FFCP PHASE1:Mm9::chr14:20796196..20796260,-: Difference between revisions
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{{FFCP|EntrezGene=14702|HGNC=|MCL_coexpression_id=13|UniProt=P63213|association_with_transcript=20bp_to_ENSMUST00000159028_5end|description=CAGE_peak_1_at_Gng2_5end|id=chr14:20796196..20796260,-|ontology_enrichment_celltype=CL:0000540!8.88e-16!33;CL:0000047!8.88e-16!33;CL:0000031!8.88e-16!33;CL:0000404!8.88e-16!33;CL:0000117!7.75e-13!23;CL:0000337!7.75e-13!23;CL:0000393!4.21e-12!39;CL:0000211!4.21e-12!39;CL:0002319!1.32e-11!43;CL:0000221!1.44e-11!44;CL:0000133!1.44e-11!44;CL:0000055!1.38e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,8.62e-16,33;CL:0000047,8.62e-16,33;CL:0000031,8.62e-16,33;CL:0000404,8.62e-16,33;CL:0000117,7.57e-13,23;CL:0000337,7.57e-13,23;CL:0000393,5.07e-12,39;CL:0000211,5.07e-12,39;CL:0002319,1.29e-11,43;CL:0000221,1.41e-11,44;CL:0000133,1.41e-11,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.01e-24!75;UBERON:0001016!1.01e-24!75;UBERON:0001017!1.08e-23!73;UBERON:0005743!1.08e-23!73;UBERON:0001049!2.49e-19!52;UBERON:0005068!2.49e-19!52;UBERON:0006241!2.49e-19!52;UBERON:0007135!2.49e-19!52;UBERON:0004121!4.32e-18!102;UBERON:0000924!4.32e-18!102;UBERON:0006601!4.32e-18!102;UBERON:0002346!5.27e-18!71;UBERON:0003075!5.27e-18!71;UBERON:0007284!5.27e-18!71;UBERON:0002616!1.92e-17!49;UBERON:0000955!3.46e-17!50;UBERON:0006238!3.46e-17!50;UBERON:0003080!1.27e-16!40;UBERON:0002020!2.14e-16!34;UBERON:0002780!4.71e-16!39;UBERON:0001890!4.71e-16!39;UBERON:0006240!4.71e-16!39;UBERON:0003056!5.48e-16!49;UBERON:0000033!3.92e-15!63;UBERON:0002791!7.50e-14!29;UBERON:0003528!7.50e-14!29;UBERON:0001893!7.50e-14!29;UBERON:0000956!3.70e-10!21;UBERON:0001869!3.70e-10!21;UBERON:0000203!3.70e-10!21;UBERON:0002619!5.45e-08!17;UBERON:0002021!5.70e-07!10;UBERON:0000411!5.70e-07!10;UBERON:0001950!5.70e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.66e-25,75;UBERON:0001017,1.03e-23,73;UBERON:0002346,2.01e-20,64;UBERON:0003075,2.01e-20,64;UBERON:0007284,2.01e-20,64;UBERON:0000073,4.05e-20,54;UBERON:0004121,9.34e-20,95;UBERON:0000924,9.34e-20,95;UBERON:0006601,9.34e-20,95;UBERON:0001049,2.39e-19,52;UBERON:0005068,2.39e-19,52;UBERON:0006241,2.39e-19,52;UBERON:0007135,2.39e-19,52;UBERON:0010371,4.58e-17,73;UBERON:0003080,1.23e-16,40;UBERON:0002020,2.08e-16,34;UBERON:0002616,2.22e-16,46;UBERON:0000955,4.02e-16,47;UBERON:0006238,4.02e-16,47;UBERON:0002780,4.57e-16,39;UBERON:0001890,4.57e-16,39;UBERON:0006240,4.57e-16,39;UBERON:0003056,5.31e-16,49;UBERON:0010314,5.26e-14,92;UBERON:0003528,7.31e-14,29;UBERON:0002791,7.31e-14,29;UBERON:0001893,7.31e-14,29;UBERON:0000956,3.63e-10,21;UBERON:0001869,3.63e-10,21;UBERON:0000203,3.63e-10,21;UBERON:0002619,5.38e-08,17;UBERON:0002021,5.64e-07,10;UBERON:0000411,5.64e-07,10;UBERON:0001950,5.64e-07,10|phase1_expression=10.089377367602,0.697950815278722,0,0,0,0.839396359559449,0.700837921786577,10.4589891987677,0.703943610758334,0.468129052643987,1.02730780935303,0.239316476986009,8.56003649656029,4.63328132820686,7.99463428357591,10.1237633694913,3.49780939064073,38.6441152563841,38.9404991440298,30.9804445812562,10.2902381082794,10.0283860712894,21.9407822876706,4.7997726838022,3.44113921600755,0,0,0,0.950117097281869,1.51218077855958,0.443461021310609,0,0,0,0,0,0,42.2716947044277,39.8481025707138,31.9349483824017,39.999741186109,37.5675016727145,37.86980753643,0.377690453926732,0.608261587317087,1.83546752161682,1.56478268869608,13.2995345392072,3.51497892375155,4.27745777963423,5.45947044338914,8.62515386189829,33.3887386054895,17.4086914082723,15.1242209614109,10.8048963135098,8.02293631828519,30.9403255366465,65.9551662402289,42.3192783417626,77.96126263126,4.74382344896785,3.55717918444456,25.1971920838792,18.7884608887725,19.1829631035447,7.19040265244171,5.37905627450176,44.7939125172623,43.6069180811361,48.5850660721692,31.7072592688222,36.001572175113,64.6751419854957,59.0408101472336,87.325784727952,20.9220173898839,36.1355166781081,34.715076515911,76.4940468835124,101.093846180663,85.9507061418654,18.9844439320939,33.7657566019008,39.421947926417,43.0157734791555,55.2402121500519,58.902224880795,28.0186915332781,47.6856544273817,6.08715426273523,1.72084775396277,0.679971333707751,0,0,0.448026887097336,6.03911006566533,0.170430322578058,0.259786004602869,0,13.8026551381147,0,0,0,0,0,0,3.53970027129086,71.4668558866194,9.94562331734326,10.7560902595004,5.78484408793068,8.07154240396205,6.93324146542064,14.4634109776917,4.64966387919799,4.44950941921873,4.62717942143717,7.07688441559899,4.52947179852746,7.50861162765338,6.78825354389311,0,21.3729981818429,17.3840766655168,3.0654846625031,13.1796636956512,13.7977628128484,11.4363204365758,47.4836326913288,20.5875271268382,60.8167064226264,61.012336387489,37.3344567702283,40.1030925999951,35.5308366118389,8.86002465497752,7.2156042953854,2.52722758433675,6.52369753248069,8.97831056442656,17.7024620413774,29.3501271582719,18.6873974116287,15.5123218065028,13.4519406299092,17.8970293909082,12.6764651662118,14.0119195406347,24.5837904218165,21.993890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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14702 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P63213 | |||
|association_with_transcript=20bp_to_ENSMUST00000159028_5end | |||
|cluster_id=chr14:20796196..20796260,- | |||
|description=CAGE_peak_1_at_Gng2_5end | |||
|id=chr14:20796196..20796260,- | |||
|ontology_enrichment_celltype=CL:0000540!8.88e-16!33;CL:0000047!8.88e-16!33;CL:0000031!8.88e-16!33;CL:0000404!8.88e-16!33;CL:0000117!7.75e-13!23;CL:0000337!7.75e-13!23;CL:0000393!4.21e-12!39;CL:0000211!4.21e-12!39;CL:0002319!1.32e-11!43;CL:0000221!1.44e-11!44;CL:0000133!1.44e-11!44;CL:0000055!1.38e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.62e-16,33;CL:0000047,8.62e-16,33;CL:0000031,8.62e-16,33;CL:0000404,8.62e-16,33;CL:0000117,7.57e-13,23;CL:0000337,7.57e-13,23;CL:0000393,5.07e-12,39;CL:0000211,5.07e-12,39;CL:0002319,1.29e-11,43;CL:0000221,1.41e-11,44;CL:0000133,1.41e-11,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.01e-24!75;UBERON:0001016!1.01e-24!75;UBERON:0001017!1.08e-23!73;UBERON:0005743!1.08e-23!73;UBERON:0001049!2.49e-19!52;UBERON:0005068!2.49e-19!52;UBERON:0006241!2.49e-19!52;UBERON:0007135!2.49e-19!52;UBERON:0004121!4.32e-18!102;UBERON:0000924!4.32e-18!102;UBERON:0006601!4.32e-18!102;UBERON:0002346!5.27e-18!71;UBERON:0003075!5.27e-18!71;UBERON:0007284!5.27e-18!71;UBERON:0002616!1.92e-17!49;UBERON:0000955!3.46e-17!50;UBERON:0006238!3.46e-17!50;UBERON:0003080!1.27e-16!40;UBERON:0002020!2.14e-16!34;UBERON:0002780!4.71e-16!39;UBERON:0001890!4.71e-16!39;UBERON:0006240!4.71e-16!39;UBERON:0003056!5.48e-16!49;UBERON:0000033!3.92e-15!63;UBERON:0002791!7.50e-14!29;UBERON:0003528!7.50e-14!29;UBERON:0001893!7.50e-14!29;UBERON:0000956!3.70e-10!21;UBERON:0001869!3.70e-10!21;UBERON:0000203!3.70e-10!21;UBERON:0002619!5.45e-08!17;UBERON:0002021!5.70e-07!10;UBERON:0000411!5.70e-07!10;UBERON:0001950!5.70e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.66e-25,75;UBERON:0001017,1.03e-23,73;UBERON:0002346,2.01e-20,64;UBERON:0003075,2.01e-20,64;UBERON:0007284,2.01e-20,64;UBERON:0000073,4.05e-20,54;UBERON:0004121,9.34e-20,95;UBERON:0000924,9.34e-20,95;UBERON:0006601,9.34e-20,95;UBERON:0001049,2.39e-19,52;UBERON:0005068,2.39e-19,52;UBERON:0006241,2.39e-19,52;UBERON:0007135,2.39e-19,52;UBERON:0010371,4.58e-17,73;UBERON:0003080,1.23e-16,40;UBERON:0002020,2.08e-16,34;UBERON:0002616,2.22e-16,46;UBERON:0000955,4.02e-16,47;UBERON:0006238,4.02e-16,47;UBERON:0002780,4.57e-16,39;UBERON:0001890,4.57e-16,39;UBERON:0006240,4.57e-16,39;UBERON:0003056,5.31e-16,49;UBERON:0010314,5.26e-14,92;UBERON:0003528,7.31e-14,29;UBERON:0002791,7.31e-14,29;UBERON:0001893,7.31e-14,29;UBERON:0000956,3.63e-10,21;UBERON:0001869,3.63e-10,21;UBERON:0000203,3.63e-10,21;UBERON:0002619,5.38e-08,17;UBERON:0002021,5.64e-07,10;UBERON:0000411,5.64e-07,10;UBERON:0001950,5.64e-07,10 | |||
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| |||
|short_description=p1@Gng2 | |||
}} |
Revision as of 02:20, 4 August 2015
Short description: | p1@Gng2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gng2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 20bp_to_ENSMUST00000159028_5end |
EntrezGene: | 14702 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.62e-16 | 33 |
neuronal stem cell | 8.62e-16 | 33 |
neuroblast | 8.62e-16 | 33 |
electrically signaling cell | 8.62e-16 | 33 |
CNS neuron (sensu Vertebrata) | 7.57e-13 | 23 |
neuroblast (sensu Vertebrata) | 7.57e-13 | 23 |
electrically responsive cell | 5.07e-12 | 39 |
electrically active cell | 5.07e-12 | 39 |
neural cell | 1.29e-11 | 43 |
ectodermal cell | 1.41e-11 | 44 |
neurectodermal cell | 1.41e-11 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.66e-25 | 75 |
central nervous system | 1.03e-23 | 73 |
neurectoderm | 2.01e-20 | 64 |
neural plate | 2.01e-20 | 64 |
presumptive neural plate | 2.01e-20 | 64 |
regional part of nervous system | 4.05e-20 | 54 |
ectoderm-derived structure | 9.34e-20 | 95 |
ectoderm | 9.34e-20 | 95 |
presumptive ectoderm | 9.34e-20 | 95 |
neural tube | 2.39e-19 | 52 |
neural rod | 2.39e-19 | 52 |
future spinal cord | 2.39e-19 | 52 |
neural keel | 2.39e-19 | 52 |
ecto-epithelium | 4.58e-17 | 73 |
anterior neural tube | 1.23e-16 | 40 |
gray matter | 2.08e-16 | 34 |
regional part of brain | 2.22e-16 | 46 |
brain | 4.02e-16 | 47 |
future brain | 4.02e-16 | 47 |
regional part of forebrain | 4.57e-16 | 39 |
forebrain | 4.57e-16 | 39 |
future forebrain | 4.57e-16 | 39 |
pre-chordal neural plate | 5.31e-16 | 49 |
structure with developmental contribution from neural crest | 5.26e-14 | 92 |
brain grey matter | 7.31e-14 | 29 |
regional part of telencephalon | 7.31e-14 | 29 |
telencephalon | 7.31e-14 | 29 |
cerebral cortex | 3.63e-10 | 21 |
cerebral hemisphere | 3.63e-10 | 21 |
pallium | 3.63e-10 | 21 |
regional part of cerebral cortex | 5.38e-08 | 17 |
occipital lobe | 5.64e-07 | 10 |
visual cortex | 5.64e-07 | 10 |
neocortex | 5.64e-07 | 10 |