FFCP PHASE1:Hg19::chr17:20687991..20688022,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C220 | |||
|description=CAGE_peak_at_chr17:20687991..20688022,- | |||
|id=chr17:20687991..20688022,- | |||
|ontology_enrichment_celltype=CL:0000066!2.26e-16!254;CL:0000325!2.99e-10!39;CL:0000221!3.44e-07!71;CL:0002321!5.56e-07!248;CL:0000220!6.16e-07!246 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.34e-15,253;CL:0000221,3.21e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.06e-09!143;DOID:14566!5.26e-09!239;DOID:305!7.37e-09!106;DOID:162!1.33e-08!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,5.58e-09,143;DOID:305,2.48e-08,106;DOID:14566,8.22e-08,239;DOID:162,1.99e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000475!8.25e-19!365;UBERON:0004121!1.78e-17!169;UBERON:0000924!2.37e-17!173;UBERON:0006601!2.37e-17!173;UBERON:0000033!7.22e-16!123;UBERON:0000153!1.84e-14!129;UBERON:0007811!1.84e-14!129;UBERON:0000481!2.96e-14!347;UBERON:0000064!1.50e-13!219;UBERON:0000483!1.93e-12!309;UBERON:0000119!2.27e-12!312;UBERON:0000073!7.10e-12!94;UBERON:0001016!7.10e-12!94;UBERON:0005743!7.16e-12!86;UBERON:0001017!1.74e-11!82;UBERON:0004119!1.78e-10!169;UBERON:0000925!1.78e-10!169;UBERON:0006595!1.78e-10!169;UBERON:0000955!4.36e-10!69;UBERON:0006238!4.36e-10!69;UBERON:0003075!6.70e-10!86;UBERON:0007284!6.70e-10!86;UBERON:0002346!1.02e-09!90;UBERON:0000922!1.08e-09!612;UBERON:0002050!2.34e-09!605;UBERON:0005423!2.34e-09!605;UBERON:0000923!2.41e-09!604;UBERON:0005291!2.41e-09!604;UBERON:0006598!2.41e-09!604;UBERON:0002532!2.41e-09!604;UBERON:0000477!8.50e-09!286;UBERON:0003056!1.61e-08!61;UBERON:0000063!1.96e-08!97;UBERON:0001007!2.07e-08!155;UBERON:0001555!2.07e-08!155;UBERON:0007026!2.07e-08!155;UBERON:0002616!4.48e-08!59;UBERON:0000062!5.03e-08!511;UBERON:0001049!7.47e-08!57;UBERON:0005068!7.47e-08!57;UBERON:0006241!7.47e-08!57;UBERON:0007135!7.47e-08!57;UBERON:0000468!1.69e-07!659;UBERON:0001444!4.83e-07!48 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.38e-16,171;UBERON:0000924,3.38e-16,171;UBERON:0006601,3.38e-16,171;UBERON:0011216,2.04e-15,223;UBERON:0000483,5.46e-12,306;UBERON:0010371,5.67e-12,104;UBERON:0000119,6.39e-12,309;UBERON:0001017,2.27e-11,81;UBERON:0001016,5.23e-11,89;UBERON:0000955,5.26e-10,68;UBERON:0006238,5.26e-10,68;UBERON:0003075,7.06e-10,82;UBERON:0007284,7.06e-10,82;UBERON:0004119,1.47e-09,160;UBERON:0000925,1.47e-09,160;UBERON:0006595,1.47e-09,160;UBERON:0002346,1.55e-09,86;UBERON:0003056,9.78e-09,61;UBERON:0001049,9.49e-08,56;UBERON:0005068,9.49e-08,56;UBERON:0006241,9.49e-08,56;UBERON:0007135,9.49e-08,56;UBERON:0010314,9.87e-08,132;UBERON:0005423,1.31e-07,581;UBERON:0000922,1.91e-07,592;UBERON:0001007,2.04e-07,145;UBERON:0001555,2.04e-07,145;UBERON:0007026,2.04e-07,145;UBERON:0001444,2.92e-07,49 | |||
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| |||
|short_description=p@chr17:20687991..20688022,- | |||
}} |
Revision as of 14:15, 20 January 2014
Short description: | p@chr17:20687991..20688022, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:20687991..20688022, - |
Coexpression cluster: | C220_Adipocyte_mature_left_breast_skin_liver_adipose |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.34e-15 | 253 |
ectodermal cell | 3.21e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.38e-16 | 171 |
ectoderm | 3.38e-16 | 171 |
presumptive ectoderm | 3.38e-16 | 171 |
organ system subdivision | 2.04e-15 | 223 |
epithelium | 5.46e-12 | 306 |
ecto-epithelium | 5.67e-12 | 104 |
cell layer | 6.39e-12 | 309 |
central nervous system | 2.27e-11 | 81 |
nervous system | 5.23e-11 | 89 |
brain | 5.26e-10 | 68 |
future brain | 5.26e-10 | 68 |
neural plate | 7.06e-10 | 82 |
presumptive neural plate | 7.06e-10 | 82 |
endoderm-derived structure | 1.47e-09 | 160 |
endoderm | 1.47e-09 | 160 |
presumptive endoderm | 1.47e-09 | 160 |
neurectoderm | 1.55e-09 | 86 |
pre-chordal neural plate | 9.78e-09 | 61 |
neural tube | 9.49e-08 | 56 |
neural rod | 9.49e-08 | 56 |
future spinal cord | 9.49e-08 | 56 |
neural keel | 9.49e-08 | 56 |
structure with developmental contribution from neural crest | 9.87e-08 | 132 |
developing anatomical structure | 1.31e-07 | 581 |
embryo | 1.91e-07 | 592 |
digestive system | 2.04e-07 | 145 |
digestive tract | 2.04e-07 | 145 |
primitive gut | 2.04e-07 | 145 |
subdivision of head | 2.92e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 5.58e-09 | 143 |
carcinoma | 2.48e-08 | 106 |
disease of cellular proliferation | 8.22e-08 | 239 |
cancer | 1.99e-07 | 235 |