FFCP PHASE1:Hg19::chr6:21666633..21666681,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401237 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=28245 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_NR_015410,uc003ndj.2,uc011djj.1_5end | |||
|coexpression_cluster_id=C724 | |||
|description=CAGE_peak_1_at_LINC00340_5end | |||
|id=chr6:21666633..21666681,+ | |||
|ontology_enrichment_celltype=CL:0000115!2.92e-13!35;CL:0002139!7.29e-12!24;CL:0002078!7.35e-10!44;CL:0000222!9.63e-10!119;CL:0000393!2.94e-09!60;CL:0000211!2.94e-09!60;CL:0000071!3.54e-08!18;CL:0002546!3.54e-08!18;CL:0000183!2.22e-07!59;CL:0000047!5.92e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.91e-15;24!CL:0000115;7.22e-15;36!CL:0000071;6.10e-10;18!CL:0002078;2.42e-09;45!CL:0000540;1.59e-07;6!CL:0000404;1.59e-07;6!CL:0002138;7.10e-07;6!CL:0002319;9.38e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,2.99e-17,36;CL:0002139,5.75e-15,24;CL:0002078,4.06e-14,45;CL:0000071,5.91e-10,18;CL:0002546,5.91e-10,18;CL:0000222,3.98e-09,121;CL:0000047,5.34e-09,8;CL:0000213,1.52e-08,58;CL:0000215,1.52e-08,58;CL:0000540,1.68e-07,6;CL:0000031,1.68e-07,6;CL:0000404,1.68e-07,6;CL:0005020,7.17e-07,6;CL:0002138,7.17e-07,6;CL:0005022,7.17e-07,6;CL:0002319,8.64e-07,25 | |||
|ontology_enrichment_development_v019=CL:0002546;6.10e-10;18!CL:0000031;1.59e-07;6!CL:0005022;7.10e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!1.42e-23!241;UBERON:0000477!7.86e-23!286;UBERON:0000025!4.46e-22!194;UBERON:0002049!7.44e-19!79;UBERON:0007798!7.44e-19!79;UBERON:0001009!1.84e-18!113;UBERON:0000119!5.07e-18!312;UBERON:0004535!5.67e-18!110;UBERON:0000483!8.16e-18!309;UBERON:0000055!9.23e-16!69;UBERON:0003914!2.56e-15!118;UBERON:0004872!1.42e-14!84;UBERON:0001981!3.80e-14!60;UBERON:0007500!3.80e-14!60;UBERON:0004537!3.80e-14!60;UBERON:0006965!3.80e-14!60;UBERON:0007023!1.39e-12!115;UBERON:0005743!2.27e-12!86;UBERON:0001017!4.88e-12!82;UBERON:0003103!2.33e-11!69;UBERON:0000073!3.27e-11!94;UBERON:0001016!3.27e-11!94;UBERON:0000481!5.46e-11!347;UBERON:0000922!5.97e-11!612;UBERON:0003075!1.37e-10!86;UBERON:0007284!1.37e-10!86;UBERON:0000467!4.86e-10!625;UBERON:0000480!6.83e-10!626;UBERON:0000468!7.57e-10!659;UBERON:0002346!1.13e-09!90;UBERON:0001637!1.44e-09!42;UBERON:0003509!1.44e-09!42;UBERON:0004572!1.44e-09!42;UBERON:0004573!5.08e-09!33;UBERON:0004571!5.08e-09!33;UBERON:0002050!1.00e-08!605;UBERON:0005423!1.00e-08!605;UBERON:0000923!2.23e-08!604;UBERON:0005291!2.23e-08!604;UBERON:0006598!2.23e-08!604;UBERON:0002532!2.23e-08!604;UBERON:0001049!2.29e-08!57;UBERON:0005068!2.29e-08!57;UBERON:0006241!2.29e-08!57;UBERON:0007135!2.29e-08!57;UBERON:0000153!3.22e-08!129;UBERON:0007811!3.22e-08!129;UBERON:0001986!3.54e-08!18;UBERON:0004638!3.54e-08!18;UBERON:0004852!3.54e-08!18;UBERON:0003056!7.31e-08!61;UBERON:0002616!1.18e-07!59;UBERON:0000955!2.28e-07!69;UBERON:0006238!2.28e-07!69;UBERON:0004121!2.54e-07!169;UBERON:0000033!2.57e-07!123;UBERON:0000924!7.20e-07!173;UBERON:0006601!7.20e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;2.16e-14;49!UBERON:0004573;7.61e-11;33!UBERON:0004571;7.61e-11;33!UBERON:0004638;6.10e-10;18!UBERON:0001986;6.10e-10;18!UBERON:0004852;6.10e-10;18!UBERON:0001637;2.30e-09;42!UBERON:0003509;2.30e-09;42!UBERON:0004572;2.30e-09;42!UBERON:0000055;2.79e-09;65!UBERON:0003914;6.80e-09;74!UBERON:0007500;1.61e-08;56!UBERON:0001981;1.61e-08;56!UBERON:0004537;1.61e-08;56!UBERON:0002049;2.43e-08;75!UBERON:0007798;2.43e-08;75!UBERON:0000487;2.46e-08;22!UBERON:0006914;5.26e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,7.59e-22,78;UBERON:0007798,7.59e-22,78;UBERON:0000055,2.86e-20,68;UBERON:0004535,9.20e-20,109;UBERON:0001009,2.03e-19,112;UBERON:0004111,2.66e-18,240;UBERON:0007500,1.92e-17,59;UBERON:0001981,1.92e-17,59;UBERON:0004537,1.92e-17,59;UBERON:0006965,1.92e-17,59;UBERON:0003914,1.16e-16,117;UBERON:0000025,1.18e-15,192;UBERON:0004872,2.03e-15,83;UBERON:0000119,7.78e-12,309;UBERON:0000483,8.24e-12,306;UBERON:0004573,1.48e-11,33;UBERON:0004571,1.48e-11,33;UBERON:0001637,7.03e-11,42;UBERON:0003509,7.03e-11,42;UBERON:0004572,7.03e-11,42;UBERON:0003103,3.81e-10,68;UBERON:0004638,5.91e-10,18;UBERON:0001986,5.91e-10,18;UBERON:0004852,5.91e-10,18;UBERON:0000922,8.00e-10,592;UBERON:0000487,2.29e-08,22;UBERON:0006914,5.01e-08,25;UBERON:0005423,8.04e-08,581;UBERON:0002050,7.76e-07,564;UBERON:0006555,9.17e-07,16;UBERON:0004819,9.17e-07,16;UBERON:0000923,9.68e-07,560;UBERON:0010316,9.68e-07,560;UBERON:0005291,9.68e-07,560;UBERON:0006598,9.68e-07,560;UBERON:0010317,9.68e-07,560;UBERON:0002532,9.68e-07,560 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.7030733015166,6.28021051175185,0,0,0.37129905888014,0,5.3786011716142,6.02694528023977,2.92124036154949,3.41552959153355,2.70866327768933,0.204000691244253,3.76145665773705,9.15955158819382,9.17058647988324,11.8010081219115,0,0.328402357799783,0.0787107813136792,0,0,0.928896739896456,0,0,0,0,0,8.51441274071057,0.553995408531877,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.0776922873857,12.8916969485753,4.21414535640123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,2.68280343881454,0.639312809217652,0,0.50133791063589,0,0.795285947051099,0.486634870302636,9.54801653357085,8.64744650103999,10.452339497482,4.58426764241994,0,0,0.649094787309367,0,0.132957960518865,0.238490624305342,0.571994910780128,0,3.7764857399674,0,7.28995053375948,5.08777147731609,7.1314904155684,2.47606237746061,1.67195973229448,7.75250277507987,9.60568909254118,18.0749130892922,2.01414658554573,0.760272105718513,5.12530320851156,4.41195696415042,2.43042584364528,4.46498641420399,2.2452937262617,1.91439516821648,7.66583187329416,7.59412527654503,3.66403487860815,0,0,0,0,1.2663051166458,0.132409180813219,1.72101972449288,0,0,10.6748995729705,0.24666754841716,0.622422070799533,2.82892411346345,1.63461903113459,0.605429710579726,0,0.234321431833797,0,0,0,1.05691048779388,0.971237666208789,0.98315564691574,0,0.982674538494144,0,0,0.247266929278557,0,0,0.841680569770331,1.50142223846357,0,0.438977620880838,0,0,0.226864366320042,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0.545492241181669,0,5.85473789422058,5.56625026950238,4.53156377191122,5.90868013587612,4.54177531576131,14.2341170039574,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,4.42893272774789,4.20725321410337,1.2347220339942,0,0,0,0,13.6853560818542,0,1.54411029268673,0.109750285408626,0,0,0,0,0,4.3299402607582,7.9991979432803,1.87853910777315,6.20775725372617,4.62985512576611,7.03940363268014,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0.414656231081544,0.144119953416961,0,0,0,0,1.71072446022705,0,0,0,0.448524337381443,2.61576041299968,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20575750823834,0.871533458600294,0.599837947092342,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,2.7950408664471,11.712586847186,10.8260433788877,9.21339459338918,11.4828975297569,0,0,0,0,0,0,0,0,0,0,0,0,3.10419213877515,0,0,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,1.03850885836724,0,0,3.20810352485256,0.184161977871793,0.114814448164607,0,0,1.80479845162965,2.69553679865452,3.13739907670742,1.46139224653261,3.16654886678627,3.4120015221269,1.87103075804167,1.29549549661284,1.54227252690289,1.35473218771926,2.50844886927427,0,0,3.35812132083267,0,0,0,0.656029291399411,0.325378394664303,1.44257416306811,0,0,0,0,0,0.96670718292122,0.154048617114644,0.307007349452259,0.275673144969061,0.214840489736547,0,0.0852266274161009,1.06838442776085,0.495854746082934,1.34533047155574,12.888883961953,0.50578890427775,0,1.5740617341532,3.485186350803,2.46426864140871,0,0.869932992075073,4.633105477598,7.87186877080952,0.372158369359667,0.316379424718726,0.571890581771475,0.767693373934002,1.71175595213568,0,7.06453776179307,0,0.823611089208164,0.706874414074119,2.02182481573316,1.58510321173008,3.37006764991185,0.975267478179181,2.43713489631284,3.16950440270266,0,0.848432591722276,0,2.2054613741845,1.99031692572366,1.31535265576129,1.15755106853338,2.62357900818653,0.405820753925408,1.54911749049875,0.845086807596724,0,0,0,0,0,0,1.51789269506286,3.14941248220485,0.0962221127255121,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,3.34795172730527,0,6.8941933247652,0.211673582723883,0.973865820823666,1.96558024679421,0,0,10.0253790836027,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81974010175699,0,0.879049075631364,4.12625773948346,0,0,0,0.890894042497916,0,0,0.281338832821026,0,0,0,9.96239941255349,1.93398740871803,0,0.306806047506464,0,0,0,0,0,3.94573622547734,0,0,0,0.0927680981618513,11.9768278800717,0,0,2.89999830173917,0,0,0,0,0,1.38899995946634,3.54296554325536,1.5677537021303,0,0.442317039724898,0,0.658156191461918,0,0,10.4652351565164,0,0,0.0897576444097721,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0.476809736941136,0,0.163232808159148,0,0,4.97630965539252,1.50377859655677,3.66618086960175,18.3843099781986,9.14373148204121,11.0687266475783,1.88723172345896,7.2231988256891,0.234264445725339,0,0,0,5.91876604274086,6.04953580243319,46.829132529465,1.26373159256976,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,2.42472541221049,0,4.29363407483012,0,0,0.50648636764703,0.391102765469606,0.160317640503067,5.12287187374446,0.19980960958213,0,0,0,0,0,0,3.53350935791397,4.18411385249333,0,0,0.600420288709789,0.547621515567972,15.3295905680367,0,4.73197237702766,7.81990723562312,6.41649187232714,1.43574604915363,0.599037001496973,1.71690419254628,0.22317145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| |||
|short_description=p1@LINC00340 | |||
}} |
Revision as of 10:24, 22 January 2014
Short description: | p1@LINC00340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINC00340_5end |
Coexpression cluster: | C724_transitionalcell_parietal_occipital_duodenum_temporal_non_CD34 |
Association with transcript: | 0bp_to_NR_015410, uc003ndj.2, uc011djj.1_5end |
EntrezGene: | LINC00340 |
HGNC: | 28245 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 2.99e-17 | 36 |
endothelial cell of vascular tree | 5.75e-15 | 24 |
meso-epithelial cell | 4.06e-14 | 45 |
blood vessel endothelial cell | 5.91e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.91e-10 | 18 |
mesodermal cell | 3.98e-09 | 121 |
neuronal stem cell | 5.34e-09 | 8 |
lining cell | 1.52e-08 | 58 |
barrier cell | 1.52e-08 | 58 |
neuron | 1.68e-07 | 6 |
neuroblast | 1.68e-07 | 6 |
electrically signaling cell | 1.68e-07 | 6 |
lymphangioblast | 7.17e-07 | 6 |
endothelial cell of lymphatic vessel | 7.17e-07 | 6 |
vascular lymphangioblast | 7.17e-07 | 6 |
neural cell | 8.64e-07 | 25 |