FFCP PHASE1:Mm9::chr3:82162055..82162087,+: Difference between revisions
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{{FFCP|EntrezGene=213582|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=-21bp_to_uc008poz.1_5end|description=CAGE_peak_1_at_Mtap9_5end|id=chr3:82162055..82162087,+|ontology_enrichment_celltype=CL:0000540!7.43e-12!33;CL:0000047!7.43e-12!33;CL:0000031!7.43e-12!33;CL:0000404!7.43e-12!33;CL:0000117!3.16e-11!23;CL:0000337!3.16e-11!23;CL:0000221!7.24e-10!44;CL:0000133!7.24e-10!44;CL:0000393!7.99e-10!39;CL:0000211!7.99e-10!39;CL:0002319!1.31e-09!43;CL:0000055!5.74e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.95e-12,33;CL:0000047,1.95e-12,33;CL:0000031,1.95e-12,33;CL:0000404,1.95e-12,33;CL:0000117,8.97e-12,23;CL:0000337,8.97e-12,23;CL:0000221,2.48e-10,44;CL:0000133,2.48e-10,44;CL:0002319,4.63e-10,43;CL:0000393,6.87e-10,39;CL:0000211,6.87e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.13e-27!73;UBERON:0005743!1.13e-27!73;UBERON:0000073!2.23e-27!75;UBERON:0001016!2.23e-27!75;UBERON:0002346!5.25e-26!71;UBERON:0003075!5.25e-26!71;UBERON:0007284!5.25e-26!71;UBERON:0004121!6.08e-26!102;UBERON:0000924!6.08e-26!102;UBERON:0006601!6.08e-26!102;UBERON:0000033!2.52e-24!63;UBERON:0001049!1.29e-23!52;UBERON:0005068!1.29e-23!52;UBERON:0006241!1.29e-23!52;UBERON:0007135!1.29e-23!52;UBERON:0000955!7.52e-23!50;UBERON:0006238!7.52e-23!50;UBERON:0002616!3.48e-22!49;UBERON:0003056!4.30e-22!49;UBERON:0003080!9.18e-20!40;UBERON:0002780!3.75e-19!39;UBERON:0001890!3.75e-19!39;UBERON:0006240!3.75e-19!39;UBERON:0002020!7.70e-18!34;UBERON:0002791!1.50e-15!29;UBERON:0003528!1.50e-15!29;UBERON:0001893!1.50e-15!29;UBERON:0007811!8.15e-12!86;UBERON:0000153!1.17e-11!94;UBERON:0000956!2.92e-11!21;UBERON:0001869!2.92e-11!21;UBERON:0000203!2.92e-11!21;UBERON:0002619!1.62e-09!17;UBERON:0002021!4.70e-08!10;UBERON:0000411!4.70e-08!10;UBERON:0001950!4.70e-08!10;UBERON:0000025!2.80e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.79e-29,73;UBERON:0001016,7.76e-29,75;UBERON:0002346,4.65e-28,64;UBERON:0003075,4.65e-28,64;UBERON:0007284,4.65e-28,64;UBERON:0004121,1.90e-26,95;UBERON:0000924,1.90e-26,95;UBERON:0006601,1.90e-26,95;UBERON:0000073,5.16e-26,54;UBERON:0001049,7.34e-25,52;UBERON:0005068,7.34e-25,52;UBERON:0006241,7.34e-25,52;UBERON:0007135,7.34e-25,52;UBERON:0010371,9.57e-25,73;UBERON:0003056,5.52e-23,49;UBERON:0000955,2.87e-22,47;UBERON:0006238,2.87e-22,47;UBERON:0002616,1.41e-21,46;UBERON:0010314,2.21e-21,92;UBERON:0003080,1.63e-20,40;UBERON:0002780,7.18e-20,39;UBERON:0001890,7.18e-20,39;UBERON:0006240,7.18e-20,39;UBERON:0002020,1.78e-18,34;UBERON:0003528,4.67e-16,29;UBERON:0002791,4.67e-16,29;UBERON:0001893,4.67e-16,29;UBERON:0000956,1.56e-11,21;UBERON:0001869,1.56e-11,21;UBERON:0000203,1.56e-11,21;UBERON:0002619,1.09e-09,17;UBERON:0002021,2.01e-08,10;UBERON:0000411,2.01e-08,10;UBERON:0001950,2.01e-08,10;UBERON:0000025,1.63e-07,114|phase1_expression=4.96461426024861,0.348975407639361,0,0,0,0,0,0.129123323441576,0.140788722151667,0.234064526321993,0.68487187290202,1.35612670292072,0,0.174840804837995,0,0,0,0.315462165358238,0.137114433605739,0.42438965179803,5.18764069921526,0,0,0.639969691173627,0.22940928106717,0,0.430761996159075,0.861884930743556,0,0,0.665191531965914,0,0,0,0,0,0,0,0,0,0,0,0,2.51793635951155,1.72340783073175,2.0190142737785,0,1.96222640742402,0.659058548203415,3.11087838518853,1.1198913730029,2.87505128729943,0,0.725362142011344,0,0.771778308107841,0.286533439938757,0.515672092277442,9.71119012126069,6.87688273053643,5.70448263155561,0.677689064138264,1.77858959222228,0,0,0,2.09720077362883,1.15265491596466,8.60623782160365,5.8052553482627,7.57169860864975,3.99911378165325,6.18431914664518,12.9840247167851,8.81778333367775,4.5960939330501,7.70811166995721,13.2794831608595,13.2101618600369,9.49581271657396,14.4550476891807,17.7110545989298,5.58365998002762,10.1297269805702,12.071061574368,23.8649154233671,18.3659468230843,12.1159639786445,1.74170244666323,1.81371744256285,1.15945795480671,0.860423876981386,0,0,0,0.448026887097336,2.80888840263504,1.87473354835864,1.29893002301434,0.70667914902068,4.92951969218382,0,2.54805239706646,0,0,0.253359865475099,0,1.37020655662872,0.776813650941515,1.7813056687779,1.38788261412909,2.13125834818499,2.07553947530453,3.16517545160507,3.41007250693544,1.38233250462643,0.247194967734374,1.44599356919912,0.884610551949874,0.808834249737046,0.662524555381181,0.484875253135222,0,10.5401086924157,8.79676168616511,0,0.11981512450592,0,0.127070227073065,16.027598416316,26.5350349634803,39.4554665634394,25.2045264278801,23.5258220743904,22.8566849015516,18.8199865158599,1.2220723662038,1.49288364732112,3.0326731012041,5.89237196482127,2.99277018814219,1.60931473103431,4.50155324513373,6.48030716693575,5.51095643125756,6.14945857367279,6.1843138209421,9.8307280880826,1.94011193639558,2.26927296201383,2.28736461413134,1.31517439456545,1.66828349535359,2.089512999133,2.05782136407943,0.796137067273973,0,0,0,2.07125772535502,1.64168241986767,1.80062061461015,2.13070262026689,2.16440654922144,1.8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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:213582 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-21bp_to_uc008poz.1_5end | |||
|cluster_id=chr3:82162055..82162087,+ | |||
|description=CAGE_peak_1_at_Mtap9_5end | |||
|id=chr3:82162055..82162087,+ | |||
|ontology_enrichment_celltype=CL:0000540!7.43e-12!33;CL:0000047!7.43e-12!33;CL:0000031!7.43e-12!33;CL:0000404!7.43e-12!33;CL:0000117!3.16e-11!23;CL:0000337!3.16e-11!23;CL:0000221!7.24e-10!44;CL:0000133!7.24e-10!44;CL:0000393!7.99e-10!39;CL:0000211!7.99e-10!39;CL:0002319!1.31e-09!43;CL:0000055!5.74e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.95e-12,33;CL:0000047,1.95e-12,33;CL:0000031,1.95e-12,33;CL:0000404,1.95e-12,33;CL:0000117,8.97e-12,23;CL:0000337,8.97e-12,23;CL:0000221,2.48e-10,44;CL:0000133,2.48e-10,44;CL:0002319,4.63e-10,43;CL:0000393,6.87e-10,39;CL:0000211,6.87e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.13e-27!73;UBERON:0005743!1.13e-27!73;UBERON:0000073!2.23e-27!75;UBERON:0001016!2.23e-27!75;UBERON:0002346!5.25e-26!71;UBERON:0003075!5.25e-26!71;UBERON:0007284!5.25e-26!71;UBERON:0004121!6.08e-26!102;UBERON:0000924!6.08e-26!102;UBERON:0006601!6.08e-26!102;UBERON:0000033!2.52e-24!63;UBERON:0001049!1.29e-23!52;UBERON:0005068!1.29e-23!52;UBERON:0006241!1.29e-23!52;UBERON:0007135!1.29e-23!52;UBERON:0000955!7.52e-23!50;UBERON:0006238!7.52e-23!50;UBERON:0002616!3.48e-22!49;UBERON:0003056!4.30e-22!49;UBERON:0003080!9.18e-20!40;UBERON:0002780!3.75e-19!39;UBERON:0001890!3.75e-19!39;UBERON:0006240!3.75e-19!39;UBERON:0002020!7.70e-18!34;UBERON:0002791!1.50e-15!29;UBERON:0003528!1.50e-15!29;UBERON:0001893!1.50e-15!29;UBERON:0007811!8.15e-12!86;UBERON:0000153!1.17e-11!94;UBERON:0000956!2.92e-11!21;UBERON:0001869!2.92e-11!21;UBERON:0000203!2.92e-11!21;UBERON:0002619!1.62e-09!17;UBERON:0002021!4.70e-08!10;UBERON:0000411!4.70e-08!10;UBERON:0001950!4.70e-08!10;UBERON:0000025!2.80e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.79e-29,73;UBERON:0001016,7.76e-29,75;UBERON:0002346,4.65e-28,64;UBERON:0003075,4.65e-28,64;UBERON:0007284,4.65e-28,64;UBERON:0004121,1.90e-26,95;UBERON:0000924,1.90e-26,95;UBERON:0006601,1.90e-26,95;UBERON:0000073,5.16e-26,54;UBERON:0001049,7.34e-25,52;UBERON:0005068,7.34e-25,52;UBERON:0006241,7.34e-25,52;UBERON:0007135,7.34e-25,52;UBERON:0010371,9.57e-25,73;UBERON:0003056,5.52e-23,49;UBERON:0000955,2.87e-22,47;UBERON:0006238,2.87e-22,47;UBERON:0002616,1.41e-21,46;UBERON:0010314,2.21e-21,92;UBERON:0003080,1.63e-20,40;UBERON:0002780,7.18e-20,39;UBERON:0001890,7.18e-20,39;UBERON:0006240,7.18e-20,39;UBERON:0002020,1.78e-18,34;UBERON:0003528,4.67e-16,29;UBERON:0002791,4.67e-16,29;UBERON:0001893,4.67e-16,29;UBERON:0000956,1.56e-11,21;UBERON:0001869,1.56e-11,21;UBERON:0000203,1.56e-11,21;UBERON:0002619,1.09e-09,17;UBERON:0002021,2.01e-08,10;UBERON:0000411,2.01e-08,10;UBERON:0001950,2.01e-08,10;UBERON:0000025,1.63e-07,114 | |||
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| |||
|short_description=p1@Mtap9 | |||
}} |
Revision as of 01:27, 4 August 2015
Short description: | p1@Mtap9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mtap9_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -21bp_to_uc008poz.1_5end |
EntrezGene: | 213582 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.95e-12 | 33 |
neuronal stem cell | 1.95e-12 | 33 |
neuroblast | 1.95e-12 | 33 |
electrically signaling cell | 1.95e-12 | 33 |
CNS neuron (sensu Vertebrata) | 8.97e-12 | 23 |
neuroblast (sensu Vertebrata) | 8.97e-12 | 23 |
ectodermal cell | 2.48e-10 | 44 |
neurectodermal cell | 2.48e-10 | 44 |
neural cell | 4.63e-10 | 43 |
electrically responsive cell | 6.87e-10 | 39 |
electrically active cell | 6.87e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.79e-29 | 73 |
nervous system | 7.76e-29 | 75 |
neurectoderm | 4.65e-28 | 64 |
neural plate | 4.65e-28 | 64 |
presumptive neural plate | 4.65e-28 | 64 |
ectoderm-derived structure | 1.90e-26 | 95 |
ectoderm | 1.90e-26 | 95 |
presumptive ectoderm | 1.90e-26 | 95 |
regional part of nervous system | 5.16e-26 | 54 |
neural tube | 7.34e-25 | 52 |
neural rod | 7.34e-25 | 52 |
future spinal cord | 7.34e-25 | 52 |
neural keel | 7.34e-25 | 52 |
ecto-epithelium | 9.57e-25 | 73 |
pre-chordal neural plate | 5.52e-23 | 49 |
brain | 2.87e-22 | 47 |
future brain | 2.87e-22 | 47 |
regional part of brain | 1.41e-21 | 46 |
structure with developmental contribution from neural crest | 2.21e-21 | 92 |
anterior neural tube | 1.63e-20 | 40 |
regional part of forebrain | 7.18e-20 | 39 |
forebrain | 7.18e-20 | 39 |
future forebrain | 7.18e-20 | 39 |
gray matter | 1.78e-18 | 34 |
brain grey matter | 4.67e-16 | 29 |
regional part of telencephalon | 4.67e-16 | 29 |
telencephalon | 4.67e-16 | 29 |
cerebral cortex | 1.56e-11 | 21 |
cerebral hemisphere | 1.56e-11 | 21 |
pallium | 1.56e-11 | 21 |
regional part of cerebral cortex | 1.09e-09 | 17 |
occipital lobe | 2.01e-08 | 10 |
visual cortex | 2.01e-08 | 10 |
neocortex | 2.01e-08 | 10 |
tube | 1.63e-07 | 114 |