FFCP PHASE1:Mm9::chr19:5468487..5468506,-: Difference between revisions
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{{FFCP|EntrezGene=13041|HGNC=|MCL_coexpression_id=187|UniProt=P56203,Q8C2M0|association_with_transcript=0bp_to_ENSMUST00000025844,NM_009985,uc008gdk.2_5end|description=CAGE_peak_1_at_Ctsw_5end|id=chr19:5468487..5468506,-|ontology_enrichment_celltype=CL:0000084!5.13e-08!11;CL:0000827!5.13e-08!11;CL:0000838!8.28e-07!12|ontology_enrichment_celltype_v019_2=CL:0000084,3.44e-09,11;CL:0000827,3.44e-09,11;CL:0000838,5.75e-08,12;CL:0000791,1.41e-07,9;CL:0000789,1.41e-07,9;CL:0002420,1.41e-07,9;CL:0002419,1.41e-07,9;CL:0000790,1.41e-07,9;CL:0000542,5.97e-07,13;CL:0000051,5.97e-07,13;CL:0000624,9.34e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!5.75e-11!29;UBERON:0001004!1.52e-10!42;UBERON:0004119!1.63e-10!130;UBERON:0000925!1.63e-10!130;UBERON:0006595!1.63e-10!130;UBERON:0001007!3.46e-10!128;UBERON:0001555!3.46e-10!128;UBERON:0007026!3.46e-10!128;UBERON:0000065!4.00e-10!41;UBERON:0000072!7.65e-10!27;UBERON:0004921!1.83e-09!126;UBERON:0004185!1.83e-09!126;UBERON:0002193!2.58e-09!48;UBERON:0003408!6.56e-09!24;UBERON:0002370!1.76e-08!23;UBERON:0000974!1.76e-08!23;UBERON:0004807!1.76e-08!23;UBERON:0005058!1.76e-08!23;UBERON:0003351!1.76e-08!23;UBERON:0009113!1.76e-08!23;UBERON:0003295!1.76e-08!23;UBERON:0009722!1.76e-08!23;UBERON:0005562!1.76e-08!23;UBERON:0007690!1.76e-08!23;UBERON:0006562!4.39e-08!24;UBERON:0001557!4.39e-08!24;UBERON:0001042!4.39e-08!24;UBERON:0008814!4.39e-08!24;UBERON:0009145!4.39e-08!24;UBERON:0000077!4.85e-08!97;UBERON:0002390!5.51e-08!45;UBERON:0003061!5.51e-08!45;UBERON:0001041!1.17e-07!92;UBERON:0005057!2.00e-07!51;UBERON:0002405!2.23e-07!70;UBERON:0000063!5.54e-07!35|ontology_enrichment_uberon_v019_2=UBERON:0004177,5.21e-14,29;UBERON:0005057,5.21e-14,29;UBERON:0004119,2.25e-12,118;UBERON:0000925,2.25e-12,118;UBERON:0006595,2.25e-12,118;UBERON:0000077,2.61e-12,35;UBERON:0000072,2.73e-12,27;UBERON:0001007,2.76e-12,116;UBERON:0001555,2.76e-12,116;UBERON:0007026,2.76e-12,116;UBERON:0002193,3.68e-12,48;UBERON:0002405,3.68e-12,48;UBERON:0001004,1.08e-11,42;UBERON:0003408,1.51e-11,24;UBERON:0004921,2.10e-11,114;UBERON:0000065,3.36e-11,41;UBERON:0002370,4.96e-11,23;UBERON:0000974,4.96e-11,23;UBERON:0004807,4.96e-11,23;UBERON:0005058,4.96e-11,23;UBERON:0003351,4.96e-11,23;UBERON:0009113,4.96e-11,23;UBERON:0003295,4.96e-11,23;UBERON:0009722,4.96e-11,23;UBERON:0005562,4.96e-11,23;UBERON:0007690,4.96e-11,23;UBERON:0002390,1.64e-10,45;UBERON:0003061,1.64e-10,45;UBERON:0006562,3.67e-10,24;UBERON:0001557,3.67e-10,24;UBERON:0001042,3.67e-10,24;UBERON:0008814,3.67e-10,24;UBERON:0009145,3.67e-10,24;UBERON:0001041,1.71e-09,80|phase1_expression=0.160148847104794,0.348975407639361,0,0.60492842261366,0,0.16787927191189,0,193.943231809248,49.83920764169,63.1974221069382,9.75942418885378,5.02564601670619,80.4643430676667,89.7807532843103,3.33109761815663,11.9460407759997,0.699561878128147,38.3286530910259,30.7136331276855,19.5219239827094,4.08207792725135,176.936475039978,150.189878754888,15.5192650109604,15.8292403936347,1.72269589234506,0,0.430942465371778,20.9025761402011,16.6339885641554,14.1907526819395,0,0,0,0.288851619751275,1.49611180822643,0.204169356262369,0.418531630736908,0,0,1.76469446409304,0.683045484958446,0.971020706062307,0.125896817975577,0,0,0,0,0.219686182734472,0,0,2.87505128729943,0.167782606057736,59.4796956449302,423.478186919505,0.514518872071894,0.286533439938757,0,2.42779753031517,6.87688273053643,2.53532561402472,0,0,0.449949858640699,2.96659908770092,2.1314403448383,0,0,0.311068836925433,1.75507719831198,1.47227472945967,3.14216082844184,2.20868540951614,1.95985278743926,2.20444583341944,2.75765635983006,0,0.127687338085188,0,3.16527090552465,2.56165402086747,2.6045668527838,0,0,0.45839474333043,1.76777151284201,0.142371680799103,1.3047961207771,0.37863096666592,0.151143120213571,0.869593466105033,2.58127163094416,0,0,0.649776417447669,0,5.05599912474307,0.511290967734173,1.03914401841148,1.06001872353102,0,0,0,0,58.2360900320166,55.4858105390466,54.5966400615966,6.05174562511018,81.3064954652119,13.3597925158342,0.346970653532272,0.913396434936424,0.230615497256059,0.60289056221049,0.352766121407114,1.13099932196708,0,4.77177877835708,11.4999371753484,1.29413479957927,2.87093973998512,6.78825354389311,11.1835056730873,0.292780797011547,0.41889341362691,25.034791410442,4.55297473122497,2.39961092397363,1.90605340609597,0.299581278809645,0.915001205637253,1.25654352112864,0.173824320192276,0.255715457330331,0.20778804455956,0,0.203678727700633,10.3257785606377,4.29628689337247,0.841767423545896,0.520481771850815,0.689706313300419,1.62055916824814,0.753524089178575,0.612328492361951,0.2562274405697,0.468508622798644,0.776110112217047,0,0.756424320671277,0.527853372491847,0.657587197282725,0.278047249225598,0.348252166522167,1.02891068203972,0.796137067273973,0.702213187313235,0.51469581422943,0.284163499395593,1.03562886267751,0.234526059981096,0.540186184383045,0.23674473558521,0.393528463494808,0,0.465067889500816,0,0.3502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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:13041 | |||
|HGNC= | |||
|MCL_coexpression_id=187 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P56203,uniprot:Q8C2M0 | |||
|association_with_transcript=0bp_to_ENSMUST00000025844,NM_009985,uc008gdk.2_5end | |||
|cluster_id=chr19:5468487..5468506,- | |||
|description=CAGE_peak_1_at_Ctsw_5end | |||
|id=chr19:5468487..5468506,- | |||
|ontology_enrichment_celltype=CL:0000084!5.13e-08!11;CL:0000827!5.13e-08!11;CL:0000838!8.28e-07!12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.44e-09,11;CL:0000827,3.44e-09,11;CL:0000838,5.75e-08,12;CL:0000791,1.41e-07,9;CL:0000789,1.41e-07,9;CL:0002420,1.41e-07,9;CL:0002419,1.41e-07,9;CL:0000790,1.41e-07,9;CL:0000542,5.97e-07,13;CL:0000051,5.97e-07,13;CL:0000624,9.34e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!5.75e-11!29;UBERON:0001004!1.52e-10!42;UBERON:0004119!1.63e-10!130;UBERON:0000925!1.63e-10!130;UBERON:0006595!1.63e-10!130;UBERON:0001007!3.46e-10!128;UBERON:0001555!3.46e-10!128;UBERON:0007026!3.46e-10!128;UBERON:0000065!4.00e-10!41;UBERON:0000072!7.65e-10!27;UBERON:0004921!1.83e-09!126;UBERON:0004185!1.83e-09!126;UBERON:0002193!2.58e-09!48;UBERON:0003408!6.56e-09!24;UBERON:0002370!1.76e-08!23;UBERON:0000974!1.76e-08!23;UBERON:0004807!1.76e-08!23;UBERON:0005058!1.76e-08!23;UBERON:0003351!1.76e-08!23;UBERON:0009113!1.76e-08!23;UBERON:0003295!1.76e-08!23;UBERON:0009722!1.76e-08!23;UBERON:0005562!1.76e-08!23;UBERON:0007690!1.76e-08!23;UBERON:0006562!4.39e-08!24;UBERON:0001557!4.39e-08!24;UBERON:0001042!4.39e-08!24;UBERON:0008814!4.39e-08!24;UBERON:0009145!4.39e-08!24;UBERON:0000077!4.85e-08!97;UBERON:0002390!5.51e-08!45;UBERON:0003061!5.51e-08!45;UBERON:0001041!1.17e-07!92;UBERON:0005057!2.00e-07!51;UBERON:0002405!2.23e-07!70;UBERON:0000063!5.54e-07!35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,5.21e-14,29;UBERON:0005057,5.21e-14,29;UBERON:0004119,2.25e-12,118;UBERON:0000925,2.25e-12,118;UBERON:0006595,2.25e-12,118;UBERON:0000077,2.61e-12,35;UBERON:0000072,2.73e-12,27;UBERON:0001007,2.76e-12,116;UBERON:0001555,2.76e-12,116;UBERON:0007026,2.76e-12,116;UBERON:0002193,3.68e-12,48;UBERON:0002405,3.68e-12,48;UBERON:0001004,1.08e-11,42;UBERON:0003408,1.51e-11,24;UBERON:0004921,2.10e-11,114;UBERON:0000065,3.36e-11,41;UBERON:0002370,4.96e-11,23;UBERON:0000974,4.96e-11,23;UBERON:0004807,4.96e-11,23;UBERON:0005058,4.96e-11,23;UBERON:0003351,4.96e-11,23;UBERON:0009113,4.96e-11,23;UBERON:0003295,4.96e-11,23;UBERON:0009722,4.96e-11,23;UBERON:0005562,4.96e-11,23;UBERON:0007690,4.96e-11,23;UBERON:0002390,1.64e-10,45;UBERON:0003061,1.64e-10,45;UBERON:0006562,3.67e-10,24;UBERON:0001557,3.67e-10,24;UBERON:0001042,3.67e-10,24;UBERON:0008814,3.67e-10,24;UBERON:0009145,3.67e-10,24;UBERON:0001041,1.71e-09,80 | |||
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| |||
|short_description=p1@Ctsw | |||
}} |
Revision as of 08:26, 4 August 2015
Short description: | p1@Ctsw |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ctsw_5end |
Coexpression cluster: | MCL_coexpression_mm9:187 |
Association with transcript: | 0bp_to_ENSMUST00000025844, NM_009985, uc008gdk.2_5end |
EntrezGene: | 13041 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.44e-09 | 11 |
pro-T cell | 3.44e-09 | 11 |
lymphoid lineage restricted progenitor cell | 5.75e-08 | 12 |
mature alpha-beta T cell | 1.41e-07 | 9 |
alpha-beta T cell | 1.41e-07 | 9 |
immature T cell | 1.41e-07 | 9 |
mature T cell | 1.41e-07 | 9 |
immature alpha-beta T cell | 1.41e-07 | 9 |
lymphocyte | 5.97e-07 | 13 |
common lymphoid progenitor | 5.97e-07 | 13 |
CD4-positive, alpha-beta T cell | 9.34e-07 | 8 |