FFCP PHASE1:Mm9::chr2:130867213..130867290,-: Difference between revisions
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{{FFCP|EntrezGene=14588|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=0bp_to_ENSMUST00000136569_5end|description=CAGE_peak_1_at_Gfra4_5end|id=chr2:130867213..130867290,-|ontology_enrichment_celltype=CL:0000117!2.15e-13!23;CL:0000337!2.15e-13!23;CL:0000540!4.72e-10!33;CL:0000047!4.72e-10!33;CL:0000031!4.72e-10!33;CL:0000404!4.72e-10!33;CL:0000393!6.03e-09!39;CL:0000211!6.03e-09!39;CL:0002319!1.52e-08!43;CL:0000221!3.92e-08!44;CL:0000133!3.92e-08!44;CL:0000055!2.88e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,2.74e-14,23;CL:0000337,2.74e-14,23;CL:0000540,5.17e-10,33;CL:0000047,5.17e-10,33;CL:0000031,5.17e-10,33;CL:0000404,5.17e-10,33;CL:0000393,1.86e-08,39;CL:0000211,1.86e-08,39;CL:0002319,4.17e-08,43;CL:0000221,1.36e-07,44;CL:0000133,1.36e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.36e-24!73;UBERON:0005743!2.36e-24!73;UBERON:0000073!2.97e-23!75;UBERON:0001016!2.97e-23!75;UBERON:0001049!6.57e-22!52;UBERON:0005068!6.57e-22!52;UBERON:0006241!6.57e-22!52;UBERON:0007135!6.57e-22!52;UBERON:0000955!9.98e-21!50;UBERON:0006238!9.98e-21!50;UBERON:0002346!3.87e-20!71;UBERON:0003075!3.87e-20!71;UBERON:0007284!3.87e-20!71;UBERON:0002616!4.35e-20!49;UBERON:0004121!6.15e-19!102;UBERON:0000924!6.15e-19!102;UBERON:0006601!6.15e-19!102;UBERON:0000033!9.29e-19!63;UBERON:0002020!1.57e-17!34;UBERON:0003056!8.64e-17!49;UBERON:0003080!1.19e-16!40;UBERON:0002780!4.38e-16!39;UBERON:0001890!4.38e-16!39;UBERON:0006240!4.38e-16!39;UBERON:0002791!2.05e-14!29;UBERON:0003528!2.05e-14!29;UBERON:0001893!2.05e-14!29;UBERON:0000956!5.73e-10!21;UBERON:0001869!5.73e-10!21;UBERON:0000203!5.73e-10!21;UBERON:0000153!7.32e-09!94;UBERON:0002619!3.76e-08!17;UBERON:0002021!8.83e-08!10;UBERON:0000411!8.83e-08!10;UBERON:0001950!8.83e-08!10;UBERON:0007811!9.54e-08!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.56e-25,73;UBERON:0000073,6.67e-25,54;UBERON:0001016,1.56e-23,75;UBERON:0001049,2.46e-23,52;UBERON:0005068,2.46e-23,52;UBERON:0006241,2.46e-23,52;UBERON:0007135,2.46e-23,52;UBERON:0002346,2.29e-22,64;UBERON:0003075,2.29e-22,64;UBERON:0007284,2.29e-22,64;UBERON:0000955,6.22e-20,47;UBERON:0006238,6.22e-20,47;UBERON:0002616,2.92e-19,46;UBERON:0002020,2.48e-18,34;UBERON:0004121,6.31e-18,95;UBERON:0000924,6.31e-18,95;UBERON:0006601,6.31e-18,95;UBERON:0003056,1.33e-17,49;UBERON:0003080,2.01e-17,40;UBERON:0010371,3.43e-17,73;UBERON:0002780,8.08e-17,39;UBERON:0001890,8.08e-17,39;UBERON:0006240,8.08e-17,39;UBERON:0003528,5.41e-15,29;UBERON:0002791,5.41e-15,29;UBERON:0001893,5.41e-15,29;UBERON:0010314,7.68e-13,92;UBERON:0000956,3.11e-10,21;UBERON:0001869,3.11e-10,21;UBERON:0000203,3.11e-10,21;UBERON:0002619,2.74e-08,17;UBERON:0002021,2.98e-08,10;UBERON:0000411,2.98e-08,10;UBERON:0001950,2.98e-08,10|phase1_expression=2.7225304007815,0.348975407639361,0,0,0,0,0,0.129123323441576,0,0.234064526321993,0,0,0,0,0.333109761815663,0.404950534779652,0.699561878128147,0,0,0,4.67738095830884,0.0992909512008853,0,0,0,0,0,0,0,0,0,5.08024538767705,4.30545351309199,15.8481681015439,0,0,0,0,0.7813353445238,0,0,0,0,1.51076181570693,0.912392380975631,1.46837401729345,17.9950009200049,0,0.219686182734472,0.777719596297134,3.77963338388479,1.43752564364972,0,0,0,0.514518872071894,4.01146815914259,2.57836046138721,13.7575193384526,23.2756030879694,18.3811107016792,11.8595586224196,7.11435836888911,3.5995988691256,4.94433181283487,4.9733608046227,8.68840320503374,6.14749288514487,8.19147937236973,10.1254453748768,10.0955981448663,29.4220513935918,23.1911967999194,8.69684674426174,5.46319184803947,12.8690630125403,29.731287869835,21.9622221506523,25.8058975870489,16.4857859662742,13.2657083223494,12.5019208933622,30.4309468911505,29.2636557216474,22.4613424231911,25.6326869362091,23.3489556510529,19.7583412574819,0.37863096666592,0.831287161174641,0.289864488701678,0,0,0,0,0,1.54488862144927,1.87473354835864,0.779358013808606,0,0.422530259330042,0,0,0,1.08245520505607,0.506719730950197,2.52762222507392,0.79928715803342,0,2.22663208597237,1.90833859442749,2.74018930480927,1.84492397804847,2.11011696773672,1.52865319276416,1.38233250462643,0.494389935468748,1.87979163995885,0,1.45590164952668,0.662524555381181,0.484875253135222,0,12.0040126774734,8.79676168616511,1.02182822083437,0.11981512450592,0,0,20.3715269590559,24.7050325522058,15.3298309577695,23.4662832259573,24.8043993610421,26.1812936145046,18.6577452527921,3.46253837091075,1.61729061793121,4.80173241023982,1.89397670297827,3.6433724029557,2.75882525320168,2.88099407688559,2.41127708537144,1.90502197623718,3.07472928683639,4.2165776051878,5.69147415625834,2.37124792226126,4.72765200419548,7.2139960907219,11.3981780862339,6.39508673218875,3.1342694986995,4.52720700097476,5.17489093728082,0,0,0,1.03562886267751,0.703578179943289,0.720248245844059,0.23674473558521,0.983821158737019,0.308534225774757,0,0.536546802799238,0,0.822799249567402,0.492502392237286,0.486412857275134,2.33919979880532,1.75640092232841,2.2815091189263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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14588 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000136569_5end | |||
|cluster_id=chr2:130867213..130867290,- | |||
|description=CAGE_peak_1_at_Gfra4_5end | |||
|id=chr2:130867213..130867290,- | |||
|ontology_enrichment_celltype=CL:0000117!2.15e-13!23;CL:0000337!2.15e-13!23;CL:0000540!4.72e-10!33;CL:0000047!4.72e-10!33;CL:0000031!4.72e-10!33;CL:0000404!4.72e-10!33;CL:0000393!6.03e-09!39;CL:0000211!6.03e-09!39;CL:0002319!1.52e-08!43;CL:0000221!3.92e-08!44;CL:0000133!3.92e-08!44;CL:0000055!2.88e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.74e-14,23;CL:0000337,2.74e-14,23;CL:0000540,5.17e-10,33;CL:0000047,5.17e-10,33;CL:0000031,5.17e-10,33;CL:0000404,5.17e-10,33;CL:0000393,1.86e-08,39;CL:0000211,1.86e-08,39;CL:0002319,4.17e-08,43;CL:0000221,1.36e-07,44;CL:0000133,1.36e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.36e-24!73;UBERON:0005743!2.36e-24!73;UBERON:0000073!2.97e-23!75;UBERON:0001016!2.97e-23!75;UBERON:0001049!6.57e-22!52;UBERON:0005068!6.57e-22!52;UBERON:0006241!6.57e-22!52;UBERON:0007135!6.57e-22!52;UBERON:0000955!9.98e-21!50;UBERON:0006238!9.98e-21!50;UBERON:0002346!3.87e-20!71;UBERON:0003075!3.87e-20!71;UBERON:0007284!3.87e-20!71;UBERON:0002616!4.35e-20!49;UBERON:0004121!6.15e-19!102;UBERON:0000924!6.15e-19!102;UBERON:0006601!6.15e-19!102;UBERON:0000033!9.29e-19!63;UBERON:0002020!1.57e-17!34;UBERON:0003056!8.64e-17!49;UBERON:0003080!1.19e-16!40;UBERON:0002780!4.38e-16!39;UBERON:0001890!4.38e-16!39;UBERON:0006240!4.38e-16!39;UBERON:0002791!2.05e-14!29;UBERON:0003528!2.05e-14!29;UBERON:0001893!2.05e-14!29;UBERON:0000956!5.73e-10!21;UBERON:0001869!5.73e-10!21;UBERON:0000203!5.73e-10!21;UBERON:0000153!7.32e-09!94;UBERON:0002619!3.76e-08!17;UBERON:0002021!8.83e-08!10;UBERON:0000411!8.83e-08!10;UBERON:0001950!8.83e-08!10;UBERON:0007811!9.54e-08!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.56e-25,73;UBERON:0000073,6.67e-25,54;UBERON:0001016,1.56e-23,75;UBERON:0001049,2.46e-23,52;UBERON:0005068,2.46e-23,52;UBERON:0006241,2.46e-23,52;UBERON:0007135,2.46e-23,52;UBERON:0002346,2.29e-22,64;UBERON:0003075,2.29e-22,64;UBERON:0007284,2.29e-22,64;UBERON:0000955,6.22e-20,47;UBERON:0006238,6.22e-20,47;UBERON:0002616,2.92e-19,46;UBERON:0002020,2.48e-18,34;UBERON:0004121,6.31e-18,95;UBERON:0000924,6.31e-18,95;UBERON:0006601,6.31e-18,95;UBERON:0003056,1.33e-17,49;UBERON:0003080,2.01e-17,40;UBERON:0010371,3.43e-17,73;UBERON:0002780,8.08e-17,39;UBERON:0001890,8.08e-17,39;UBERON:0006240,8.08e-17,39;UBERON:0003528,5.41e-15,29;UBERON:0002791,5.41e-15,29;UBERON:0001893,5.41e-15,29;UBERON:0010314,7.68e-13,92;UBERON:0000956,3.11e-10,21;UBERON:0001869,3.11e-10,21;UBERON:0000203,3.11e-10,21;UBERON:0002619,2.74e-08,17;UBERON:0002021,2.98e-08,10;UBERON:0000411,2.98e-08,10;UBERON:0001950,2.98e-08,10 | |||
|phase1_expression=2.7225304007815,0.348975407639361,0,0,0,0,0,0.129123323441576,0,0.234064526321993,0,0,0,0,0.333109761815663,0.404950534779652,0.699561878128147,0,0,0,4.67738095830884,0.0992909512008853,0,0,0,0,0,0,0,0,0,5.08024538767705,4.30545351309199,15.8481681015439,0,0,0,0,0.7813353445238,0,0,0,0,1.51076181570693,0.912392380975631,1.46837401729345,17.9950009200049,0,0.219686182734472,0.777719596297134,3.77963338388479,1.43752564364972,0,0,0,0.514518872071894,4.01146815914259,2.57836046138721,13.7575193384526,23.2756030879694,18.3811107016792,11.8595586224196,7.11435836888911,3.5995988691256,4.94433181283487,4.9733608046227,8.68840320503374,6.14749288514487,8.19147937236973,10.1254453748768,10.0955981448663,29.4220513935918,23.1911967999194,8.69684674426174,5.46319184803947,12.8690630125403,29.731287869835,21.9622221506523,25.8058975870489,16.4857859662742,13.2657083223494,12.5019208933622,30.4309468911505,29.2636557216474,22.4613424231911,25.6326869362091,23.3489556510529,19.7583412574819,0.37863096666592,0.831287161174641,0.289864488701678,0,0,0,0,0,1.54488862144927,1.87473354835864,0.779358013808606,0,0.422530259330042,0,0,0,1.08245520505607,0.506719730950197,2.52762222507392,0.79928715803342,0,2.22663208597237,1.90833859442749,2.74018930480927,1.84492397804847,2.11011696773672,1.52865319276416,1.38233250462643,0.494389935468748,1.87979163995885,0,1.45590164952668,0.662524555381181,0.484875253135222,0,12.0040126774734,8.79676168616511,1.02182822083437,0.11981512450592,0,0,20.3715269590559,24.7050325522058,15.3298309577695,23.4662832259573,24.8043993610421,26.1812936145046,18.6577452527921,3.46253837091075,1.61729061793121,4.80173241023982,1.89397670297827,3.6433724029557,2.75882525320168,2.88099407688559,2.41127708537144,1.90502197623718,3.07472928683639,4.2165776051878,5.69147415625834,2.37124792226126,4.72765200419548,7.2139960907219,11.3981780862339,6.39508673218875,3.1342694986995,4.52720700097476,5.17489093728082,0,0,0,1.03562886267751,0.703578179943289,0.720248245844059,0.23674473558521,0.983821158737019,0.308534225774757,0,0.536546802799238,0,0.822799249567402,0.492502392237286,0.486412857275134,2.33919979880532,1.75640092232841,2.28150911892632,29.0200129018496,14.6124549578584,0,0.793351699990633,5.11891801284562,3.25131340604614,3.60828891701861,1.4117846723634,2.44615848229357,1.33157938278791,0,0.988193728344065,0.502670417600539,1.39269530428806,0.38992817423824,0.898819408654221,0.216138049874694,0.796565093017469,2.84501851429623,2.28497025219458,3.38123207019241,4.68398054044223,3.87904974335251,2.10407459670956,0.822074982615345,0.147610147979602,0.941992367048249,0.246794327843601,0,0.667380422864376,0.196558995113203,0.224862112384854,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.554259570499814,3.7898282354097,2.93336957595647,1.86719594352707,1.17345124144251,0.167506257441816,0,0,0.315270288212382,0.8858587585951,0.637819074629948,0,0.172684981865896,0.289298117163023,0,0.54390568381871,0.491764273019036,0.275936746304732,22.7981837782665,17.6989646754227,0,1.76729649043061,1.89304931649754,0.390438744296638,1.93881057959519,0.716906393857656,1.11399337041197,1.98153571552183,3.23848561339915,2.33804686329049,0.790575555893047,23.4564560987919,2.12910127812403,8.01295216502649,6.35259141478947,4.12425307431339,0,3.15614827001476,1.81394134178851,1.32023555829129,0.885905678642318,1.22974059177571,1.55056975900933,1.81766864738753,0,1.58018378967908,1.05418608574999,1.03135543248187,1.70219802876894,1.8006109403131,1.94038025674132,3.64372959553707,4.25616560741457,5.35106452806212,6.41741180348272,5.78483403317739,1.87737366450968,1.48282449604674,2.64634077665954,0.98931751764888,2.9063596805263,0.965006798850494,0.835606408021955,0.328281799490123,1.45740418314925,19.655082013114,0.854354403989263,0.82554747185289,0,0,0,0.228778173206523,0,0.419854356970974,0.276399947608848,2.86401185404534,6.80122386199441,2.84647253977588,3.02414954301044,2.71814784818809,2.83871332870031,2.69728692769641,2.81021749466142,2.09404753587224,0.90730481304255,0,3.38215763210514,3.43888055901151,4.13646226142744,1.75006069509643,2.19571699912143,1.85851738039856,0.938857909166032,1.69265700297135,1.36317147753424,3.38217769156408,1.72818003754719,0.316011120628178,1.21635129174099,0.616265742988964,0.25984164595559,0.716106782669926,0.596044064343795,0.360586348559907,0.738447635872886,0.403865799792591,0.609654453239999,0.705783295957884,0.38983152295901,0.288635524920988,0.350630706544707,0.680191150845634,1.33191572024439,0.538283139656854,1.34307693091263,15.4551675225752,3.75364950902364,2.93042598827624,0.857473516316263,3.00943262421218,31.0613513439387,25.3178880078947,29.7905666988486,31.1054260042075,22.6077231524312,28.7049681008086,27.0009000092722,26.1186297870048,21.2976932222576,24.3347346523355,3.1136204275253,4.38927360741134,5.63420898988643,3.64660075602441,7.54607385460736,5.88299227040045,3.11145418922261,4.12070114477788,4.81378814387723,3.79045817645696,3.54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| |||
|short_description=p1@Gfra4 | |||
}} |
Revision as of 01:40, 4 August 2015
Short description: | p1@Gfra4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gfra4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000136569_5end |
EntrezGene: | 14588 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.74e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.74e-14 | 23 |
neuron | 5.17e-10 | 33 |
neuronal stem cell | 5.17e-10 | 33 |
neuroblast | 5.17e-10 | 33 |
electrically signaling cell | 5.17e-10 | 33 |
electrically responsive cell | 1.86e-08 | 39 |
electrically active cell | 1.86e-08 | 39 |
neural cell | 4.17e-08 | 43 |
ectodermal cell | 1.36e-07 | 44 |
neurectodermal cell | 1.36e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.56e-25 | 73 |
regional part of nervous system | 6.67e-25 | 54 |
nervous system | 1.56e-23 | 75 |
neural tube | 2.46e-23 | 52 |
neural rod | 2.46e-23 | 52 |
future spinal cord | 2.46e-23 | 52 |
neural keel | 2.46e-23 | 52 |
neurectoderm | 2.29e-22 | 64 |
neural plate | 2.29e-22 | 64 |
presumptive neural plate | 2.29e-22 | 64 |
brain | 6.22e-20 | 47 |
future brain | 6.22e-20 | 47 |
regional part of brain | 2.92e-19 | 46 |
gray matter | 2.48e-18 | 34 |
ectoderm-derived structure | 6.31e-18 | 95 |
ectoderm | 6.31e-18 | 95 |
presumptive ectoderm | 6.31e-18 | 95 |
pre-chordal neural plate | 1.33e-17 | 49 |
anterior neural tube | 2.01e-17 | 40 |
ecto-epithelium | 3.43e-17 | 73 |
regional part of forebrain | 8.08e-17 | 39 |
forebrain | 8.08e-17 | 39 |
future forebrain | 8.08e-17 | 39 |
brain grey matter | 5.41e-15 | 29 |
regional part of telencephalon | 5.41e-15 | 29 |
telencephalon | 5.41e-15 | 29 |
structure with developmental contribution from neural crest | 7.68e-13 | 92 |
cerebral cortex | 3.11e-10 | 21 |
cerebral hemisphere | 3.11e-10 | 21 |
pallium | 3.11e-10 | 21 |
regional part of cerebral cortex | 2.74e-08 | 17 |
occipital lobe | 2.98e-08 | 10 |
visual cortex | 2.98e-08 | 10 |
neocortex | 2.98e-08 | 10 |