FFCP PHASE1:Mm9::chr14:70205331..70205359,-: Difference between revisions
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{{FFCP|EntrezGene=246710|HGNC=|UniProt=Q91V93,Q80TT6|association_with_transcript=0bp_to_ENSMUST00000022665,NM_153514,uc007umy.2,uc011znx.1_5end|description=CAGE_peak_6_at_Rhobtb2_5end|id=chr14:70205331..70205359,-|ontology_enrichment_celltype=CL:0000117!8.10e-12!23;CL:0000337!8.10e-12!23;CL:0002319!1.51e-09!43;CL:0000221!2.80e-09!44;CL:0000133!2.80e-09!44;CL:0000540!6.80e-09!33;CL:0000047!6.80e-09!33;CL:0000031!6.80e-09!33;CL:0000404!6.80e-09!33;CL:0000055!2.32e-07!50;CL:0000393!3.88e-07!39;CL:0000211!3.88e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.48e-15,23;CL:0000337,3.48e-15,23;CL:0002319,8.11e-11,43;CL:0000221,2.44e-10,44;CL:0000133,2.44e-10,44;CL:0000540,6.25e-10,33;CL:0000047,6.25e-10,33;CL:0000031,6.25e-10,33;CL:0000404,6.25e-10,33;CL:0000393,2.35e-08,39;CL:0000211,2.35e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.53e-23!73;UBERON:0005743!9.53e-23!73;UBERON:0000073!1.92e-21!75;UBERON:0001016!1.92e-21!75;UBERON:0001049!1.24e-20!52;UBERON:0005068!1.24e-20!52;UBERON:0006241!1.24e-20!52;UBERON:0007135!1.24e-20!52;UBERON:0000955!1.10e-19!50;UBERON:0006238!1.10e-19!50;UBERON:0002616!3.75e-19!49;UBERON:0000033!5.40e-18!63;UBERON:0002346!1.89e-16!71;UBERON:0003075!1.89e-16!71;UBERON:0007284!1.89e-16!71;UBERON:0002020!1.92e-16!34;UBERON:0002780!2.52e-16!39;UBERON:0001890!2.52e-16!39;UBERON:0006240!2.52e-16!39;UBERON:0004121!2.62e-16!102;UBERON:0000924!2.62e-16!102;UBERON:0006601!2.62e-16!102;UBERON:0003080!2.78e-16!40;UBERON:0003056!4.09e-15!49;UBERON:0002791!1.16e-13!29;UBERON:0003528!1.16e-13!29;UBERON:0001893!1.16e-13!29;UBERON:0007811!1.19e-11!86;UBERON:0000153!6.43e-11!94;UBERON:0000956!2.17e-10!21;UBERON:0001869!2.17e-10!21;UBERON:0000203!2.17e-10!21;UBERON:0000025!4.05e-09!114;UBERON:0004111!7.31e-09!122;UBERON:0002619!5.01e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.24e-25,54;UBERON:0001017,1.44e-25,73;UBERON:0001016,2.56e-24,75;UBERON:0001049,1.22e-23,52;UBERON:0005068,1.22e-23,52;UBERON:0006241,1.22e-23,52;UBERON:0007135,1.22e-23,52;UBERON:0010314,1.96e-21,92;UBERON:0002020,2.84e-21,34;UBERON:0000955,6.49e-20,47;UBERON:0006238,6.49e-20,47;UBERON:0002780,7.66e-20,39;UBERON:0001890,7.66e-20,39;UBERON:0006240,7.66e-20,39;UBERON:0002616,3.34e-19,46;UBERON:0002346,5.18e-19,64;UBERON:0003075,5.18e-19,64;UBERON:0007284,5.18e-19,64;UBERON:0003080,5.23e-19,40;UBERON:0004121,3.54e-18,95;UBERON:0000924,3.54e-18,95;UBERON:0006601,3.54e-18,95;UBERON:0003528,2.65e-17,29;UBERON:0002791,2.65e-17,29;UBERON:0001893,2.65e-17,29;UBERON:0003056,4.19e-16,49;UBERON:0010371,1.58e-15,73;UBERON:0000956,7.96e-13,21;UBERON:0001869,7.96e-13,21;UBERON:0000203,7.96e-13,21;UBERON:0000025,1.75e-12,114;UBERON:0004111,3.51e-12,122;UBERON:0002619,1.69e-09,17|phase1_expression=1.76163731815273,0.348975407639361,0,0.30246421130683,0.500895729946347,0.671517087647559,0,1.29123323441576,0.703943610758334,0,0.171217968225505,0.159544317990673,1.71200729931206,1.22388563386596,0.333109761815663,0.607425802169478,0,1.89277299214943,1.7824876368746,0.42438965179803,2.29616883407888,2.38298282882125,0,0,0.45881856213434,0,0.430761996159075,0.215471232685889,0.190023419456374,0.252030129759931,0,1.27006134691926,0.61506478758457,0,0.866554859253824,0.332469290716985,0.816677425049476,0.418531630736908,0.7813353445238,0.523523743973798,1.17646297606203,0.683045484958446,0,0.503587271902309,0.506884656097573,0,1.56478268869608,0.872100625521786,4.39372365468944,1.1665793944457,0.419959264876088,1.43752564364972,1.67782606057736,2.17608642603403,1.34437519656986,1.02903774414379,0.286533439938757,1.03134418455488,4.04632921719196,4.7609188134483,1.26766280701236,0.338844532069132,0,0.899899717281399,0,1.4209602298922,2.69640099466564,1.53687322128622,3.31806759387129,3.51015439662396,2.94454945891935,2.28520787523043,1.98781686856452,3.06226998037385,2.68367318851062,0.919218786610021,2.20231761998777,2.80912143787413,3.5329502648936,5.14356522147756,1.55528994124096,5.73004707612436,2.23346399201105,0.56276261003168,1.98637722109853,2.65165726926301,3.13217697758026,3.54158947068071,0.454357159999104,0.226714680320357,0,0,0.679971333707751,0,0,0,0.421333260395256,0.852151612890289,0.779358013808606,1.06001872353102,0.563373679106722,0,0,0,0.432982082022428,0,0,1.25602267690966,1.03575153458869,0.742210695324124,0.520455980298408,1.21786191324856,0.461230994512117,0.150722640552623,0.23517741427141,1.0053327306374,0.247194967734374,1.15679485535929,0,0.970601099684455,0.662524555381181,0.484875253135222,0,0.878342391034642,2.30391377494801,0.255457055208591,0.718890747035522,0.599902730993408,1.14363204365758,0.898743836428936,2.74500361691176,4.90051973240171,3.82413504423008,3.3243009452943,1.24672826735736,1.94689515681309,1.01839363850316,0.870848794270651,0.252722758433675,0.420883711772948,0.390361328888111,0.919608417733892,0.720248519221397,1.05493372485001,1.7009124787832,0.768682321709099,1.68663104207512,0.517406741478031,0.646703978798527,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:246710 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q91V93,uniprot:Q80TT6 | |||
|association_with_transcript=0bp_to_ENSMUST00000022665,NM_153514,uc007umy.2,uc011znx.1_5end | |||
|cluster_id=chr14:70205331..70205359,- | |||
|description=CAGE_peak_6_at_Rhobtb2_5end | |||
|id=chr14:70205331..70205359,- | |||
|ontology_enrichment_celltype=CL:0000117!8.10e-12!23;CL:0000337!8.10e-12!23;CL:0002319!1.51e-09!43;CL:0000221!2.80e-09!44;CL:0000133!2.80e-09!44;CL:0000540!6.80e-09!33;CL:0000047!6.80e-09!33;CL:0000031!6.80e-09!33;CL:0000404!6.80e-09!33;CL:0000055!2.32e-07!50;CL:0000393!3.88e-07!39;CL:0000211!3.88e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.48e-15,23;CL:0000337,3.48e-15,23;CL:0002319,8.11e-11,43;CL:0000221,2.44e-10,44;CL:0000133,2.44e-10,44;CL:0000540,6.25e-10,33;CL:0000047,6.25e-10,33;CL:0000031,6.25e-10,33;CL:0000404,6.25e-10,33;CL:0000393,2.35e-08,39;CL:0000211,2.35e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.53e-23!73;UBERON:0005743!9.53e-23!73;UBERON:0000073!1.92e-21!75;UBERON:0001016!1.92e-21!75;UBERON:0001049!1.24e-20!52;UBERON:0005068!1.24e-20!52;UBERON:0006241!1.24e-20!52;UBERON:0007135!1.24e-20!52;UBERON:0000955!1.10e-19!50;UBERON:0006238!1.10e-19!50;UBERON:0002616!3.75e-19!49;UBERON:0000033!5.40e-18!63;UBERON:0002346!1.89e-16!71;UBERON:0003075!1.89e-16!71;UBERON:0007284!1.89e-16!71;UBERON:0002020!1.92e-16!34;UBERON:0002780!2.52e-16!39;UBERON:0001890!2.52e-16!39;UBERON:0006240!2.52e-16!39;UBERON:0004121!2.62e-16!102;UBERON:0000924!2.62e-16!102;UBERON:0006601!2.62e-16!102;UBERON:0003080!2.78e-16!40;UBERON:0003056!4.09e-15!49;UBERON:0002791!1.16e-13!29;UBERON:0003528!1.16e-13!29;UBERON:0001893!1.16e-13!29;UBERON:0007811!1.19e-11!86;UBERON:0000153!6.43e-11!94;UBERON:0000956!2.17e-10!21;UBERON:0001869!2.17e-10!21;UBERON:0000203!2.17e-10!21;UBERON:0000025!4.05e-09!114;UBERON:0004111!7.31e-09!122;UBERON:0002619!5.01e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.24e-25,54;UBERON:0001017,1.44e-25,73;UBERON:0001016,2.56e-24,75;UBERON:0001049,1.22e-23,52;UBERON:0005068,1.22e-23,52;UBERON:0006241,1.22e-23,52;UBERON:0007135,1.22e-23,52;UBERON:0010314,1.96e-21,92;UBERON:0002020,2.84e-21,34;UBERON:0000955,6.49e-20,47;UBERON:0006238,6.49e-20,47;UBERON:0002780,7.66e-20,39;UBERON:0001890,7.66e-20,39;UBERON:0006240,7.66e-20,39;UBERON:0002616,3.34e-19,46;UBERON:0002346,5.18e-19,64;UBERON:0003075,5.18e-19,64;UBERON:0007284,5.18e-19,64;UBERON:0003080,5.23e-19,40;UBERON:0004121,3.54e-18,95;UBERON:0000924,3.54e-18,95;UBERON:0006601,3.54e-18,95;UBERON:0003528,2.65e-17,29;UBERON:0002791,2.65e-17,29;UBERON:0001893,2.65e-17,29;UBERON:0003056,4.19e-16,49;UBERON:0010371,1.58e-15,73;UBERON:0000956,7.96e-13,21;UBERON:0001869,7.96e-13,21;UBERON:0000203,7.96e-13,21;UBERON:0000025,1.75e-12,114;UBERON:0004111,3.51e-12,122;UBERON:0002619,1.69e-09,17 | |||
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| |||
|short_description=p6@Rhobtb2 | |||
}} |
Revision as of 17:47, 4 August 2015
Short description: | p6@Rhobtb2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Rhobtb2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000022665, NM_153514, uc007umy.2, uc011znx.1_5end |
EntrezGene: | 246710 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.48e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.48e-15 | 23 |
neural cell | 8.11e-11 | 43 |
ectodermal cell | 2.44e-10 | 44 |
neurectodermal cell | 2.44e-10 | 44 |
neuron | 6.25e-10 | 33 |
neuronal stem cell | 6.25e-10 | 33 |
neuroblast | 6.25e-10 | 33 |
electrically signaling cell | 6.25e-10 | 33 |
electrically responsive cell | 2.35e-08 | 39 |
electrically active cell | 2.35e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.24e-25 | 54 |
central nervous system | 1.44e-25 | 73 |
nervous system | 2.56e-24 | 75 |
neural tube | 1.22e-23 | 52 |
neural rod | 1.22e-23 | 52 |
future spinal cord | 1.22e-23 | 52 |
neural keel | 1.22e-23 | 52 |
structure with developmental contribution from neural crest | 1.96e-21 | 92 |
gray matter | 2.84e-21 | 34 |
brain | 6.49e-20 | 47 |
future brain | 6.49e-20 | 47 |
regional part of forebrain | 7.66e-20 | 39 |
forebrain | 7.66e-20 | 39 |
future forebrain | 7.66e-20 | 39 |
regional part of brain | 3.34e-19 | 46 |
neurectoderm | 5.18e-19 | 64 |
neural plate | 5.18e-19 | 64 |
presumptive neural plate | 5.18e-19 | 64 |
anterior neural tube | 5.23e-19 | 40 |
ectoderm-derived structure | 3.54e-18 | 95 |
ectoderm | 3.54e-18 | 95 |
presumptive ectoderm | 3.54e-18 | 95 |
brain grey matter | 2.65e-17 | 29 |
regional part of telencephalon | 2.65e-17 | 29 |
telencephalon | 2.65e-17 | 29 |
pre-chordal neural plate | 4.19e-16 | 49 |
ecto-epithelium | 1.58e-15 | 73 |
cerebral cortex | 7.96e-13 | 21 |
cerebral hemisphere | 7.96e-13 | 21 |
pallium | 7.96e-13 | 21 |
tube | 1.75e-12 | 114 |
anatomical conduit | 3.51e-12 | 122 |
regional part of cerebral cortex | 1.69e-09 | 17 |