Personal tools

FF:11504-119G1: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008191
|DRA_sample_Accession=CAGE@DRS008191
|accession_numbers=CAGE;DRX008299;DRR009171;DRZ000596;DRZ001981
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0005933,UBERON:0005942,UBERON:0002416,UBERON:0005932
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0005933,UBERON:0005942,UBERON:0002416,UBERON:0005932
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0002559,CL:0002561
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0002559,CL:0002561
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000075
|is_a=EFO:0002091;;FF:0000075
|is_obsolete=
|is_obsolete=
|library_id=CNhs12339
|library_ids=CNhs12339
|library_ids=CNhs12339
|name=Hair Follicle Outer Root Sheath Cells, donor1
|name=Hair Follicle Outer Root Sheath Cells, donor1
Line 87: Line 89:
|top_motifs=NKX2-1,4:2.22719659631;FOXL1:2.14123911103;RXR{A,B,G}:2.11402142717;GZF1:2.09361936322;NKX2-2,8:1.92914844638;UFEwm:1.69426059799;ALX4:1.66988342111;AIRE:1.6165483428;EBF1:1.53190470501;ZNF238:1.5116452618;NR3C1:1.4166404261;ESR1:1.40071328492;KLF4:1.36255839082;FOXD3:1.34675728333;ATF6:1.31653373208;NKX3-1:1.29330727336;EVI1:1.27979950969;NFE2L1:1.23920507462;NFATC1..3:1.20470367151;SRF:1.17304855937;SOX5:1.06901119391;HMX1:1.06014463889;FOXO1,3,4:1.03958513299;HMGA1,2:1.02888035753;TP53:0.927398442601;PAX1,9:0.920454192344;TAL1_TCF{3,4,12}:0.918282511218;XBP1:0.91732193583;HES1:0.879036432044;RXRA_VDR{dimer}:0.876450970524;NKX3-2:0.844314835749;HIF1A:0.833877162315;NKX6-1,2:0.823478243384;TEAD1:0.815018046745;GATA4:0.814192052655;BPTF:0.797063780625;EN1,2:0.795608856019;GFI1B:0.77010012721;TFAP4:0.747066787732;ZBTB16:0.70538819121;GLI1..3:0.656150529261;TLX1..3_NFIC{dimer}:0.60720761387;MYBL2:0.568378472602;DBP:0.551713459642;ZIC1..3:0.472577425121;HOX{A5,B5}:0.457131052685;PAX5:0.441752721702;bHLH_family:0.42119739084;NANOG{mouse}:0.407219792276;TOPORS:0.391574192669;TFCP2:0.380579858408;DMAP1_NCOR{1,2}_SMARC:0.377979693673;HAND1,2:0.377970968794;HSF1,2:0.370543913131;HOX{A4,D4}:0.347712351301;NHLH1,2:0.341818920223;NFIX:0.338242871401;ZBTB6:0.330104014263;STAT2,4,6:0.324381710775;ZNF384:0.324330562916;YY1:0.320357822029;FOX{I1,J2}:0.320222428675;PRDM1:0.297640963988;IKZF1:0.295924499827;PATZ1:0.292810525184;MZF1:0.278675619254;ESRRA:0.277636270812;GTF2I:0.271555767703;IRF1,2:0.25744220469;GTF2A1,2:0.253073429224;AR:0.24594863635;NR6A1:0.224881606979;MAFB:0.221147987839;NR1H4:0.218359512599;HOX{A6,A7,B6,B7}:0.21751536105;FOX{D1,D2}:0.202104181729;FOXP3:0.186737623581;TBP:0.184729598747;AHR_ARNT_ARNT2:0.159841168406;TFAP2{A,C}:0.15921547213;ELK1,4_GABP{A,B1}:0.132410968916;HLF:0.113973619702;SOX17:0.111322053512;LHX3,4:0.0827985442566;MYFfamily:0.069280146463;NFE2L2:0.0559712453006;MTF1:0.0498601704687;ARID5B:0.0439720896153;MAZ:0.0329920369675;MEF2{A,B,C,D}:0.0326867278871;STAT1,3:0.0233153818639;LEF1_TCF7_TCF7L1,2:0.0229060618701;CEBPA,B_DDIT3:0.0171913725439;ZNF423:0.0171254294755;SPZ1:-0.0123952270008;RUNX1..3:-0.0170513698534;HNF4A_NR2F1,2:-0.0390721785903;STAT5{A,B}:-0.0443282425302;MED-1{core}:-0.053090487771;HNF1A:-0.0783896588876;RFX1:-0.0842566133374;GCM1,2:-0.0926189913482;BACH2:-0.0989303347493;IKZF2:-0.102320415967;RREB1:-0.105143189783;REST:-0.12220910802;CDX1,2,4:-0.138025000343;NFKB1_REL_RELA:-0.139434154158;PRRX1,2:-0.153702367639;NFE2:-0.161776876322;SMAD1..7,9:-0.203802392554;TGIF1:-0.212423181153;PAX8:-0.213650499704;FOS_FOS{B,L1}_JUN{B,D}:-0.229261767655;ATF5_CREB3:-0.233015956734;HIC1:-0.234510911276;ZNF148:-0.252013616464;PAX4:-0.259777740273;SP1:-0.275052231316;HBP1_HMGB_SSRP1_UBTF:-0.302336941419;RFX2..5_RFXANK_RFXAP:-0.303919890128;TFAP2B:-0.304275853711;POU3F1..4:-0.304812702798;CREB1:-0.30816818061;TEF:-0.351991933366;ZNF143:-0.353230429379;MTE{core}:-0.366102018114;NFIL3:-0.381419822091;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.386664392741;XCPE1{core}:-0.393503156694;TBX4,5:-0.393999847505;EGR1..3:-0.394736125354;ATF4:-0.399090460753;TFDP1:-0.400863937081;JUN:-0.408237225581;T:-0.413241906483;IRF7:-0.422084099946;ONECUT1,2:-0.42547012987;NKX2-3_NKX2-5:-0.42629708561;PAX3,7:-0.434479764968;ELF1,2,4:-0.442610906968;FOSL2:-0.455460916448;SPI1:-0.465462671768;SREBF1,2:-0.465664301279;POU6F1:-0.484377737957;FOXN1:-0.489097507206;ETS1,2:-0.493550345636;RORA:-0.511390453018;NRF1:-0.521793949936;RBPJ:-0.556193753912;GFI1:-0.559018479287;ZFP161:-0.572641195137;HOXA9_MEIS1:-0.589313492134;FOXP1:-0.599082148307;SPIB:-0.634577162017;MYB:-0.650817710017;ATF2:-0.68558056051;FOXA2:-0.694105995994;POU2F1..3:-0.700021647676;PBX1:-0.705005077435;CUX2:-0.712971924193;PAX2:-0.728375800014;CDC5L:-0.756553950667;PITX1..3:-0.803505206286;ADNP_IRX_SIX_ZHX:-0.86880358408;GATA6:-0.88505097019;TLX2:-0.899051020635;FOXQ1:-0.9195730714;PDX1:-0.942616945128;CRX:-0.95341737437;BREu{core}:-0.954295103159;E2F1..5:-0.964914945027;FOXM1:-0.966192009841;SNAI1..3:-0.99226673594;ALX1:-0.99523678645;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.99565494363;POU1F1:-1.05431496433;NFY{A,B,C}:-1.06516377002;FOX{F1,F2,J1}:-1.07481903262;LMO2:-1.13885549929;SOX2:-1.15298368107;NANOG:-1.1810765651;POU5F1:-1.20949953159;EP300:-1.26689894255;ZEB1:-1.28955644521;OCT4_SOX2{dimer}:-1.29265179238;PAX6:-1.30921707725;SOX{8,9,10}:-1.46285137985;MYOD1:-1.57861093451;NR5A1,2:-1.68340747124;PPARG:-1.88360863137;VSX1,2:-2.00327298243
|top_motifs=NKX2-1,4:2.22719659631;FOXL1:2.14123911103;RXR{A,B,G}:2.11402142717;GZF1:2.09361936322;NKX2-2,8:1.92914844638;UFEwm:1.69426059799;ALX4:1.66988342111;AIRE:1.6165483428;EBF1:1.53190470501;ZNF238:1.5116452618;NR3C1:1.4166404261;ESR1:1.40071328492;KLF4:1.36255839082;FOXD3:1.34675728333;ATF6:1.31653373208;NKX3-1:1.29330727336;EVI1:1.27979950969;NFE2L1:1.23920507462;NFATC1..3:1.20470367151;SRF:1.17304855937;SOX5:1.06901119391;HMX1:1.06014463889;FOXO1,3,4:1.03958513299;HMGA1,2:1.02888035753;TP53:0.927398442601;PAX1,9:0.920454192344;TAL1_TCF{3,4,12}:0.918282511218;XBP1:0.91732193583;HES1:0.879036432044;RXRA_VDR{dimer}:0.876450970524;NKX3-2:0.844314835749;HIF1A:0.833877162315;NKX6-1,2:0.823478243384;TEAD1:0.815018046745;GATA4:0.814192052655;BPTF:0.797063780625;EN1,2:0.795608856019;GFI1B:0.77010012721;TFAP4:0.747066787732;ZBTB16:0.70538819121;GLI1..3:0.656150529261;TLX1..3_NFIC{dimer}:0.60720761387;MYBL2:0.568378472602;DBP:0.551713459642;ZIC1..3:0.472577425121;HOX{A5,B5}:0.457131052685;PAX5:0.441752721702;bHLH_family:0.42119739084;NANOG{mouse}:0.407219792276;TOPORS:0.391574192669;TFCP2:0.380579858408;DMAP1_NCOR{1,2}_SMARC:0.377979693673;HAND1,2:0.377970968794;HSF1,2:0.370543913131;HOX{A4,D4}:0.347712351301;NHLH1,2:0.341818920223;NFIX:0.338242871401;ZBTB6:0.330104014263;STAT2,4,6:0.324381710775;ZNF384:0.324330562916;YY1:0.320357822029;FOX{I1,J2}:0.320222428675;PRDM1:0.297640963988;IKZF1:0.295924499827;PATZ1:0.292810525184;MZF1:0.278675619254;ESRRA:0.277636270812;GTF2I:0.271555767703;IRF1,2:0.25744220469;GTF2A1,2:0.253073429224;AR:0.24594863635;NR6A1:0.224881606979;MAFB:0.221147987839;NR1H4:0.218359512599;HOX{A6,A7,B6,B7}:0.21751536105;FOX{D1,D2}:0.202104181729;FOXP3:0.186737623581;TBP:0.184729598747;AHR_ARNT_ARNT2:0.159841168406;TFAP2{A,C}:0.15921547213;ELK1,4_GABP{A,B1}:0.132410968916;HLF:0.113973619702;SOX17:0.111322053512;LHX3,4:0.0827985442566;MYFfamily:0.069280146463;NFE2L2:0.0559712453006;MTF1:0.0498601704687;ARID5B:0.0439720896153;MAZ:0.0329920369675;MEF2{A,B,C,D}:0.0326867278871;STAT1,3:0.0233153818639;LEF1_TCF7_TCF7L1,2:0.0229060618701;CEBPA,B_DDIT3:0.0171913725439;ZNF423:0.0171254294755;SPZ1:-0.0123952270008;RUNX1..3:-0.0170513698534;HNF4A_NR2F1,2:-0.0390721785903;STAT5{A,B}:-0.0443282425302;MED-1{core}:-0.053090487771;HNF1A:-0.0783896588876;RFX1:-0.0842566133374;GCM1,2:-0.0926189913482;BACH2:-0.0989303347493;IKZF2:-0.102320415967;RREB1:-0.105143189783;REST:-0.12220910802;CDX1,2,4:-0.138025000343;NFKB1_REL_RELA:-0.139434154158;PRRX1,2:-0.153702367639;NFE2:-0.161776876322;SMAD1..7,9:-0.203802392554;TGIF1:-0.212423181153;PAX8:-0.213650499704;FOS_FOS{B,L1}_JUN{B,D}:-0.229261767655;ATF5_CREB3:-0.233015956734;HIC1:-0.234510911276;ZNF148:-0.252013616464;PAX4:-0.259777740273;SP1:-0.275052231316;HBP1_HMGB_SSRP1_UBTF:-0.302336941419;RFX2..5_RFXANK_RFXAP:-0.303919890128;TFAP2B:-0.304275853711;POU3F1..4:-0.304812702798;CREB1:-0.30816818061;TEF:-0.351991933366;ZNF143:-0.353230429379;MTE{core}:-0.366102018114;NFIL3:-0.381419822091;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.386664392741;XCPE1{core}:-0.393503156694;TBX4,5:-0.393999847505;EGR1..3:-0.394736125354;ATF4:-0.399090460753;TFDP1:-0.400863937081;JUN:-0.408237225581;T:-0.413241906483;IRF7:-0.422084099946;ONECUT1,2:-0.42547012987;NKX2-3_NKX2-5:-0.42629708561;PAX3,7:-0.434479764968;ELF1,2,4:-0.442610906968;FOSL2:-0.455460916448;SPI1:-0.465462671768;SREBF1,2:-0.465664301279;POU6F1:-0.484377737957;FOXN1:-0.489097507206;ETS1,2:-0.493550345636;RORA:-0.511390453018;NRF1:-0.521793949936;RBPJ:-0.556193753912;GFI1:-0.559018479287;ZFP161:-0.572641195137;HOXA9_MEIS1:-0.589313492134;FOXP1:-0.599082148307;SPIB:-0.634577162017;MYB:-0.650817710017;ATF2:-0.68558056051;FOXA2:-0.694105995994;POU2F1..3:-0.700021647676;PBX1:-0.705005077435;CUX2:-0.712971924193;PAX2:-0.728375800014;CDC5L:-0.756553950667;PITX1..3:-0.803505206286;ADNP_IRX_SIX_ZHX:-0.86880358408;GATA6:-0.88505097019;TLX2:-0.899051020635;FOXQ1:-0.9195730714;PDX1:-0.942616945128;CRX:-0.95341737437;BREu{core}:-0.954295103159;E2F1..5:-0.964914945027;FOXM1:-0.966192009841;SNAI1..3:-0.99226673594;ALX1:-0.99523678645;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.99565494363;POU1F1:-1.05431496433;NFY{A,B,C}:-1.06516377002;FOX{F1,F2,J1}:-1.07481903262;LMO2:-1.13885549929;SOX2:-1.15298368107;NANOG:-1.1810765651;POU5F1:-1.20949953159;EP300:-1.26689894255;ZEB1:-1.28955644521;OCT4_SOX2{dimer}:-1.29265179238;PAX6:-1.30921707725;SOX{8,9,10}:-1.46285137985;MYOD1:-1.57861093451;NR5A1,2:-1.68340747124;PPARG:-1.88360863137;VSX1,2:-2.00327298243
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008191
|accession_numbers=DRX008299;DRR009171;DRZ000596;DRZ001981;CAGE
|library_id=CNhs12339
}}
}}

Revision as of 19:08, 17 October 2013


Name:Hair Follicle Outer Root Sheath Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12339
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuehair follicle
dev stageNA
sexNA
ageNA
cell typehair follicle, outer root sheath cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC2425
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008191
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12339 CAGE DRX008299 DRR009171
Accession ID Hg19

Library idBAMCTSS
CNhs12339 DRZ000596 DRZ001981
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.129
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.393
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.758
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.521
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0819
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.166
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.521
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.281
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.278
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.677
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.379
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.166
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.166
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0257
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.491
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.166
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.166
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.166
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.379
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0076
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.285
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.379
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.084
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12339

Jaspar motifP-value
MA0002.20.238
MA0003.10.372
MA0004.10.273
MA0006.10.489
MA0007.10.0451
MA0009.10.384
MA0014.10.794
MA0017.10.813
MA0018.20.0019
MA0019.10.528
MA0024.11.37605e-8
MA0025.10.00141
MA0027.10.568
MA0028.10.846
MA0029.10.89
MA0030.10.698
MA0031.10.454
MA0035.20.00659
MA0038.10.0116
MA0039.20.0884
MA0040.10.513
MA0041.10.765
MA0042.10.795
MA0043.10.0119
MA0046.10.264
MA0047.20.997
MA0048.10.0896
MA0050.10.968
MA0051.10.768
MA0052.10.754
MA0055.10.575
MA0057.10.855
MA0058.10.283
MA0059.10.692
MA0060.11.60152e-11
MA0061.10.798
MA0062.20.00237
MA0065.20.553
MA0066.10.394
MA0067.10.0546
MA0068.10.984
MA0069.10.129
MA0070.10.302
MA0071.10.917
MA0072.10.631
MA0073.10.824
MA0074.10.0464
MA0076.10.4
MA0077.10.103
MA0078.10.374
MA0079.20.109
MA0080.22.41241e-7
MA0081.10.049
MA0083.11.04269e-4
MA0084.10.017
MA0087.10.197
MA0088.10.369
MA0090.10.00164
MA0091.10.0959
MA0092.10.0984
MA0093.10.204
MA0099.22.23728e-4
MA0100.10.528
MA0101.10.0848
MA0102.20.885
MA0103.11.63034e-4
MA0104.20.396
MA0105.10.0334
MA0106.10.0854
MA0107.10.094
MA0108.20.109
MA0111.10.855
MA0112.20.00254
MA0113.10.0058
MA0114.10.308
MA0115.10.0538
MA0116.10.0605
MA0117.10.845
MA0119.10.00894
MA0122.10.652
MA0124.10.277
MA0125.10.423
MA0131.10.611
MA0135.10.318
MA0136.11.39435e-6
MA0137.20.366
MA0138.20.578
MA0139.10.825
MA0140.10.0824
MA0141.10.989
MA0142.10.704
MA0143.10.128
MA0144.10.043
MA0145.10.365
MA0146.10.168
MA0147.10.426
MA0148.10.839
MA0149.10.465
MA0150.10.00674
MA0152.10.0804
MA0153.10.74
MA0154.10.122
MA0155.10.677
MA0156.14.17065e-6
MA0157.10.0884
MA0159.10.511
MA0160.10.13
MA0162.10.104
MA0163.11.76246e-4
MA0164.10.624
MA0258.10.369
MA0259.10.424



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12339

Novel motifP-value
10.695
100.059
1000.62
1010.723
1020.0474
1030.0941
1040.404
1050.35
1060.119
1070.202
1080.31
1090.237
110.893
1100.404
1110.777
1120.363
1130.164
1140.0739
1150.853
1160.0337
1170.202
1180.927
1190.79
120.337
1200.199
1210.448
1220.00301
1230.00275
1240.617
1250.988
1260.699
1270.841
1280.112
1290.37
130.994
1300.853
1310.86
1320.23
1330.897
1340.581
1350.848
1360.396
1370.109
1380.972
1390.514
140.377
1400.426
1410.508
1420.859
1430.882
1440.226
1450.324
1460.969
1470.259
1480.395
1490.0342
150.473
1500.473
1510.678
1520.157
1530.115
1540.358
1550.14
1560.318
1570.727
1580.116
1590.652
160.0358
1600.122
1610.538
1620.357
1630.396
1640.0441
1650.916
1660.537
1670.862
1680.801
1690.0363
170.492
180.343
190.0139
20.703
200.747
210.166
220.156
230.385
240.975
250.369
260.0165
270.551
280.238
290.0538
30.0454
300.796
310.947
328.45585e-8
330.272
340.438
350.522
360.66
370.0153
380.658
390.484
40.0376
400.477
410.564
420.663
430.474
440.734
450.49
460.0901
470.994
480.768
490.643
50.819
500.592
510.805
520.82
530.155
540.77
553.31546e-4
560.62
570.868
580.435
590.199
60.829
600.77
610.639
620.813
630.335
640.332
650.369
660.263
670.613
680.467
690.454
70.26
700.114
710.0742
720.872
730.0154
740.35
750.19
760.432
770.157
780.829
790.0464
80.238
800.139
810.939
820.651
830.525
840.111
850.0661
860.838
870.733
880.106
890.155
90.599
900.363
910.806
920.0373
930.146
940.458
950.126
960.951
970.991
980.58
990.00193



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12339


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002559 (hair follicle cell)
0002561 (outer root sheath cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0005933 (hair root sheath)
0005942 (hair outer root sheath)
0002416 (integumental system)
0005932 (bulb of hair follicle)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000075 (human outer root sheath cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11504-119G1&oldid=3078838"