FFCP PHASE1:Mm9::chr7:19511212..19511248,+: Difference between revisions
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{{FFCP|EntrezGene=384569|HGNC=|MCL_coexpression_id=22|UniProt=G3UYX3,D3YVV7|association_with_transcript=0bp_to_ENSMUST00000172835,NM_001029877,uc012fau.1_5end|description=CAGE_peak_2_at_Nova2_5end|id=chr7:19511212..19511248,+|ontology_enrichment_celltype=CL:0000117!8.84e-15!23;CL:0000337!8.84e-15!23;CL:0000540!1.31e-09!33;CL:0000047!1.31e-09!33;CL:0000031!1.31e-09!33;CL:0000404!1.31e-09!33;CL:0002319!6.36e-08!43;CL:0000221!1.24e-07!44;CL:0000133!1.24e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,3.68e-16,23;CL:0000337,3.68e-16,23;CL:0000540,1.26e-08,33;CL:0000047,1.26e-08,33;CL:0000031,1.26e-08,33;CL:0000404,1.26e-08,33;CL:0002319,2.94e-07,43;CL:0000221,8.34e-07,44;CL:0000133,8.34e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.47e-22!52;UBERON:0005068!5.47e-22!52;UBERON:0006241!5.47e-22!52;UBERON:0007135!5.47e-22!52;UBERON:0001017!1.04e-21!73;UBERON:0005743!1.04e-21!73;UBERON:0002346!4.65e-21!71;UBERON:0003075!4.65e-21!71;UBERON:0007284!4.65e-21!71;UBERON:0000073!2.86e-20!75;UBERON:0001016!2.86e-20!75;UBERON:0000955!3.33e-20!50;UBERON:0006238!3.33e-20!50;UBERON:0002616!1.39e-19!49;UBERON:0002020!3.92e-19!34;UBERON:0003056!1.88e-18!49;UBERON:0000033!4.97e-18!63;UBERON:0003080!8.22e-18!40;UBERON:0004121!1.98e-17!102;UBERON:0000924!1.98e-17!102;UBERON:0006601!1.98e-17!102;UBERON:0002780!2.12e-17!39;UBERON:0001890!2.12e-17!39;UBERON:0006240!2.12e-17!39;UBERON:0000025!5.40e-17!114;UBERON:0002791!7.27e-16!29;UBERON:0003528!7.27e-16!29;UBERON:0001893!7.27e-16!29;UBERON:0004111!2.75e-14!122;UBERON:0000468!6.35e-12!333;UBERON:0000956!4.23e-11!21;UBERON:0001869!4.23e-11!21;UBERON:0000203!4.23e-11!21;UBERON:0000922!9.29e-09!328;UBERON:0002619!1.27e-08!17;UBERON:0007811!4.11e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.69e-25,54;UBERON:0001049,1.90e-24,52;UBERON:0005068,1.90e-24,52;UBERON:0006241,1.90e-24,52;UBERON:0007135,1.90e-24,52;UBERON:0002346,9.72e-23,64;UBERON:0003075,9.72e-23,64;UBERON:0007284,9.72e-23,64;UBERON:0001017,8.32e-22,73;UBERON:0000955,4.38e-21,47;UBERON:0006238,4.38e-21,47;UBERON:0002020,5.69e-21,34;UBERON:0002616,2.09e-20,46;UBERON:0001016,2.21e-20,75;UBERON:0003056,3.22e-20,49;UBERON:0003080,1.64e-19,40;UBERON:0010314,2.82e-19,92;UBERON:0002780,4.68e-19,39;UBERON:0001890,4.68e-19,39;UBERON:0006240,4.68e-19,39;UBERON:0000025,5.63e-18,114;UBERON:0003528,2.33e-17,29;UBERON:0002791,2.33e-17,29;UBERON:0001893,2.33e-17,29;UBERON:0010371,4.54e-17,73;UBERON:0004121,3.51e-16,95;UBERON:0000924,3.51e-16,95;UBERON:0006601,3.51e-16,95;UBERON:0004111,2.15e-14,122;UBERON:0000956,4.27e-12,21;UBERON:0001869,4.27e-12,21;UBERON:0000203,4.27e-12,21;UBERON:0002619,2.32e-09,17|phase1_expression=0,0,0,0,0.500895729946347,0,0,0,0,0.234064526321993,0.171217968225505,0.159544317990673,0.513602189793617,0,0.666219523631325,0.404950534779652,0,0.157731082679119,0.137114433605739,0,3.23164502574065,0,0,0.159992422793407,0.45881856213434,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39827672018491,3.07560655828261,1.55543919259427,0.419959264876088,1.43752564364972,0,0,0,0,0,0,38.6424440241832,39.6743234454025,36.7622214033584,0,0,0,0,0,3.89480143673926,10.373894243682,39.7131215141469,44.5519596494579,41.6443423475736,19.4242669394586,23.1911967999194,44.0966877173835,37.6672701101669,33.0918763179608,4.40463523997555,7.2781782708557,8.44835932909339,50.5124482006642,49.128864614494,43.2358097562111,8.09630697104005,8.4414391504752,7.18151764551008,32.4091444021034,25.9116459054367,42.6854730939938,0.075726193333184,0.151143120213571,5.2175607966302,6.88339101585109,0.679971333707751,0,0.649776417447669,0,1.12355536105401,0,0,0,0.563373679106722,0,0,0,0.216491041011214,0,0,1.37020655662872,0.776813650941515,1.7813056687779,3.46970653532272,1.21786191324856,1.15307748628029,1.3565037649736,3.41007250693544,1.88499886994513,0.494389935468748,1.73519228303894,0,1.45590164952668,1.76673214768315,1.93950101254089,0,8.78342391034641,8.79676168616511,0.255457055208591,0,0,0,6.74057877321702,12.3525162761029,50.8900126057101,9.21268897019065,10.2286182932132,10.8049783170971,10.5456820994042,0.81471491080253,0.248813941220186,0.252722758433675,1.05220927943237,1.43132487258974,3.21862946206862,4.14142898552303,3.91832526372859,4.69451844144162,4.74020765053944,3.84177070694888,2.58703370739016,1.5089759505299,0.756424320671277,0.527853372491847,1.31517439456545,0.556094498451196,0.696504333044333,0.823128545631774,1.19420560091096,0,0,0.284163499395593,1.65700618028402,1.87620847984877,1.44049649168812,2.84093682702252,1.57411385397923,1.07986979021165,1.62773761325285,0.804820204198858,2.10177616260905,2.13927804887525,4.76085645829376,3.4859588104718,4.5321996101853,2.85415149878366,4.69722465661301,14.0894265537965,37.0456604565424,0,0,1.2797295032114,0.696710015581316,1.28867461322093,1.61346819698674,0.22237804384487,0.380451252225118,0.474529061544512,0.823494773620054,1.00534083520108,0.397912944082302,1.16978452271472,0.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:384569 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:G3UYX3,uniprot:D3YVV7 | |||
|association_with_transcript=0bp_to_ENSMUST00000172835,NM_001029877,uc012fau.1_5end | |||
|cluster_id=chr7:19511212..19511248,+ | |||
|description=CAGE_peak_2_at_Nova2_5end | |||
|id=chr7:19511212..19511248,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.84e-15!23;CL:0000337!8.84e-15!23;CL:0000540!1.31e-09!33;CL:0000047!1.31e-09!33;CL:0000031!1.31e-09!33;CL:0000404!1.31e-09!33;CL:0002319!6.36e-08!43;CL:0000221!1.24e-07!44;CL:0000133!1.24e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.68e-16,23;CL:0000337,3.68e-16,23;CL:0000540,1.26e-08,33;CL:0000047,1.26e-08,33;CL:0000031,1.26e-08,33;CL:0000404,1.26e-08,33;CL:0002319,2.94e-07,43;CL:0000221,8.34e-07,44;CL:0000133,8.34e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.47e-22!52;UBERON:0005068!5.47e-22!52;UBERON:0006241!5.47e-22!52;UBERON:0007135!5.47e-22!52;UBERON:0001017!1.04e-21!73;UBERON:0005743!1.04e-21!73;UBERON:0002346!4.65e-21!71;UBERON:0003075!4.65e-21!71;UBERON:0007284!4.65e-21!71;UBERON:0000073!2.86e-20!75;UBERON:0001016!2.86e-20!75;UBERON:0000955!3.33e-20!50;UBERON:0006238!3.33e-20!50;UBERON:0002616!1.39e-19!49;UBERON:0002020!3.92e-19!34;UBERON:0003056!1.88e-18!49;UBERON:0000033!4.97e-18!63;UBERON:0003080!8.22e-18!40;UBERON:0004121!1.98e-17!102;UBERON:0000924!1.98e-17!102;UBERON:0006601!1.98e-17!102;UBERON:0002780!2.12e-17!39;UBERON:0001890!2.12e-17!39;UBERON:0006240!2.12e-17!39;UBERON:0000025!5.40e-17!114;UBERON:0002791!7.27e-16!29;UBERON:0003528!7.27e-16!29;UBERON:0001893!7.27e-16!29;UBERON:0004111!2.75e-14!122;UBERON:0000468!6.35e-12!333;UBERON:0000956!4.23e-11!21;UBERON:0001869!4.23e-11!21;UBERON:0000203!4.23e-11!21;UBERON:0000922!9.29e-09!328;UBERON:0002619!1.27e-08!17;UBERON:0007811!4.11e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.69e-25,54;UBERON:0001049,1.90e-24,52;UBERON:0005068,1.90e-24,52;UBERON:0006241,1.90e-24,52;UBERON:0007135,1.90e-24,52;UBERON:0002346,9.72e-23,64;UBERON:0003075,9.72e-23,64;UBERON:0007284,9.72e-23,64;UBERON:0001017,8.32e-22,73;UBERON:0000955,4.38e-21,47;UBERON:0006238,4.38e-21,47;UBERON:0002020,5.69e-21,34;UBERON:0002616,2.09e-20,46;UBERON:0001016,2.21e-20,75;UBERON:0003056,3.22e-20,49;UBERON:0003080,1.64e-19,40;UBERON:0010314,2.82e-19,92;UBERON:0002780,4.68e-19,39;UBERON:0001890,4.68e-19,39;UBERON:0006240,4.68e-19,39;UBERON:0000025,5.63e-18,114;UBERON:0003528,2.33e-17,29;UBERON:0002791,2.33e-17,29;UBERON:0001893,2.33e-17,29;UBERON:0010371,4.54e-17,73;UBERON:0004121,3.51e-16,95;UBERON:0000924,3.51e-16,95;UBERON:0006601,3.51e-16,95;UBERON:0004111,2.15e-14,122;UBERON:0000956,4.27e-12,21;UBERON:0001869,4.27e-12,21;UBERON:0000203,4.27e-12,21;UBERON:0002619,2.32e-09,17 | |||
|phase1_expression=0,0,0,0,0.500895729946347,0,0,0,0,0.234064526321993,0.171217968225505,0.159544317990673,0.513602189793617,0,0.666219523631325,0.404950534779652,0,0.157731082679119,0.137114433605739,0,3.23164502574065,0,0,0.159992422793407,0.45881856213434,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39827672018491,3.07560655828261,1.55543919259427,0.419959264876088,1.43752564364972,0,0,0,0,0,0,38.6424440241832,39.6743234454025,36.7622214033584,0,0,0,0,0,3.89480143673926,10.373894243682,39.7131215141469,44.5519596494579,41.6443423475736,19.4242669394586,23.1911967999194,44.0966877173835,37.6672701101669,33.0918763179608,4.40463523997555,7.2781782708557,8.44835932909339,50.5124482006642,49.128864614494,43.2358097562111,8.09630697104005,8.4414391504752,7.18151764551008,32.4091444021034,25.9116459054367,42.6854730939938,0.075726193333184,0.151143120213571,5.2175607966302,6.88339101585109,0.679971333707751,0,0.649776417447669,0,1.12355536105401,0,0,0,0.563373679106722,0,0,0,0.216491041011214,0,0,1.37020655662872,0.776813650941515,1.7813056687779,3.46970653532272,1.21786191324856,1.15307748628029,1.3565037649736,3.41007250693544,1.88499886994513,0.494389935468748,1.73519228303894,0,1.45590164952668,1.76673214768315,1.93950101254089,0,8.78342391034641,8.79676168616511,0.255457055208591,0,0,0,6.74057877321702,12.3525162761029,50.8900126057101,9.21268897019065,10.2286182932132,10.8049783170971,10.5456820994042,0.81471491080253,0.248813941220186,0.252722758433675,1.05220927943237,1.43132487258974,3.21862946206862,4.14142898552303,3.91832526372859,4.69451844144162,4.74020765053944,3.84177070694888,2.58703370739016,1.5089759505299,0.756424320671277,0.527853372491847,1.31517439456545,0.556094498451196,0.696504333044333,0.823128545631774,1.19420560091096,0,0,0.284163499395593,1.65700618028402,1.87620847984877,1.44049649168812,2.84093682702252,1.57411385397923,1.07986979021165,1.62773761325285,0.804820204198858,2.10177616260905,2.13927804887525,4.76085645829376,3.4859588104718,4.5321996101853,2.85415149878366,4.69722465661301,14.0894265537965,37.0456604565424,0,0,1.2797295032114,0.696710015581316,1.28867461322093,1.61346819698674,0.22237804384487,0.380451252225118,0.474529061544512,0.823494773620054,1.00534083520108,0.397912944082302,1.16978452271472,0.898819408654221,0,0,1.13800740571849,1.82797620175566,0,1.62921062276251,1.55161989734101,2.17421041659988,1.96033265085198,2.80459281161244,2.04098346193787,1.23397163921801,1.48226313543574,1.83529616287703,0.982794975566015,0.449724224769707,1.01430060694251,1.4470629585145,1.78238096246994,2.30156909960649,0.324270453550071,1.09824565275233,5.75072826109418,2.23284568601102,1.24815069245824,0.505157755894224,0.538192240565737,1.92977408545347,7.39012760666419,2.08440552947533,2.11854469374634,1.18821560042632,3.05097322775053,3.01511263395268,6.18913466303636,9.95181604074774,5.04432461139811,6.86540537911202,7.97273843287435,7.04612253277673,4.48980952851328,7.81104916340163,0,0,0,2.20749397043786,4.33486592967038,6.56385444916338,0,2.52470927204373,0.315508219416257,0.780877488593277,0.861693590931196,0.716906393857656,0.668396022247182,0.849229592366497,0.809621403349789,2.33804686329049,1.58115111178609,12.5315313404505,0.99358059645788,1.78065603667255,1.95464351224291,0.989820737835213,1.32745138339963,0.485561272309963,0.604647113929502,2.26326095707078,0.590603785761546,2.45948118355142,0.516856586336442,0.727067458955011,0.712994756769443,0.316036757935816,1.05418608574999,0,1.36175842301515,2.70091641046965,4.78627129996192,4.28674070063185,3.19212420556092,3.74574516964348,2.63278432963394,3.34911444026059,0.938686832254841,1.48282449604674,0.441056796109924,0.32977250588296,0.807322133479528,0.965006798850494,0.358117032009409,0.328281799490123,0.291480836629851,5.19190845629427,0.341741761595705,1.23832120777933,0.925972636848558,0.941842285023455,0.27338845544205,0.228778173206523,0,0,0,0,2.05618395827738,1.42323626988794,1.29606408986162,1.46361807210128,0.655087691238533,0.809186078308924,1.65306911450672,0.26175594198403,0.259229946583586,0,0,0.897099276263873,0.496375471371293,0.388902376688095,0.387479470433193,1.18269287843545,0.234714477291508,0.5208175393758,0.524296722128554,0.483168241652012,0,0.316011120628178,0.608175645870493,0.410843828659309,0.51968329191118,0.537080087002444,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0.15241361331,0.100826185136841,0,0.0962118416403295,0.116876902181569,0.453460767230423,4.43971906748129,5.20340368334959,3.18980771091749,0.772758376128762,1.31377732815827,0.915758121336325,0.643105137237198,0.501572104035363,9.60078132449013,11.5081309126794,12.6037012956667,12.2015759464018,3.42541259885321,8.3093328712867,6.75022500231806,8.55610286126019,5.89085131679466,10.3552062350364,8.30298780673413,9.17757208822371,6.4878770186571,5.83456120963906,8.38452650511929,7.35374033800057,4.66718128383392,5.76898160268904,5.13470735346904,3.03236654116557,4.30914809813408,3.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| |||
|short_description=p2@Nova2 | |||
}} |
Revision as of 17:20, 4 August 2015
Short description: | p2@Nova2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nova2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000172835, NM_001029877, uc012fau.1_5end |
EntrezGene: | 384569 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.68e-16 | 23 |
neuroblast (sensu Vertebrata) | 3.68e-16 | 23 |
neuron | 1.26e-08 | 33 |
neuronal stem cell | 1.26e-08 | 33 |
neuroblast | 1.26e-08 | 33 |
electrically signaling cell | 1.26e-08 | 33 |
neural cell | 2.94e-07 | 43 |
ectodermal cell | 8.34e-07 | 44 |
neurectodermal cell | 8.34e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.69e-25 | 54 |
neural tube | 1.90e-24 | 52 |
neural rod | 1.90e-24 | 52 |
future spinal cord | 1.90e-24 | 52 |
neural keel | 1.90e-24 | 52 |
neurectoderm | 9.72e-23 | 64 |
neural plate | 9.72e-23 | 64 |
presumptive neural plate | 9.72e-23 | 64 |
central nervous system | 8.32e-22 | 73 |
brain | 4.38e-21 | 47 |
future brain | 4.38e-21 | 47 |
gray matter | 5.69e-21 | 34 |
regional part of brain | 2.09e-20 | 46 |
nervous system | 2.21e-20 | 75 |
pre-chordal neural plate | 3.22e-20 | 49 |
anterior neural tube | 1.64e-19 | 40 |
structure with developmental contribution from neural crest | 2.82e-19 | 92 |
regional part of forebrain | 4.68e-19 | 39 |
forebrain | 4.68e-19 | 39 |
future forebrain | 4.68e-19 | 39 |
tube | 5.63e-18 | 114 |
brain grey matter | 2.33e-17 | 29 |
regional part of telencephalon | 2.33e-17 | 29 |
telencephalon | 2.33e-17 | 29 |
ecto-epithelium | 4.54e-17 | 73 |
ectoderm-derived structure | 3.51e-16 | 95 |
ectoderm | 3.51e-16 | 95 |
presumptive ectoderm | 3.51e-16 | 95 |
anatomical conduit | 2.15e-14 | 122 |
cerebral cortex | 4.27e-12 | 21 |
cerebral hemisphere | 4.27e-12 | 21 |
pallium | 4.27e-12 | 21 |
regional part of cerebral cortex | 2.32e-09 | 17 |