FFCP PHASE1:Mm9::chr10:126497219..126497262,-: Difference between revisions
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{{FFCP|EntrezGene=216438|HGNC=|MCL_coexpression_id=87|UniProt=Q3TZ87|association_with_transcript=0bp_to_ENSMUST00000040307,NM_001033262,uc007hhu.1_5end|description=CAGE_peak_1_at_March9_5end|id=chr10:126497219..126497262,-|ontology_enrichment_celltype=CL:0000540!1.99e-15!33;CL:0000047!1.99e-15!33;CL:0000031!1.99e-15!33;CL:0000404!1.99e-15!33;CL:0000117!2.29e-14!23;CL:0000337!2.29e-14!23;CL:0000221!9.15e-14!44;CL:0000133!9.15e-14!44;CL:0000393!1.11e-13!39;CL:0000211!1.11e-13!39;CL:0002319!2.14e-13!43;CL:0000055!2.18e-11!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.04e-15,33;CL:0000047,1.04e-15,33;CL:0000031,1.04e-15,33;CL:0000404,1.04e-15,33;CL:0000117,1.26e-14,23;CL:0000337,1.26e-14,23;CL:0000221,5.97e-14,44;CL:0000133,5.97e-14,44;CL:0000393,9.03e-14,39;CL:0000211,9.03e-14,39;CL:0002319,1.42e-13,43;CL:0002321,3.83e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.99e-31!73;UBERON:0005743!5.99e-31!73;UBERON:0000073!4.76e-29!75;UBERON:0001016!4.76e-29!75;UBERON:0004121!1.21e-27!102;UBERON:0000924!1.21e-27!102;UBERON:0006601!1.21e-27!102;UBERON:0001049!3.54e-25!52;UBERON:0005068!3.54e-25!52;UBERON:0006241!3.54e-25!52;UBERON:0007135!3.54e-25!52;UBERON:0002346!3.97e-25!71;UBERON:0003075!3.97e-25!71;UBERON:0007284!3.97e-25!71;UBERON:0000033!4.58e-24!63;UBERON:0000955!9.91e-24!50;UBERON:0006238!9.91e-24!50;UBERON:0002616!2.73e-23!49;UBERON:0003080!9.52e-21!40;UBERON:0002780!2.51e-20!39;UBERON:0001890!2.51e-20!39;UBERON:0006240!2.51e-20!39;UBERON:0003056!3.08e-20!49;UBERON:0002020!1.40e-18!34;UBERON:0002791!4.21e-15!29;UBERON:0003528!4.21e-15!29;UBERON:0001893!4.21e-15!29;UBERON:0000153!1.27e-12!94;UBERON:0007811!1.13e-11!86;UBERON:0000956!5.74e-11!21;UBERON:0001869!5.74e-11!21;UBERON:0000203!5.74e-11!21;UBERON:0002619!7.44e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.12e-32,73;UBERON:0001016,1.56e-29,75;UBERON:0004121,9.82e-28,95;UBERON:0000924,9.82e-28,95;UBERON:0006601,9.82e-28,95;UBERON:0000073,1.53e-27,54;UBERON:0002346,6.23e-26,64;UBERON:0003075,6.23e-26,64;UBERON:0007284,6.23e-26,64;UBERON:0001049,1.17e-25,52;UBERON:0005068,1.17e-25,52;UBERON:0006241,1.17e-25,52;UBERON:0007135,1.17e-25,52;UBERON:0010371,2.56e-23,73;UBERON:0000955,1.35e-22,47;UBERON:0006238,1.35e-22,47;UBERON:0002616,3.74e-22,46;UBERON:0003080,3.89e-21,40;UBERON:0002780,1.05e-20,39;UBERON:0001890,1.05e-20,39;UBERON:0006240,1.05e-20,39;UBERON:0003056,1.29e-20,49;UBERON:0002020,6.32e-19,34;UBERON:0003528,2.24e-15,29;UBERON:0002791,2.24e-15,29;UBERON:0001893,2.24e-15,29;UBERON:0010314,7.76e-15,92;UBERON:0000956,3.70e-11,21;UBERON:0001869,3.70e-11,21;UBERON:0000203,3.70e-11,21;UBERON:0002619,5.30e-09,17|phase1_expression=7.8472935081349,1.74487703819681,0.909998478779072,0,0,5.87577451691614,3.97141489012394,2.84071311571468,13.51571732656,17.0867104215055,1.02730780935303,1.03703806693937,0.856003649656029,2.27293046289393,0.666219523631325,0.607425802169478,0,0.315462165358238,0.959801035240171,1.69755860719212,4.08207792725135,0.992909512008853,1.30599894569468,1.43993180514066,1.37645568640302,1.14846392823004,1.7230479846363,0.646413698057667,0.380046838912748,0.504060259519861,1.99557459589774,0,2.46025915033828,0,1.1554064790051,3.15845826181135,2.45003227514843,0,0,0,0,0,0,5.41356317294982,6.18399280439039,2.9367480345869,5.47673941043627,1.96222640742402,5.27246838562732,4.86074747685709,1.95980990275508,0,2.68452169692378,3.62681071005672,4.7053131879945,0.771778308107841,1.14613375975503,1.54701627683233,31.1567349723781,31.2104677770499,27.8885817542719,1.35537812827653,2.66788438833342,0.449949858640699,2.96659908770092,0,9.28760342607055,12.6792040756113,12.1316846400919,15.5256829081444,15.5640471400023,28.8507494247842,24.7372765865807,15.4338407010842,12.172374819316,9.19218786610021,15.4162233399144,6.76742891851495,7.83393319606842,32.5759130693579,25.5250525650723,22.3992749339407,4.74611098302348,6.19038871034848,9.47349136216223,28.2843442054721,23.6336990126511,29.8239113320481,0.530083353332288,0.831287161174641,2.6087803983151,0,0,0,0.649776417447669,0,2.24711072210803,0.511290967734173,0.519572009205738,0.35333957451034,5.91542363062058,0,0,0,3.24736561516821,5.57391704045217,9.0994400102661,2.05530983494308,1.03575153458869,3.26572705942614,3.64319186208885,5.48037860961854,3.68984795609694,2.56228488939458,2.23418543557839,3.26733137457156,17.0564527736718,1.01219549843938,0,0.970601099684455,0.220841518460394,0,1.86391761218122,5.27005434620785,10.2628886338593,0.766371165625774,0.11981512450592,0,0,7.48953197024113,8.23501085073528,23.7486725493314,7.64827008846016,6.90431734791892,8.10373373782284,8.11206315338788,1.52759045775474,1.8661045591514,2.27450482590307,3.57751155007006,3.90361328888111,3.21862946206862,2.88099407688559,3.31550599238573,3.6739709541717,3.20284300712124,4.2165776051878,4.9153640440413,2.37124792226126,3.40390944302075,4.92663147659057,4.82230611340665,5.28289773528636,5.2237824978325,5.35033554660653,3.184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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:216438 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3TZ87 | |||
|association_with_transcript=0bp_to_ENSMUST00000040307,NM_001033262,uc007hhu.1_5end | |||
|cluster_id=chr10:126497219..126497262,- | |||
|description=CAGE_peak_1_at_March9_5end | |||
|id=chr10:126497219..126497262,- | |||
|ontology_enrichment_celltype=CL:0000540!1.99e-15!33;CL:0000047!1.99e-15!33;CL:0000031!1.99e-15!33;CL:0000404!1.99e-15!33;CL:0000117!2.29e-14!23;CL:0000337!2.29e-14!23;CL:0000221!9.15e-14!44;CL:0000133!9.15e-14!44;CL:0000393!1.11e-13!39;CL:0000211!1.11e-13!39;CL:0002319!2.14e-13!43;CL:0000055!2.18e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.04e-15,33;CL:0000047,1.04e-15,33;CL:0000031,1.04e-15,33;CL:0000404,1.04e-15,33;CL:0000117,1.26e-14,23;CL:0000337,1.26e-14,23;CL:0000221,5.97e-14,44;CL:0000133,5.97e-14,44;CL:0000393,9.03e-14,39;CL:0000211,9.03e-14,39;CL:0002319,1.42e-13,43;CL:0002321,3.83e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.99e-31!73;UBERON:0005743!5.99e-31!73;UBERON:0000073!4.76e-29!75;UBERON:0001016!4.76e-29!75;UBERON:0004121!1.21e-27!102;UBERON:0000924!1.21e-27!102;UBERON:0006601!1.21e-27!102;UBERON:0001049!3.54e-25!52;UBERON:0005068!3.54e-25!52;UBERON:0006241!3.54e-25!52;UBERON:0007135!3.54e-25!52;UBERON:0002346!3.97e-25!71;UBERON:0003075!3.97e-25!71;UBERON:0007284!3.97e-25!71;UBERON:0000033!4.58e-24!63;UBERON:0000955!9.91e-24!50;UBERON:0006238!9.91e-24!50;UBERON:0002616!2.73e-23!49;UBERON:0003080!9.52e-21!40;UBERON:0002780!2.51e-20!39;UBERON:0001890!2.51e-20!39;UBERON:0006240!2.51e-20!39;UBERON:0003056!3.08e-20!49;UBERON:0002020!1.40e-18!34;UBERON:0002791!4.21e-15!29;UBERON:0003528!4.21e-15!29;UBERON:0001893!4.21e-15!29;UBERON:0000153!1.27e-12!94;UBERON:0007811!1.13e-11!86;UBERON:0000956!5.74e-11!21;UBERON:0001869!5.74e-11!21;UBERON:0000203!5.74e-11!21;UBERON:0002619!7.44e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.12e-32,73;UBERON:0001016,1.56e-29,75;UBERON:0004121,9.82e-28,95;UBERON:0000924,9.82e-28,95;UBERON:0006601,9.82e-28,95;UBERON:0000073,1.53e-27,54;UBERON:0002346,6.23e-26,64;UBERON:0003075,6.23e-26,64;UBERON:0007284,6.23e-26,64;UBERON:0001049,1.17e-25,52;UBERON:0005068,1.17e-25,52;UBERON:0006241,1.17e-25,52;UBERON:0007135,1.17e-25,52;UBERON:0010371,2.56e-23,73;UBERON:0000955,1.35e-22,47;UBERON:0006238,1.35e-22,47;UBERON:0002616,3.74e-22,46;UBERON:0003080,3.89e-21,40;UBERON:0002780,1.05e-20,39;UBERON:0001890,1.05e-20,39;UBERON:0006240,1.05e-20,39;UBERON:0003056,1.29e-20,49;UBERON:0002020,6.32e-19,34;UBERON:0003528,2.24e-15,29;UBERON:0002791,2.24e-15,29;UBERON:0001893,2.24e-15,29;UBERON:0010314,7.76e-15,92;UBERON:0000956,3.70e-11,21;UBERON:0001869,3.70e-11,21;UBERON:0000203,3.70e-11,21;UBERON:0002619,5.30e-09,17 | |||
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| |||
|short_description=p1@March9 | |||
}} |
Revision as of 00:32, 4 August 2015
Short description: | p1@March9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_March9_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 0bp_to_ENSMUST00000040307, NM_001033262, uc007hhu.1_5end |
EntrezGene: | 216438 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.04e-15 | 33 |
neuronal stem cell | 1.04e-15 | 33 |
neuroblast | 1.04e-15 | 33 |
electrically signaling cell | 1.04e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.26e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.26e-14 | 23 |
ectodermal cell | 5.97e-14 | 44 |
neurectodermal cell | 5.97e-14 | 44 |
electrically responsive cell | 9.03e-14 | 39 |
electrically active cell | 9.03e-14 | 39 |
neural cell | 1.42e-13 | 43 |
embryonic cell | 3.83e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.12e-32 | 73 |
nervous system | 1.56e-29 | 75 |
ectoderm-derived structure | 9.82e-28 | 95 |
ectoderm | 9.82e-28 | 95 |
presumptive ectoderm | 9.82e-28 | 95 |
regional part of nervous system | 1.53e-27 | 54 |
neurectoderm | 6.23e-26 | 64 |
neural plate | 6.23e-26 | 64 |
presumptive neural plate | 6.23e-26 | 64 |
neural tube | 1.17e-25 | 52 |
neural rod | 1.17e-25 | 52 |
future spinal cord | 1.17e-25 | 52 |
neural keel | 1.17e-25 | 52 |
ecto-epithelium | 2.56e-23 | 73 |
brain | 1.35e-22 | 47 |
future brain | 1.35e-22 | 47 |
regional part of brain | 3.74e-22 | 46 |
anterior neural tube | 3.89e-21 | 40 |
regional part of forebrain | 1.05e-20 | 39 |
forebrain | 1.05e-20 | 39 |
future forebrain | 1.05e-20 | 39 |
pre-chordal neural plate | 1.29e-20 | 49 |
gray matter | 6.32e-19 | 34 |
brain grey matter | 2.24e-15 | 29 |
regional part of telencephalon | 2.24e-15 | 29 |
telencephalon | 2.24e-15 | 29 |
structure with developmental contribution from neural crest | 7.76e-15 | 92 |
cerebral cortex | 3.70e-11 | 21 |
cerebral hemisphere | 3.70e-11 | 21 |
pallium | 3.70e-11 | 21 |
regional part of cerebral cortex | 5.30e-09 | 17 |