FFCP PHASE1:Mm9::chr10:93498516..93498532,-: Difference between revisions
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{{FFCP|EntrezGene=215008|HGNC=|UniProt=Q3ZK22|association_with_transcript=0bp_to_ENSMUST00000150704_5end|description=CAGE_peak_3_at_Vezt_5end|id=chr10:93498516..93498532,-|ontology_enrichment_celltype=CL:0000117!3.10e-09!23;CL:0000337!3.10e-09!23|ontology_enrichment_celltype_v019_2=CL:0000117,3.09e-09,23;CL:0000337,3.09e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!7.80e-15!63;UBERON:0000955!5.45e-13!50;UBERON:0006238!5.45e-13!50;UBERON:0001049!1.90e-12!52;UBERON:0005068!1.90e-12!52;UBERON:0006241!1.90e-12!52;UBERON:0007135!1.90e-12!52;UBERON:0002616!2.27e-12!49;UBERON:0003056!5.04e-12!49;UBERON:0001017!5.64e-12!73;UBERON:0005743!5.64e-12!73;UBERON:0000073!1.03e-11!75;UBERON:0001016!1.03e-11!75;UBERON:0004121!1.07e-11!102;UBERON:0000924!1.07e-11!102;UBERON:0006601!1.07e-11!102;UBERON:0004111!1.66e-11!122;UBERON:0002020!2.55e-11!34;UBERON:0000025!6.29e-11!114;UBERON:0002791!8.54e-11!29;UBERON:0003528!8.54e-11!29;UBERON:0001893!8.54e-11!29;UBERON:0002346!8.76e-11!71;UBERON:0003075!8.76e-11!71;UBERON:0007284!8.76e-11!71;UBERON:0003080!1.42e-10!40;UBERON:0000468!3.82e-10!333;UBERON:0002780!5.37e-10!39;UBERON:0001890!5.37e-10!39;UBERON:0006240!5.37e-10!39;UBERON:0000153!4.06e-08!94;UBERON:0000922!1.01e-07!328;UBERON:0000956!1.42e-07!21;UBERON:0001869!1.42e-07!21;UBERON:0000203!1.42e-07!21;UBERON:0007811!3.85e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.30e-13,95;UBERON:0000924,2.30e-13,95;UBERON:0006601,2.30e-13,95;UBERON:0000073,4.18e-13,54;UBERON:0002346,6.70e-13,64;UBERON:0003075,6.70e-13,64;UBERON:0007284,6.70e-13,64;UBERON:0001049,1.89e-12,52;UBERON:0005068,1.89e-12,52;UBERON:0006241,1.89e-12,52;UBERON:0007135,1.89e-12,52;UBERON:0003056,5.01e-12,49;UBERON:0001017,5.60e-12,73;UBERON:0000955,8.73e-12,47;UBERON:0006238,8.73e-12,47;UBERON:0001016,1.03e-11,75;UBERON:0010314,1.08e-11,92;UBERON:0004111,1.74e-11,122;UBERON:0010371,2.08e-11,73;UBERON:0002020,2.54e-11,34;UBERON:0002616,3.51e-11,46;UBERON:0000025,6.25e-11,114;UBERON:0003528,8.49e-11,29;UBERON:0002791,8.49e-11,29;UBERON:0001893,8.49e-11,29;UBERON:0003080,1.41e-10,40;UBERON:0002780,5.34e-10,39;UBERON:0001890,5.34e-10,39;UBERON:0006240,5.34e-10,39;UBERON:0000922,4.69e-08,320;UBERON:0000956,1.42e-07,21;UBERON:0001869,1.42e-07,21;UBERON:0000203,1.42e-07,21|phase1_expression=3.20297694209588,1.74487703819681,0.909998478779072,2.41971369045464,1.00179145989269,1.34303417529512,1.16806320297763,1.67860320474049,0.985521055061667,0.234064526321993,0.34243593645101,1.67521533890206,1.71200729931206,2.36035086531293,2.33176833270964,1.82227740650843,2.79824751251259,1.41957974411207,2.33094537129756,0.42438965179803,4.5072943780067,1.09220046320974,1.04479915655574,1.11994695955385,1.83527424853736,1.14846392823004,1.29228598847722,0.861884930743556,2.28028103347649,2.01624103807945,1.33038306393183,0.635030673459631,0,0,1.44425809875637,2.32728503501889,1.02084678131185,0,0,0.523523743973798,0,0.683045484958446,0,3.9028013572429,4.25783111121961,4.58866880404204,2.34717403304412,1.74420125104357,2.85592037554813,2.52758868796568,4.89952475688769,1.43752564364972,0.671130424230945,0.725362142011344,1.00828139742739,1.54355661621568,2.57880095944881,2.06268836910977,5.05791152148994,9.52183762689659,6.33831403506179,2.03306719241479,1.77858959222228,0.449949858640699,1.97773272513395,0.7104801149461,1.79760066311043,1.15265491596466,6.22137673850866,7.2903206699113,5.46844899513593,2.57085885963423,2.87129103237098,8.20688354740192,8.62609239164127,3.67687514644008,5.50579404996943,5.74593021383345,4.91540906419979,8.83638127792299,11.4359554503012,8.85552729946492,5.862842979029,3.37657566019008,4.88954392885792,5.00868595305235,6.40672563595963,8.38797506213853,2.80186915332781,3.32514864469856,2.6087803983151,1.72084775396277,2.719885334831,3.2382191498269,2.59910566979068,2.68816132258401,3.23022166303029,5.96506129023202,2.59786004602869,2.12003744706204,3.38024207464033,3.84979432242953,2.54805239706646,7.11066703153331,2.16491041011214,1.01343946190039,2.02209778005913,2.16949371466214,3.6251303710604,3.11728492036132,2.77576522825817,3.04465478312141,2.7673859670727,1.95939432718409,2.93971767839262,1.63366568728578,6.67426412882809,3.32578520915797,5.30766331169925,2.91180329905337,1.76673214768315,5.33362778448744,1.86391761218122,9.07620470735796,7.54008144528438,2.55457055208591,0.958520996047362,1.19980546198682,0.762421362438388,9.13722900369418,4.57500602818627,8.67015029578764,8.34356736922927,8.43861009190091,5.194701113989,6.65189178577806,2.95334155165917,3.23458123586242,2.27450482590307,2.94618598241064,2.73252930221678,3.90833577536904,3.24111833649629,4.82255417074288,6.05524842446818,6.02134485338794,5.43470002446427,6.20888089773638,2.15567992932842,5.10586416453112,4.04687585577082,4.16471891612392,4.72680323683516,4.52727816478817,4.93877127379064,2.38841120182192,0,1.54408744268829,2.27330799516474,3.52113813310353,2.57978665979206,4.50155153652537,4.26140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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:215008 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3ZK22 | |||
|association_with_transcript=0bp_to_ENSMUST00000150704_5end | |||
|cluster_id=chr10:93498516..93498532,- | |||
|description=CAGE_peak_3_at_Vezt_5end | |||
|id=chr10:93498516..93498532,- | |||
|ontology_enrichment_celltype=CL:0000117!3.10e-09!23;CL:0000337!3.10e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.09e-09,23;CL:0000337,3.09e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!7.80e-15!63;UBERON:0000955!5.45e-13!50;UBERON:0006238!5.45e-13!50;UBERON:0001049!1.90e-12!52;UBERON:0005068!1.90e-12!52;UBERON:0006241!1.90e-12!52;UBERON:0007135!1.90e-12!52;UBERON:0002616!2.27e-12!49;UBERON:0003056!5.04e-12!49;UBERON:0001017!5.64e-12!73;UBERON:0005743!5.64e-12!73;UBERON:0000073!1.03e-11!75;UBERON:0001016!1.03e-11!75;UBERON:0004121!1.07e-11!102;UBERON:0000924!1.07e-11!102;UBERON:0006601!1.07e-11!102;UBERON:0004111!1.66e-11!122;UBERON:0002020!2.55e-11!34;UBERON:0000025!6.29e-11!114;UBERON:0002791!8.54e-11!29;UBERON:0003528!8.54e-11!29;UBERON:0001893!8.54e-11!29;UBERON:0002346!8.76e-11!71;UBERON:0003075!8.76e-11!71;UBERON:0007284!8.76e-11!71;UBERON:0003080!1.42e-10!40;UBERON:0000468!3.82e-10!333;UBERON:0002780!5.37e-10!39;UBERON:0001890!5.37e-10!39;UBERON:0006240!5.37e-10!39;UBERON:0000153!4.06e-08!94;UBERON:0000922!1.01e-07!328;UBERON:0000956!1.42e-07!21;UBERON:0001869!1.42e-07!21;UBERON:0000203!1.42e-07!21;UBERON:0007811!3.85e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.30e-13,95;UBERON:0000924,2.30e-13,95;UBERON:0006601,2.30e-13,95;UBERON:0000073,4.18e-13,54;UBERON:0002346,6.70e-13,64;UBERON:0003075,6.70e-13,64;UBERON:0007284,6.70e-13,64;UBERON:0001049,1.89e-12,52;UBERON:0005068,1.89e-12,52;UBERON:0006241,1.89e-12,52;UBERON:0007135,1.89e-12,52;UBERON:0003056,5.01e-12,49;UBERON:0001017,5.60e-12,73;UBERON:0000955,8.73e-12,47;UBERON:0006238,8.73e-12,47;UBERON:0001016,1.03e-11,75;UBERON:0010314,1.08e-11,92;UBERON:0004111,1.74e-11,122;UBERON:0010371,2.08e-11,73;UBERON:0002020,2.54e-11,34;UBERON:0002616,3.51e-11,46;UBERON:0000025,6.25e-11,114;UBERON:0003528,8.49e-11,29;UBERON:0002791,8.49e-11,29;UBERON:0001893,8.49e-11,29;UBERON:0003080,1.41e-10,40;UBERON:0002780,5.34e-10,39;UBERON:0001890,5.34e-10,39;UBERON:0006240,5.34e-10,39;UBERON:0000922,4.69e-08,320;UBERON:0000956,1.42e-07,21;UBERON:0001869,1.42e-07,21;UBERON:0000203,1.42e-07,21 | |||
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| |||
|short_description=p3@Vezt | |||
}} |
Revision as of 01:16, 5 August 2015
Short description: | p3@Vezt |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Vezt_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000150704_5end |
EntrezGene: | 215008 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.09e-09 | 23 |
neuroblast (sensu Vertebrata) | 3.09e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.30e-13 | 95 |
ectoderm | 2.30e-13 | 95 |
presumptive ectoderm | 2.30e-13 | 95 |
regional part of nervous system | 4.18e-13 | 54 |
neurectoderm | 6.70e-13 | 64 |
neural plate | 6.70e-13 | 64 |
presumptive neural plate | 6.70e-13 | 64 |
neural tube | 1.89e-12 | 52 |
neural rod | 1.89e-12 | 52 |
future spinal cord | 1.89e-12 | 52 |
neural keel | 1.89e-12 | 52 |
pre-chordal neural plate | 5.01e-12 | 49 |
central nervous system | 5.60e-12 | 73 |
brain | 8.73e-12 | 47 |
future brain | 8.73e-12 | 47 |
nervous system | 1.03e-11 | 75 |
structure with developmental contribution from neural crest | 1.08e-11 | 92 |
anatomical conduit | 1.74e-11 | 122 |
ecto-epithelium | 2.08e-11 | 73 |
gray matter | 2.54e-11 | 34 |
regional part of brain | 3.51e-11 | 46 |
tube | 6.25e-11 | 114 |
brain grey matter | 8.49e-11 | 29 |
regional part of telencephalon | 8.49e-11 | 29 |
telencephalon | 8.49e-11 | 29 |
anterior neural tube | 1.41e-10 | 40 |
regional part of forebrain | 5.34e-10 | 39 |
forebrain | 5.34e-10 | 39 |
future forebrain | 5.34e-10 | 39 |
embryo | 4.69e-08 | 320 |
cerebral cortex | 1.42e-07 | 21 |
cerebral hemisphere | 1.42e-07 | 21 |
pallium | 1.42e-07 | 21 |