FFCP PHASE1:Mm9::chr8:72963456..72963511,-: Difference between revisions
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{{FFCP|EntrezGene=382056|HGNC=|MCL_coexpression_id=1|UniProt=Q68ED7|association_with_transcript=0bp_to_ENSMUST00000076615,ENSMUST00000125613,ENSMUST00000142769,NM_001004062,uc009mae.1_5end|description=CAGE_peak_1_at_Crtc1_5end|id=chr8:72963456..72963511,-|ontology_enrichment_celltype=CL:0000117!2.00e-12!23;CL:0000337!2.00e-12!23;CL:0000221!3.53e-08!44;CL:0000133!3.53e-08!44;CL:0000540!4.22e-08!33;CL:0000047!4.22e-08!33;CL:0000031!4.22e-08!33;CL:0000404!4.22e-08!33;CL:0002319!6.21e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.00e-12,23;CL:0000337,2.00e-12,23;CL:0000221,3.53e-08,44;CL:0000133,3.53e-08,44;CL:0000540,4.21e-08,33;CL:0000047,4.21e-08,33;CL:0000031,4.21e-08,33;CL:0000404,4.21e-08,33;CL:0002319,6.21e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.31e-25!73;UBERON:0005743!1.31e-25!73;UBERON:0001049!2.48e-25!52;UBERON:0005068!2.48e-25!52;UBERON:0006241!2.48e-25!52;UBERON:0007135!2.48e-25!52;UBERON:0000073!2.42e-24!75;UBERON:0001016!2.42e-24!75;UBERON:0000955!2.76e-24!50;UBERON:0006238!2.76e-24!50;UBERON:0000033!5.69e-24!63;UBERON:0002616!1.37e-23!49;UBERON:0004121!1.03e-22!102;UBERON:0000924!1.03e-22!102;UBERON:0006601!1.03e-22!102;UBERON:0002346!5.48e-22!71;UBERON:0003075!5.48e-22!71;UBERON:0007284!5.48e-22!71;UBERON:0003080!1.46e-20!40;UBERON:0002780!5.23e-20!39;UBERON:0001890!5.23e-20!39;UBERON:0006240!5.23e-20!39;UBERON:0003056!5.49e-20!49;UBERON:0002020!4.40e-19!34;UBERON:0000153!2.79e-17!94;UBERON:0002791!3.24e-16!29;UBERON:0003528!3.24e-16!29;UBERON:0001893!3.24e-16!29;UBERON:0007811!2.20e-15!86;UBERON:0000956!7.53e-12!21;UBERON:0001869!7.53e-12!21;UBERON:0000203!7.53e-12!21;UBERON:0002619!8.34e-10!17;UBERON:0002021!8.75e-08!10;UBERON:0000411!8.75e-08!10;UBERON:0001950!8.75e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.06e-26,54;UBERON:0001017,1.30e-25,73;UBERON:0001049,2.47e-25,52;UBERON:0005068,2.47e-25,52;UBERON:0006241,2.47e-25,52;UBERON:0007135,2.47e-25,52;UBERON:0001016,2.41e-24,75;UBERON:0004121,8.44e-23,95;UBERON:0000924,8.44e-23,95;UBERON:0006601,8.44e-23,95;UBERON:0002346,1.21e-22,64;UBERON:0003075,1.21e-22,64;UBERON:0007284,1.21e-22,64;UBERON:0000955,1.66e-22,47;UBERON:0006238,1.66e-22,47;UBERON:0002616,8.04e-22,46;UBERON:0010371,9.59e-22,73;UBERON:0003080,1.46e-20,40;UBERON:0002780,5.21e-20,39;UBERON:0001890,5.21e-20,39;UBERON:0006240,5.21e-20,39;UBERON:0003056,5.47e-20,49;UBERON:0002020,4.39e-19,34;UBERON:0003528,3.23e-16,29;UBERON:0002791,3.23e-16,29;UBERON:0001893,3.23e-16,29;UBERON:0010314,5.10e-16,92;UBERON:0000956,7.52e-12,21;UBERON:0001869,7.52e-12,21;UBERON:0000203,7.52e-12,21;UBERON:0002619,8.33e-10,17;UBERON:0002021,8.74e-08,10;UBERON:0000411,8.74e-08,10;UBERON:0001950,8.74e-08,10|phase1_expression=10.2495262147068,1.04692622291808,0.454999239389536,0.60492842261366,1.50268718983904,4.02910252588535,1.63528848416868,4.51931632045517,10.98152032783,10.0647746318457,7.87602653837323,9.25357044345902,2.22560948910567,2.88487327982691,3.33109761815663,1.41732687172878,2.79824751251259,2.68142840554502,3.97631857456642,1.69755860719212,14.627445905984,4.96454756004426,3.6567970479451,1.43993180514066,1.37645568640302,2.8711598205751,0.86152399231815,1.50829862880122,0.380046838912748,1.76421090831952,1.55211357458713,8.25539875497521,8.61090702618398,0,3.75507105676657,2.49351968037739,3.06254034393554,0.837063261473815,0,0,1.76469446409304,2.04913645487534,0.485510353031154,2.51793635951155,2.43304634926835,3.85448179539531,14.8654355426127,3.05235218932625,7.90870257844099,6.61061656852564,5.5994568650145,8.62515386189829,4.19456515144341,2.17608642603403,4.36921938885203,2.57259436035947,3.72493471920384,4.12537673821954,23.0640765379941,22.7466121086974,19.0149421051854,7.11573517345177,5.33576877666684,3.5995988691256,4.94433181283487,6.3943210345149,8.98800331555214,17.6740420447915,16.9014068062819,17.1457541681247,17.0363218694619,20.2812198926701,20.0990372265968,15.6788222995141,23.4821403994679,8.27296907949019,19.82085857989,27.197403012145,20.7368819895929,24.0033043668953,37.1439833025783,25.5247551572812,14.7966989470732,10.6924895906019,23.2253336620751,25.9273155216828,29.4709379254143,24.2319279572891,3.86203585999239,3.92972112555285,1.73918693221007,1.72084775396277,0,1.61910957491345,2.59910566979068,2.24013443548668,4.49422144421606,6.81721290312231,3.11743205523443,2.47337702157238,9.15482228548423,3.84979432242953,2.54805239706646,7.11066703153331,1.73192832808971,1.26679932737549,1.01104889002957,4.22480354960522,5.43769555659061,8.46120192669501,8.84775166507293,4.87144765299426,5.07354093963329,5.27529241934179,6.70255630673517,6.40899615781345,2.47194967734374,4.33798070759735,0.884610551949874,5.01477234836968,3.3126227769059,3.87900202508178,1.86391761218122,28.9852989041432,43.5649150171987,2.04365644166873,2.87556298814209,2.99951365496704,2.54140454146129,20.6711082378655,37.972550033946,39.832429619778,54.9284851807594,44.7502050328078,17.0386196538839,24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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:382056 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q68ED7 | |||
|association_with_transcript=0bp_to_ENSMUST00000076615,ENSMUST00000125613,ENSMUST00000142769,NM_001004062,uc009mae.1_5end | |||
|cluster_id=chr8:72963456..72963511,- | |||
|description=CAGE_peak_1_at_Crtc1_5end | |||
|id=chr8:72963456..72963511,- | |||
|ontology_enrichment_celltype=CL:0000117!2.00e-12!23;CL:0000337!2.00e-12!23;CL:0000221!3.53e-08!44;CL:0000133!3.53e-08!44;CL:0000540!4.22e-08!33;CL:0000047!4.22e-08!33;CL:0000031!4.22e-08!33;CL:0000404!4.22e-08!33;CL:0002319!6.21e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.00e-12,23;CL:0000337,2.00e-12,23;CL:0000221,3.53e-08,44;CL:0000133,3.53e-08,44;CL:0000540,4.21e-08,33;CL:0000047,4.21e-08,33;CL:0000031,4.21e-08,33;CL:0000404,4.21e-08,33;CL:0002319,6.21e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.31e-25!73;UBERON:0005743!1.31e-25!73;UBERON:0001049!2.48e-25!52;UBERON:0005068!2.48e-25!52;UBERON:0006241!2.48e-25!52;UBERON:0007135!2.48e-25!52;UBERON:0000073!2.42e-24!75;UBERON:0001016!2.42e-24!75;UBERON:0000955!2.76e-24!50;UBERON:0006238!2.76e-24!50;UBERON:0000033!5.69e-24!63;UBERON:0002616!1.37e-23!49;UBERON:0004121!1.03e-22!102;UBERON:0000924!1.03e-22!102;UBERON:0006601!1.03e-22!102;UBERON:0002346!5.48e-22!71;UBERON:0003075!5.48e-22!71;UBERON:0007284!5.48e-22!71;UBERON:0003080!1.46e-20!40;UBERON:0002780!5.23e-20!39;UBERON:0001890!5.23e-20!39;UBERON:0006240!5.23e-20!39;UBERON:0003056!5.49e-20!49;UBERON:0002020!4.40e-19!34;UBERON:0000153!2.79e-17!94;UBERON:0002791!3.24e-16!29;UBERON:0003528!3.24e-16!29;UBERON:0001893!3.24e-16!29;UBERON:0007811!2.20e-15!86;UBERON:0000956!7.53e-12!21;UBERON:0001869!7.53e-12!21;UBERON:0000203!7.53e-12!21;UBERON:0002619!8.34e-10!17;UBERON:0002021!8.75e-08!10;UBERON:0000411!8.75e-08!10;UBERON:0001950!8.75e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.06e-26,54;UBERON:0001017,1.30e-25,73;UBERON:0001049,2.47e-25,52;UBERON:0005068,2.47e-25,52;UBERON:0006241,2.47e-25,52;UBERON:0007135,2.47e-25,52;UBERON:0001016,2.41e-24,75;UBERON:0004121,8.44e-23,95;UBERON:0000924,8.44e-23,95;UBERON:0006601,8.44e-23,95;UBERON:0002346,1.21e-22,64;UBERON:0003075,1.21e-22,64;UBERON:0007284,1.21e-22,64;UBERON:0000955,1.66e-22,47;UBERON:0006238,1.66e-22,47;UBERON:0002616,8.04e-22,46;UBERON:0010371,9.59e-22,73;UBERON:0003080,1.46e-20,40;UBERON:0002780,5.21e-20,39;UBERON:0001890,5.21e-20,39;UBERON:0006240,5.21e-20,39;UBERON:0003056,5.47e-20,49;UBERON:0002020,4.39e-19,34;UBERON:0003528,3.23e-16,29;UBERON:0002791,3.23e-16,29;UBERON:0001893,3.23e-16,29;UBERON:0010314,5.10e-16,92;UBERON:0000956,7.52e-12,21;UBERON:0001869,7.52e-12,21;UBERON:0000203,7.52e-12,21;UBERON:0002619,8.33e-10,17;UBERON:0002021,8.74e-08,10;UBERON:0000411,8.74e-08,10;UBERON:0001950,8.74e-08,10 | |||
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| |||
|short_description=p1@Crtc1 | |||
}} |
Revision as of 00:47, 4 August 2015
Short description: | p1@Crtc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Crtc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000076615, ENSMUST00000125613, ENSMUST00000142769, NM_001004062, uc009mae.1_5end |
EntrezGene: | 382056 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.00e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.00e-12 | 23 |
ectodermal cell | 3.53e-08 | 44 |
neurectodermal cell | 3.53e-08 | 44 |
neuron | 4.21e-08 | 33 |
neuronal stem cell | 4.21e-08 | 33 |
neuroblast | 4.21e-08 | 33 |
electrically signaling cell | 4.21e-08 | 33 |
neural cell | 6.21e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.06e-26 | 54 |
central nervous system | 1.30e-25 | 73 |
neural tube | 2.47e-25 | 52 |
neural rod | 2.47e-25 | 52 |
future spinal cord | 2.47e-25 | 52 |
neural keel | 2.47e-25 | 52 |
nervous system | 2.41e-24 | 75 |
ectoderm-derived structure | 8.44e-23 | 95 |
ectoderm | 8.44e-23 | 95 |
presumptive ectoderm | 8.44e-23 | 95 |
neurectoderm | 1.21e-22 | 64 |
neural plate | 1.21e-22 | 64 |
presumptive neural plate | 1.21e-22 | 64 |
brain | 1.66e-22 | 47 |
future brain | 1.66e-22 | 47 |
regional part of brain | 8.04e-22 | 46 |
ecto-epithelium | 9.59e-22 | 73 |
anterior neural tube | 1.46e-20 | 40 |
regional part of forebrain | 5.21e-20 | 39 |
forebrain | 5.21e-20 | 39 |
future forebrain | 5.21e-20 | 39 |
pre-chordal neural plate | 5.47e-20 | 49 |
gray matter | 4.39e-19 | 34 |
brain grey matter | 3.23e-16 | 29 |
regional part of telencephalon | 3.23e-16 | 29 |
telencephalon | 3.23e-16 | 29 |
structure with developmental contribution from neural crest | 5.10e-16 | 92 |
cerebral cortex | 7.52e-12 | 21 |
cerebral hemisphere | 7.52e-12 | 21 |
pallium | 7.52e-12 | 21 |
regional part of cerebral cortex | 8.33e-10 | 17 |
occipital lobe | 8.74e-08 | 10 |
visual cortex | 8.74e-08 | 10 |
neocortex | 8.74e-08 | 10 |