FFCP PHASE1:Hg19::chr4:185771741..185771768,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1939 | |||
|description=CAGE_peak_at_chr4:185771741..185771768,- | |||
|id=chr4:185771741..185771768,- | |||
|ontology_enrichment_celltype=CL:0002057!5.24e-59!42;CL:0000860!1.42e-54!45;CL:0002194!5.51e-39!63;CL:0000576!5.51e-39!63;CL:0000040!5.51e-39!63;CL:0000559!5.51e-39!63;CL:0000766!7.68e-39!76;CL:0002009!1.43e-37!65;CL:0002087!4.37e-37!119;CL:0000738!7.21e-36!140;CL:0000839!2.18e-34!70;CL:0000557!8.37e-34!71;CL:0002031!2.39e-31!124;CL:0000988!2.63e-30!182;CL:0000037!2.54e-27!172;CL:0000566!2.54e-27!172;CL:0002032!8.40e-26!165;CL:0000837!8.40e-26!165;CL:0000763!7.81e-24!112;CL:0000049!7.81e-24!112;CL:0000080!5.83e-15!6;CL:0000134!5.79e-08!358;CL:0002320!1.26e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.71e-50;33!CL:0002057;2.71e-50;33!CL:0000473;3.19e-32;39!CL:0000234;3.19e-32;39!CL:0000576;1.03e-22;48!CL:0000766;5.61e-16;69!CL:0002087;7.76e-11;104!CL:0000775;7.18e-10;3!CL:0000763;9.31e-09;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.49e-42,42;CL:0002057,1.49e-42,42;CL:0000473,8.09e-37,48;CL:0000234,8.09e-37,48;CL:0000766,2.96e-29,72;CL:0002194,8.74e-29,59;CL:0000576,8.74e-29,59;CL:0000040,8.74e-29,59;CL:0000559,8.74e-29,59;CL:0002009,9.51e-28,61;CL:0000839,2.00e-25,66;CL:0000557,5.29e-25,67;CL:0000738,1.79e-21,136;CL:0002087,2.36e-21,115;CL:0000988,6.22e-21,177;CL:0002031,2.66e-20,120;CL:0000763,2.37e-18,108;CL:0000049,2.37e-18,108;CL:0002032,1.77e-17,161;CL:0000837,1.77e-17,161;CL:0000037,1.43e-16,168;CL:0000775,7.18e-10,3 | |||
|ontology_enrichment_development_v019=CL:0002057;3.67e-28;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4960;2.19e-08;1!DOID:0070004;2.19e-08;1!DOID:0060060;9.29e-08;1!DOID:0060061;9.29e-08;1!DOID:8691;9.29e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4960,2.19e-08,1;DOID:0070004,2.19e-08,1;DOID:0060060,1.06e-07,1;DOID:0060061,1.06e-07,1;DOID:8691,1.06e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.62e-53!102;UBERON:0003061!3.62e-53!102;UBERON:0002193!1.53e-47!112;UBERON:0002371!1.15e-31!80;UBERON:0001474!6.08e-29!86;UBERON:0002405!1.64e-24!115;UBERON:0004765!1.53e-23!101;UBERON:0001434!1.53e-23!101;UBERON:0000178!7.14e-22!15;UBERON:0000179!7.14e-22!15;UBERON:0000463!7.14e-22!15;UBERON:0003081!8.37e-20!216;UBERON:0002204!2.37e-11!167;UBERON:0002384!3.59e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.09e-21;15!UBERON:0000179;3.09e-21;15!UBERON:0000463;3.09e-21;15!UBERON:0002390;2.09e-12;32!UBERON:0002193;4.06e-07;42!UBERON:0002331;6.36e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.60e-38,98;UBERON:0003061,9.60e-38,98;UBERON:0002193,7.25e-34,108;UBERON:0002371,1.34e-24,76;UBERON:0001474,1.46e-22,82;UBERON:0000178,3.96e-21,15;UBERON:0000179,3.96e-21,15;UBERON:0000463,3.96e-21,15;UBERON:0004765,2.89e-20,90;UBERON:0002405,1.67e-19,93;UBERON:0001434,6.65e-18,100;UBERON:0003081,6.08e-16,203;UBERON:0002204,2.44e-09,167;UBERON:0000926,1.31e-08,315;UBERON:0004120,1.31e-08,315;UBERON:0006603,1.31e-08,315;UBERON:0002331,6.36e-07,10;UBERON:0000358,6.36e-07,10;UBERON:0000307,6.36e-07,10;UBERON:0000091,6.36e-07,10;UBERON:0000087,6.36e-07,10;UBERON:0007010,6.36e-07,10;UBERON:0007806,6.36e-07,10;UBERON:0008780,6.36e-07,10;UBERON:0005728,6.36e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.410502947249729,0.236132343941038,0,0,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0,0,0,0,0,0.377875943688809,0.242584061187816,0,0.411167888021826,0,3.45230870786581,5.37937483711111,1.6553756092201,2.75796544589295,0,0,0,0,0.449446968890169,2.14258724659632,2.24650318953266,1.91801137739712,0.329851300186716,4.9865914405408,1.70489900213078,4.64334781805734,3.97169657283798,2.4912889959823,4.52247597462138,5.21482918420201,0.868755378820466,8.47559303686716,3.68277635987565,1.89877432464531,0,0.212604299965044,0,0.22465726229299,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49801404789436,0,5.38740167466846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,1.13929437434833,0,0.411362273086194,3.24236655596359,0,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.13127361030843,0,0,0,0,0,8.00051235496952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.971281761183,17.6696432693499,15.4544485268074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39991177098451,0,8.43853400337997,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.961705476909699 | |||
|short_description=p@chr4:185771741..185771768,- | |||
}} |
Revision as of 04:16, 22 January 2014
Short description: | p@chr4:185771741..185771768, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:185771741..185771768, - |
Coexpression cluster: | C1939_cord_myeloma_CD14_Neutrophils_b_Whole_anaplastic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.49e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.49e-42 | 42 |
defensive cell | 8.09e-37 | 48 |
phagocyte | 8.09e-37 | 48 |
myeloid leukocyte | 2.96e-29 | 72 |
monopoietic cell | 8.74e-29 | 59 |
monocyte | 8.74e-29 | 59 |
monoblast | 8.74e-29 | 59 |
promonocyte | 8.74e-29 | 59 |
macrophage dendritic cell progenitor | 9.51e-28 | 61 |
myeloid lineage restricted progenitor cell | 2.00e-25 | 66 |
granulocyte monocyte progenitor cell | 5.29e-25 | 67 |
leukocyte | 1.79e-21 | 136 |
nongranular leukocyte | 2.36e-21 | 115 |
hematopoietic cell | 6.22e-21 | 177 |
hematopoietic lineage restricted progenitor cell | 2.66e-20 | 120 |
myeloid cell | 2.37e-18 | 108 |
common myeloid progenitor | 2.37e-18 | 108 |
hematopoietic oligopotent progenitor cell | 1.77e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.77e-17 | 161 |
hematopoietic stem cell | 1.43e-16 | 168 |
neutrophil | 7.18e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.60e-38 | 98 |
blood island | 9.60e-38 | 98 |
hemolymphoid system | 7.25e-34 | 108 |
bone marrow | 1.34e-24 | 76 |
bone element | 1.46e-22 | 82 |
blood | 3.96e-21 | 15 |
haemolymphatic fluid | 3.96e-21 | 15 |
organism substance | 3.96e-21 | 15 |
skeletal element | 2.89e-20 | 90 |
immune system | 1.67e-19 | 93 |
skeletal system | 6.65e-18 | 100 |
lateral plate mesoderm | 6.08e-16 | 203 |
musculoskeletal system | 2.44e-09 | 167 |
mesoderm | 1.31e-08 | 315 |
mesoderm-derived structure | 1.31e-08 | 315 |
presumptive mesoderm | 1.31e-08 | 315 |
umbilical cord | 6.36e-07 | 10 |
blastocyst | 6.36e-07 | 10 |
blastula | 6.36e-07 | 10 |
bilaminar disc | 6.36e-07 | 10 |
inner cell mass | 6.36e-07 | 10 |
cleaving embryo | 6.36e-07 | 10 |
connecting stalk | 6.36e-07 | 10 |
inner cell mass derived epiblast | 6.36e-07 | 10 |
extraembryonic mesoderm | 6.36e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 2.19e-08 | 1 |
myeloma | 2.19e-08 | 1 |
non-Hodgkin lymphoma | 1.06e-07 | 1 |
cutaneous T cell lymphoma | 1.06e-07 | 1 |
mycosis fungoides | 1.06e-07 | 1 |