
1400.226
1410.871
1420.827
1433.76691e-4
1440.798
1450.551
1460.239
1470.0127
1480.242
1490.921
150.133
1500.996
1510.435
1520.33
1530.882
1540.816
1550.0616
1560.841
1570.31
1580.151
1590.114
160.939
1600.791
1610.19
1620.12
1630.874
1640.416
1650.589
1660.678
1670.534
1680.0274
1690.993
170.885
180.818
190.228
20.666
200.959
210.736
220.855
230.653
240.599
250.0333
260.981
270.024
280.317
290.0529
30.0715
300.608
310.788
320.065
330.332
340.788
350.0922
360.0581
370.232
380.656
390.345
40.825
400.63
410.0364
420.0726
430.34
440.645
450.896
460.317
470.0964
480.254
490.265
50.103
500.522
510.579
520.204
530.312
540.638
550.435
560.729
570.857
580.0528
590.35
60.707
600.431
610.071
620.0347
630.938
640.285
650.89
660.909
670.886
680.698
690.694
70.179
700.0388
710.147
720.061
730.615
740.36
750.0252
760.279
770.436
780.389
790.511
80.682
806.56502e-4
810.46
820.187
830.836
840.758
850.669
860.14
870.377
880.652
890.727
90.378
900.0425
910.904
920.634
930.233
940.112
950.0115
960.187
970.53
980.171
990.0176



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12201


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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