FFCP PHASE1:Mm9::chr17:10405286..10405312,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2190|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:10405286..10405312,-|id=chr17:10405286..10405312,-|ontology_enrichment_celltype=CL:0000221!2.51e-07!44;CL:0000133!2.51e-07!44;CL:0000117!3.77e-07!23;CL:0000337!3.77e-07!23;CL:0002319!5.82e-07!43;CL:0000540!9.93e-07!33;CL:0000047!9.93e-07!33;CL:0000031!9.93e-07!33;CL:0000404!9.93e-07!33|ontology_enrichment_celltype_v019_2=CL:0000221,7.19e-08,44;CL:0000133,7.19e-08,44;CL:0002319,1.78e-07,43;CL:0000117,3.10e-07,23;CL:0000337,3.10e-07,23;CL:0000540,7.67e-07,33;CL:0000047,7.67e-07,33;CL:0000031,7.67e-07,33;CL:0000404,7.67e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000025!5.85e-17!114;UBERON:0004111!1.47e-16!122;UBERON:0000073!1.26e-14!75;UBERON:0001016!1.26e-14!75;UBERON:0004121!2.81e-14!102;UBERON:0000924!2.81e-14!102;UBERON:0006601!2.81e-14!102;UBERON:0001017!1.05e-13!73;UBERON:0005743!1.05e-13!73;UBERON:0002346!6.33e-12!71;UBERON:0003075!6.33e-12!71;UBERON:0007284!6.33e-12!71;UBERON:0001049!1.02e-11!52;UBERON:0005068!1.02e-11!52;UBERON:0006241!1.02e-11!52;UBERON:0007135!1.02e-11!52;UBERON:0000955!6.45e-11!50;UBERON:0006238!6.45e-11!50;UBERON:0000033!6.78e-11!63;UBERON:0002020!1.80e-10!34;UBERON:0002616!1.91e-10!49;UBERON:0000477!4.85e-08!154;UBERON:0002791!5.03e-08!29;UBERON:0003528!5.03e-08!29;UBERON:0001893!5.03e-08!29;UBERON:0003056!1.80e-07!49;UBERON:0003080!2.25e-07!40;UBERON:0002780!5.70e-07!39;UBERON:0001890!5.70e-07!39;UBERON:0006240!5.70e-07!39;UBERON:0000062!7.67e-07!269|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.36e-18,92;UBERON:0000025,9.65e-17,114;UBERON:0004111,2.54e-16,122;UBERON:0001016,1.62e-15,75;UBERON:0004121,6.76e-15,95;UBERON:0000924,6.76e-15,95;UBERON:0006601,6.76e-15,95;UBERON:0001017,1.56e-14,73;UBERON:0000073,2.06e-13,54;UBERON:0002346,9.04e-13,64;UBERON:0003075,9.04e-13,64;UBERON:0007284,9.04e-13,64;UBERON:0010371,2.31e-12,73;UBERON:0001049,3.55e-12,52;UBERON:0005068,3.55e-12,52;UBERON:0006241,3.55e-12,52;UBERON:0007135,3.55e-12,52;UBERON:0002020,8.99e-11,34;UBERON:0000955,1.29e-09,47;UBERON:0006238,1.29e-09,47;UBERON:0002616,3.86e-09,46;UBERON:0003528,3.50e-08,29;UBERON:0002791,3.50e-08,29;UBERON:0001893,3.50e-08,29;UBERON:0003056,1.46e-07,49;UBERON:0003080,2.25e-07,40;UBERON:0002780,5.93e-07,39;UBERON:0001890,5.93e-07,39;UBERON:0006240,5.93e-07,39|phase1_expression=1.60148847104794,0,0,0,0,0,0,0,0.422366166455,0.234064526321993,0,0,0.171200729931206,0.0874204024189974,1.33243904726265,1.01237633694913,0,0,0.274228867211478,0,4.16712121740242,1.09220046320974,0.261199789138935,0.319984845586813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17646297606203,0.683045484958446,0,0.755380907853464,1.01376931219515,0.367093504323363,0,3.05235218932625,1.5378032791413,1.74986909166855,1.25987779462826,0,0.167782606057736,0,0.336093799142464,1.80081605225163,1.14613375975503,1.54701627683233,1.41621522601718,2.64495489636016,1.26766280701236,0.677689064138264,0.889294796111139,3.5995988691256,4.94433181283487,3.5524005747305,5.09320187881288,3.84218305321555,2.48855069540346,3.64516033495565,2.10324961351382,6.28432165688368,5.07997644188711,1.5923803897944,2.39613677545591,0.919218786610021,8.8092704799511,12.257984456178,15.5142598588806,1.05509030184155,2.47016637726506,2.6045668527838,9.77140496504833,12.9435400307286,19.8637722109853,11.1958862479994,15.8032565687004,3.91438836233131,5.30083353332288,5.2144376473682,1.73918693221007,1.72084775396277,0,0.539703191637817,2.59910566979068,0.448026887097336,1.26399978118577,1.1930122580464,1.55871602761721,1.7666978725517,4.64783285263046,1.28326477414318,0,0,0.649473123033642,1.01343946190039,0.505524445014783,0.91347103775248,0.258937883647172,1.1875371125186,0.693941307064543,1.52232739156071,1.61430848079241,1.50722640552623,2.23418543557839,2.26199864393416,1.23597483867187,1.3013942122792,0,2.42650274921114,2.87093973998512,3.87900202508178,0,5.5628351432194,10.0534419270458,0.255457055208591,0.958520996047362,0.599902730993408,1.14363204365758,5.84183493678809,3.66000482254901,3.26701315493447,3.99795936442236,9.46147192122223,9.76603809429932,8.76102820565891,0.916554274652847,1.7416975885413,0.758168275301024,1.89397670297827,2.21204753036596,0.229902104433473,1.26043490863744,1.50704817835715,1.83698547708585,3.07472928683639,2.06143794031403,2.32833033665114,0.215567992932842,0.567318240503458,0.527853372491847,1.09597866213787,0.556094498451196,0.348252166522167,1.64625709126355,3.18454826909589,0,0,1.13665399758237,1.03562886267751,2.57978665979206,3.24111710629827,1.18372367792605,3.73852040320067,6.17068451549513,3.72054311600653,5.633741429392,4.32031766758527,6.91151369636618,14.4467368389604,6.89084881139774,8.77199924551994,7.90380415047782,7.24714661306008,4.41608891984667,4.32199371992995,0,0.793351699990633,0.853153002140936,1.39342003116263,0.128867461322093,0.605050573870028,0.667134131534611,0,0.474529061544512,0.988193728344065,0.25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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2190 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:10405286..10405312,- | |||
|description=CAGE_peak_at_chr17:10405286..10405312,- | |||
|id=chr17:10405286..10405312,- | |||
|ontology_enrichment_celltype=CL:0000221!2.51e-07!44;CL:0000133!2.51e-07!44;CL:0000117!3.77e-07!23;CL:0000337!3.77e-07!23;CL:0002319!5.82e-07!43;CL:0000540!9.93e-07!33;CL:0000047!9.93e-07!33;CL:0000031!9.93e-07!33;CL:0000404!9.93e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,7.19e-08,44;CL:0000133,7.19e-08,44;CL:0002319,1.78e-07,43;CL:0000117,3.10e-07,23;CL:0000337,3.10e-07,23;CL:0000540,7.67e-07,33;CL:0000047,7.67e-07,33;CL:0000031,7.67e-07,33;CL:0000404,7.67e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!5.85e-17!114;UBERON:0004111!1.47e-16!122;UBERON:0000073!1.26e-14!75;UBERON:0001016!1.26e-14!75;UBERON:0004121!2.81e-14!102;UBERON:0000924!2.81e-14!102;UBERON:0006601!2.81e-14!102;UBERON:0001017!1.05e-13!73;UBERON:0005743!1.05e-13!73;UBERON:0002346!6.33e-12!71;UBERON:0003075!6.33e-12!71;UBERON:0007284!6.33e-12!71;UBERON:0001049!1.02e-11!52;UBERON:0005068!1.02e-11!52;UBERON:0006241!1.02e-11!52;UBERON:0007135!1.02e-11!52;UBERON:0000955!6.45e-11!50;UBERON:0006238!6.45e-11!50;UBERON:0000033!6.78e-11!63;UBERON:0002020!1.80e-10!34;UBERON:0002616!1.91e-10!49;UBERON:0000477!4.85e-08!154;UBERON:0002791!5.03e-08!29;UBERON:0003528!5.03e-08!29;UBERON:0001893!5.03e-08!29;UBERON:0003056!1.80e-07!49;UBERON:0003080!2.25e-07!40;UBERON:0002780!5.70e-07!39;UBERON:0001890!5.70e-07!39;UBERON:0006240!5.70e-07!39;UBERON:0000062!7.67e-07!269 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.36e-18,92;UBERON:0000025,9.65e-17,114;UBERON:0004111,2.54e-16,122;UBERON:0001016,1.62e-15,75;UBERON:0004121,6.76e-15,95;UBERON:0000924,6.76e-15,95;UBERON:0006601,6.76e-15,95;UBERON:0001017,1.56e-14,73;UBERON:0000073,2.06e-13,54;UBERON:0002346,9.04e-13,64;UBERON:0003075,9.04e-13,64;UBERON:0007284,9.04e-13,64;UBERON:0010371,2.31e-12,73;UBERON:0001049,3.55e-12,52;UBERON:0005068,3.55e-12,52;UBERON:0006241,3.55e-12,52;UBERON:0007135,3.55e-12,52;UBERON:0002020,8.99e-11,34;UBERON:0000955,1.29e-09,47;UBERON:0006238,1.29e-09,47;UBERON:0002616,3.86e-09,46;UBERON:0003528,3.50e-08,29;UBERON:0002791,3.50e-08,29;UBERON:0001893,3.50e-08,29;UBERON:0003056,1.46e-07,49;UBERON:0003080,2.25e-07,40;UBERON:0002780,5.93e-07,39;UBERON:0001890,5.93e-07,39;UBERON:0006240,5.93e-07,39 | |||
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| |||
|short_description=p@chr17:10405286..10405312,- | |||
}} |
Latest revision as of 07:08, 4 August 2015
Short description: | p@chr17:10405286..10405312, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:10405286..10405312, - |
Coexpression cluster: | MCL_coexpression_mm9:2190 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 7.19e-08 | 44 |
neurectodermal cell | 7.19e-08 | 44 |
neural cell | 1.78e-07 | 43 |
CNS neuron (sensu Vertebrata) | 3.10e-07 | 23 |
neuroblast (sensu Vertebrata) | 3.10e-07 | 23 |
neuron | 7.67e-07 | 33 |
neuronal stem cell | 7.67e-07 | 33 |
neuroblast | 7.67e-07 | 33 |
electrically signaling cell | 7.67e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.36e-18 | 92 |
tube | 9.65e-17 | 114 |
anatomical conduit | 2.54e-16 | 122 |
nervous system | 1.62e-15 | 75 |
ectoderm-derived structure | 6.76e-15 | 95 |
ectoderm | 6.76e-15 | 95 |
presumptive ectoderm | 6.76e-15 | 95 |
central nervous system | 1.56e-14 | 73 |
regional part of nervous system | 2.06e-13 | 54 |
neurectoderm | 9.04e-13 | 64 |
neural plate | 9.04e-13 | 64 |
presumptive neural plate | 9.04e-13 | 64 |
ecto-epithelium | 2.31e-12 | 73 |
neural tube | 3.55e-12 | 52 |
neural rod | 3.55e-12 | 52 |
future spinal cord | 3.55e-12 | 52 |
neural keel | 3.55e-12 | 52 |
gray matter | 8.99e-11 | 34 |
brain | 1.29e-09 | 47 |
future brain | 1.29e-09 | 47 |
regional part of brain | 3.86e-09 | 46 |
brain grey matter | 3.50e-08 | 29 |
regional part of telencephalon | 3.50e-08 | 29 |
telencephalon | 3.50e-08 | 29 |
pre-chordal neural plate | 1.46e-07 | 49 |
anterior neural tube | 2.25e-07 | 40 |
regional part of forebrain | 5.93e-07 | 39 |
forebrain | 5.93e-07 | 39 |
future forebrain | 5.93e-07 | 39 |