FFCP PHASE1:Hg19::chr2:216257795..216257824,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=2335 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=101bp_to_uc010zjp.1_5end | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_54_at_FN1_5end | |||
|id=chr2:216257795..216257824,- | |||
|ontology_enrichment_celltype=CL:0000055!1.17e-31!180;CL:0000057!1.62e-22!75;CL:0000680!4.18e-15!57;CL:0000056!4.18e-15!57;CL:0000355!4.18e-15!57;CL:0000183!1.18e-14!59;CL:0000187!2.70e-14!54;CL:0002371!2.18e-12!591;CL:0002620!4.96e-12!23;CL:0000393!7.63e-12!60;CL:0000211!7.63e-12!60;CL:0000144!6.72e-11!625;CL:0002494!2.42e-09!16;CL:0000048!2.13e-08!430;CL:0000192!9.91e-08!42;CL:0000514!9.91e-08!42;CL:0000723!1.18e-07!436;CL:0000188!1.34e-07!9;CL:0000034!1.53e-07!444;CL:0000548!2.40e-07!679;CL:0000004!2.40e-07!679;CL:0000255!2.40e-07!679;CL:0000012!5.40e-07!682;CL:0000222!6.37e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000188;3.72e-11;9!CL:0000723;1.30e-10;61!CL:0000134;3.75e-10;55!CL:0000349;2.00e-09;19!CL:0002620;4.92e-09;23!CL:0002570;1.27e-08;8!CL:0000034;1.77e-08;69!CL:0000048;2.31e-08;58!CL:0002494;4.51e-08;16!CL:0000057;8.84e-08;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.50e-19,76;CL:0000188,2.02e-11,9;CL:0000048,2.72e-11,427;CL:0000723,9.96e-11,433;CL:0000034,2.18e-10,441;CL:0000349,1.25e-09,19;CL:0002620,5.05e-09,23;CL:0002570,1.87e-08,8;CL:0000680,4.18e-08,58;CL:0000056,4.18e-08,58;CL:0000355,4.18e-08,58;CL:0000187,4.37e-08,55;CL:0002494,5.41e-08,16;CL:0002320,8.59e-08,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;5.74e-07;5!DOID:450;5.74e-07;5!DOID:66;5.74e-07;5!DOID:423;5.74e-07;5!DOID:0080000;5.74e-07;5!DOID:11722;5.74e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,4.81e-07,5;DOID:450,4.81e-07,5;DOID:66,4.81e-07,5;DOID:423,4.81e-07,5;DOID:0080000,4.81e-07,5;DOID:11722,4.81e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0005256!1.43e-16!143;UBERON:0000914!2.09e-16!83;UBERON:0002329!2.09e-16!83;UBERON:0003077!2.09e-16!83;UBERON:0003059!2.09e-16!83;UBERON:0007282!2.09e-16!83;UBERON:0009618!2.09e-16!83;UBERON:0007285!2.09e-16!83;UBERON:0004290!1.00e-14!70;UBERON:0001134!5.62e-13!61;UBERON:0002036!5.62e-13!61;UBERON:0003082!5.62e-13!61;UBERON:0002385!7.25e-13!63;UBERON:0001015!7.25e-13!63;UBERON:0000383!7.25e-13!63;UBERON:0000486!8.64e-13!82;UBERON:0000490!6.77e-09!138;UBERON:0002199!1.05e-08!45;UBERON:0002416!1.05e-08!45;UBERON:0002100!1.76e-08!216;UBERON:0000475!8.32e-08!365;UBERON:0005631!1.13e-07!14;UBERON:0000158!1.13e-07!14;UBERON:0004872!1.69e-07!84;UBERON:0003102!2.43e-07!95;UBERON:0003104!6.33e-07!238;UBERON:0009142!6.33e-07!238;UBERON:0000481!8.65e-07!347;UBERON:0002097!9.66e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.66e-08;24!UBERON:0001013;9.21e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.04e-08,14;UBERON:0000158,1.04e-08,14;UBERON:0002384,2.34e-08,371;UBERON:0007524,2.37e-08,73;UBERON:0002329,5.14e-08,71;UBERON:0003059,5.14e-08,71;UBERON:0007282,5.14e-08,71;UBERON:0004290,5.14e-08,71;UBERON:0009618,5.14e-08,71;UBERON:0000478,5.43e-08,24;UBERON:0003077,8.53e-08,72;UBERON:0007285,8.53e-08,72;UBERON:0002385,2.51e-07,64;UBERON:0001015,2.51e-07,64;UBERON:0000383,2.51e-07,64;UBERON:0003124,3.64e-07,7;UBERON:0001134,3.85e-07,62;UBERON:0002036,3.85e-07,62;UBERON:0003082,3.85e-07,62;UBERON:0000486,6.56e-07,83;UBERON:0002199,8.26e-07,46;UBERON:0002416,8.26e-07,46;UBERON:0001013,8.93e-07,14 | |||
|phase1_expression=0.726713517082227,0.856402095563933,0,0,0,1.74467704820074,2.53299878168311,0.631719873426831,0.783556884599516,0.737201809504527,0.697801167972428,4.58726881473362,6.59417445571134,1.23766352960047,1.32558950291166,0,3.61616716814386,0,1.46379839637152,0.61560529038394,1.22400414746552,0.626909442956176,0,0.273748850145768,1.50651167513763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,4.02420515822182,2.04580098949649,0.361439152384566,0,0.869079113764942,2.3858578411533,16.5455855902896,0.189069634328136,1.99556457716308,0.966182642624386,0,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,4.47274756525787,1.8994576749687,2.51577443545116,8.89193524321323,2.83734705758686,0.560677600142307,1.06748995729705,6.166688710429,2.8008993185979,1.48181739276657,2.12500474047496,3.02714855289863,6.33793516927999,0.468642863667593,2.80944069147288,0.570471821544449,3.13842229158782,0.939475989150119,1.13311061057692,0.842704840213491,0.61246251376468,0.859840221182376,0.929932030581889,0,1.7308685049499,0.910161361938026,0,1.34668891163253,2.25213335769535,0,0.877955241761676,1.22595118319608,1.35214253015937,0.907457465280168,3.58779271377724,2.56268866582281,3.81477422087211,3.30100205692843,1.33968288009971,1.54584324027377,0.18611685633159,1.85653965465393,0.974370051611986,2.52433774244115,2.02509777013059,0.969876340912871,4.26011511019937,1.30977727695932,0.67824236924195,0.386521706326594,0,0,0,0,0.69716365721711,0.518305275076852,1.00928340350251,0,0,1.28648187638577,0,1.39310378409594,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,2.057870056657,1.47008711385542,0,0.982827216677626,0,0,0.368965315629341,0.857839051492628,0,0,0,0,0.651616610620649,0,2.88662684050547,0.115930404975077,3.28744343860301,0,0,0,0,0,0,0,0,0,0.503946384596579,0,1.61205340865127,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,1.24675085895615,1.55126058909333,10.7296933755565,5.917119267892,0.531876233169741,0,1.28603687131071,0,0.532844358032199,1.00084595560703,1.08524321078289,3.29296134712308,0,1.06617584622764,1.58390374586686,0.602878754119172,0,0.399891964728228,0,0,0,0.718874566474748,0,1.42636905040718,0.434343920002738,1.84928690295345,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,2.33113834266366,3.50119364741774,2.17012018959788,4.99130067673937,9.99202337264106,2.52323864054295,1.05427273493442,0,0,1.03473071292505,3.98535359121262,1.65932251687533,1.30325421702124,0.783204629850962,1.02943027143257,0,0,0,0.303127571446259,3.32870879020994,3.93107381328584,1.48864684691266,0.61384789315225,1.96462066103151,0,1.02341449813341,1.12597744800525,0,3.70103265126373,2.13074070375753,1.23190734020714,0,2.09178681227927,0.846016147141356,3.40860999515584,0,0.803701137152247,0.910455840033585,0.917870904715969,0,0.0770153371044148,0,1.46139224653261,0.633309773357254,0,0,0.431831832204279,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0.656029291399411,0,0.412164046590889,0.183138929636687,0.082509499920588,0,0.650060246036521,3.21367859688319,3.28680442193215,2.00263202249038,4.1445992176055,1.92971201478343,5.15617175367713,7.97591816528257,3.66474497889234,1.78064071293475,1.32227932288782,0.576570202095319,1.27612712494584,0.910420027699949,0.929691098594572,8.18512101759664,0,0.308033580176089,0.532306030317022,0,0.74129687641568,0.286249773483982,0.372158369359667,4.11293252134344,0.762520775695299,0.255897791311334,0.855877976067841,1.27281299170375,2.35484592059769,0.179872457583315,0.274537029736055,0.942499218765491,0.606547444719948,1.58510321173008,0.421258456238981,0.48763373908959,0.243713489631284,0,0.545999645631943,0.848432591722276,0,0,0,0.438450885253763,0.578775534266688,3.9353685122798,1.42037263873893,1.54911749049875,1.12678241012897,0.860468113224309,1.08073945114433,2.49669736036875,0.709522128141196,1.26664581178598,1.97576935775941,0.379473173765715,0.349934720244983,0,0,0,0.470719003883896,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,6.20735660317994,0.296964680832639,1.53580351049616,0,0,10.9082530922448,0,0,0,0,0,0,0,17.1071773213994,0,0,0,0.493217028184668,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.153900517007594,0.227884111694002,0,0,0,31.9001159731919,1.83195186803725,139.655111316882,0,0,0,0,0,0,0,0,0.632994193584081,0,0.848118428603645,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,1.20990716048664,0.30607276163049,0.252746318513952,0,0,0,0,0.313932918407225,0,0,0,0,0,0.0870592065804026,0.34945333648406,0,0,0,0,0.193978032976839,0,0.225980740780532,0.548167698587004,0,0.0633107959558787,0,0,0,0,0,0,0.343189995723929,0,0,0,0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| |||
|short_description=p54@FN1 | |||
}} |
Revision as of 08:22, 21 January 2014
Short description: | p54@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_54_at_FN1_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 101bp_to_uc010zjp.1_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.50e-19 | 76 |
cell of skeletal muscle | 2.02e-11 | 9 |
multi fate stem cell | 2.72e-11 | 427 |
somatic stem cell | 9.96e-11 | 433 |
stem cell | 2.18e-10 | 441 |
extraembryonic cell | 1.25e-09 | 19 |
skin fibroblast | 5.05e-09 | 23 |
mesenchymal stem cell of adipose | 1.87e-08 | 8 |
muscle precursor cell | 4.18e-08 | 58 |
myoblast | 4.18e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.18e-08 | 58 |
muscle cell | 4.37e-08 | 55 |
cardiocyte | 5.41e-08 | 16 |
connective tissue cell | 8.59e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.04e-08 | 14 |
membranous layer | 1.04e-08 | 14 |
connective tissue | 2.34e-08 | 371 |
dense mesenchyme tissue | 2.37e-08 | 73 |
somite | 5.14e-08 | 71 |
presomitic mesoderm | 5.14e-08 | 71 |
presumptive segmental plate | 5.14e-08 | 71 |
dermomyotome | 5.14e-08 | 71 |
trunk paraxial mesoderm | 5.14e-08 | 71 |
extraembryonic structure | 5.43e-08 | 24 |
paraxial mesoderm | 8.53e-08 | 72 |
presumptive paraxial mesoderm | 8.53e-08 | 72 |
muscle tissue | 2.51e-07 | 64 |
musculature | 2.51e-07 | 64 |
musculature of body | 2.51e-07 | 64 |
chorion | 3.64e-07 | 7 |
skeletal muscle tissue | 3.85e-07 | 62 |
striated muscle tissue | 3.85e-07 | 62 |
myotome | 3.85e-07 | 62 |
multilaminar epithelium | 6.56e-07 | 83 |
integument | 8.26e-07 | 46 |
integumental system | 8.26e-07 | 46 |
adipose tissue | 8.93e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 4.81e-07 | 5 |
myotonic disease | 4.81e-07 | 5 |
muscle tissue disease | 4.81e-07 | 5 |
myopathy | 4.81e-07 | 5 |
muscular disease | 4.81e-07 | 5 |
myotonic dystrophy | 4.81e-07 | 5 |