FFCP PHASE1:Mm9::chr6:124864204..124864217,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=3540|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:124864204..124864217,-|id=chr6:124864204..124864217,-|ontology_enrichment_celltype=CL:0000055!1.41e-14!50;CL:0002319!5.50e-12!43;CL:0000221!2.14e-11!44;CL:0000133!2.14e-11!44;CL:0002321!2.58e-11!70;CL:0000220!2.58e-11!70;CL:0000393!3.63e-11!39;CL:0000211!3.63e-11!39;CL:0000117!2.25e-10!23;CL:0000337!2.25e-10!23;CL:0000540!2.71e-09!33;CL:0000047!2.71e-09!33;CL:0000031!2.71e-09!33;CL:0000404!2.71e-09!33|ontology_enrichment_celltype_v019_2=CL:0002319,5.35e-12,43;CL:0000221,2.09e-11,44;CL:0000133,2.09e-11,44;CL:0002321,2.52e-11,70;CL:0000393,3.54e-11,39;CL:0000211,3.54e-11,39;CL:0000117,2.20e-10,23;CL:0000337,2.20e-10,23;CL:0000540,2.66e-09,33;CL:0000047,2.66e-09,33;CL:0000031,2.66e-09,33;CL:0000404,2.66e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.14e-19!73;UBERON:0005743!2.14e-19!73;UBERON:0000073!6.56e-18!75;UBERON:0001016!6.56e-18!75;UBERON:0004121!1.77e-15!102;UBERON:0000924!1.77e-15!102;UBERON:0006601!1.77e-15!102;UBERON:0002020!1.93e-15!34;UBERON:0001049!6.69e-15!52;UBERON:0005068!6.69e-15!52;UBERON:0006241!6.69e-15!52;UBERON:0007135!6.69e-15!52;UBERON:0002346!1.09e-14!71;UBERON:0003075!1.09e-14!71;UBERON:0007284!1.09e-14!71;UBERON:0000025!1.24e-13!114;UBERON:0000955!4.22e-13!50;UBERON:0006238!4.22e-13!50;UBERON:0002780!6.55e-13!39;UBERON:0001890!6.55e-13!39;UBERON:0006240!6.55e-13!39;UBERON:0002616!7.22e-13!49;UBERON:0002791!1.08e-12!29;UBERON:0003528!1.08e-12!29;UBERON:0001893!1.08e-12!29;UBERON:0003080!1.68e-12!40;UBERON:0004111!5.23e-12!122;UBERON:0003056!5.44e-12!49;UBERON:0000033!1.37e-11!63;UBERON:0000956!4.32e-10!21;UBERON:0001869!4.32e-10!21;UBERON:0000203!4.32e-10!21;UBERON:0002619!1.27e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.04e-19,73;UBERON:0001016,6.29e-18,75;UBERON:0000073,1.60e-15,54;UBERON:0002020,1.86e-15,34;UBERON:0004121,2.84e-15,95;UBERON:0000924,2.84e-15,95;UBERON:0006601,2.84e-15,95;UBERON:0001049,6.46e-15,52;UBERON:0005068,6.46e-15,52;UBERON:0006241,6.46e-15,52;UBERON:0007135,6.46e-15,52;UBERON:0002346,8.36e-15,64;UBERON:0003075,8.36e-15,64;UBERON:0007284,8.36e-15,64;UBERON:0000025,1.27e-13,114;UBERON:0002780,6.35e-13,39;UBERON:0001890,6.35e-13,39;UBERON:0006240,6.35e-13,39;UBERON:0003528,1.05e-12,29;UBERON:0002791,1.05e-12,29;UBERON:0001893,1.05e-12,29;UBERON:0000955,1.25e-12,47;UBERON:0006238,1.25e-12,47;UBERON:0003080,1.63e-12,40;UBERON:0002616,2.13e-12,46;UBERON:0003056,5.29e-12,49;UBERON:0004111,5.34e-12,122;UBERON:0010314,1.48e-11,92;UBERON:0010371,2.33e-11,73;UBERON:0000956,4.22e-10,21;UBERON:0001869,4.22e-10,21;UBERON:0000203,4.22e-10,21;UBERON:0002619,1.25e-08,17|phase1_expression=1.76163731815273,2.09385244583617,4.09499315450582,2.11724947914781,2.00358291978539,1.17515490338323,4.90586545250604,2.96983643915625,0.84473233291,2.10658073689794,0.34243593645101,0.159544317990673,0.513602189793617,1.04904482902797,0.999329285446988,0.202475267389826,0,1.89277299214943,0.959801035240171,0.42438965179803,6.54833334163237,0.297872853602656,0.261199789138935,6.87967418011649,5.50582274561208,1.14846392823004,0.86152399231815,4.30942465371778,10.8313349090133,5.04060259519861,1.33038306393183,1.90509202037889,0.61506478758457,0,2.3108129580102,3.32469290716985,3.26670970019791,0,0.7813353445238,0,0,1.36609096991689,0.971020706062307,6.79842817068117,7.50189291024408,5.32285581268876,16.4302182313088,23.9827672018491,13.6205433295373,20.4151394027998,17.4983027031703,17.2503077237966,0.503347818173209,2.17608642603403,0.336093799142464,11.5766746216176,12.8940047972441,14.9544906760458,16.3876333296274,22.7466121086974,23.4517619297286,9.82649143000483,22.2323699027785,24.7472422252385,25.7105254267413,26.2877642530057,20.9720077362883,31.890119341689,10.1615820062308,27.8112232963283,9.88527318351495,15.996455126613,17.6694832761291,10.0442455356262,12.4599112323707,14.7075005857603,4.40463523997555,6.12899222808901,8.90917892886212,13.58428763621,22.322985038988,16.1483144872596,10.8881369610539,3.93933827022176,8.25110537994775,23.5702868378934,22.3523538854592,10.8111678578674,1.8931548333296,1.81371744256285,6.37701875143691,26.673140186423,9.51959867190851,25.9057531986152,27.9403859502498,16.1289679355041,9.12888730856387,27.2688516124892,30.6547485431385,26.5004680882755,2.39433813620357,1.28326477414318,2.54805239706646,7.11066703153331,7.57718643539249,3.04031838570118,7.07734223020697,6.73684890342454,0,3.85949561568544,7.28638372417771,4.56698217468212,5.5347719341454,4.6724018571313,2.93971767839262,4.27266410520897,5.93267922562497,6.79616977523585,5.30766331169925,1.94120219936891,1.32504911076236,1.93950101254089,7.45567044872489,5.5628351432194,5.86450779077674,3.0654846625031,2.15667224110656,0,0.635351135365324,3.2953940669061,8.23501085073528,10.0523481690292,6.08385120672968,2.81287003063364,8.51930982694196,3.0825839982874,4.07357455401265,3.1101742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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=3540 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr6:124864204..124864217,- | |||
|description=CAGE_peak_at_chr6:124864204..124864217,- | |||
|id=chr6:124864204..124864217,- | |||
|ontology_enrichment_celltype=CL:0000055!1.41e-14!50;CL:0002319!5.50e-12!43;CL:0000221!2.14e-11!44;CL:0000133!2.14e-11!44;CL:0002321!2.58e-11!70;CL:0000220!2.58e-11!70;CL:0000393!3.63e-11!39;CL:0000211!3.63e-11!39;CL:0000117!2.25e-10!23;CL:0000337!2.25e-10!23;CL:0000540!2.71e-09!33;CL:0000047!2.71e-09!33;CL:0000031!2.71e-09!33;CL:0000404!2.71e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.35e-12,43;CL:0000221,2.09e-11,44;CL:0000133,2.09e-11,44;CL:0002321,2.52e-11,70;CL:0000393,3.54e-11,39;CL:0000211,3.54e-11,39;CL:0000117,2.20e-10,23;CL:0000337,2.20e-10,23;CL:0000540,2.66e-09,33;CL:0000047,2.66e-09,33;CL:0000031,2.66e-09,33;CL:0000404,2.66e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.14e-19!73;UBERON:0005743!2.14e-19!73;UBERON:0000073!6.56e-18!75;UBERON:0001016!6.56e-18!75;UBERON:0004121!1.77e-15!102;UBERON:0000924!1.77e-15!102;UBERON:0006601!1.77e-15!102;UBERON:0002020!1.93e-15!34;UBERON:0001049!6.69e-15!52;UBERON:0005068!6.69e-15!52;UBERON:0006241!6.69e-15!52;UBERON:0007135!6.69e-15!52;UBERON:0002346!1.09e-14!71;UBERON:0003075!1.09e-14!71;UBERON:0007284!1.09e-14!71;UBERON:0000025!1.24e-13!114;UBERON:0000955!4.22e-13!50;UBERON:0006238!4.22e-13!50;UBERON:0002780!6.55e-13!39;UBERON:0001890!6.55e-13!39;UBERON:0006240!6.55e-13!39;UBERON:0002616!7.22e-13!49;UBERON:0002791!1.08e-12!29;UBERON:0003528!1.08e-12!29;UBERON:0001893!1.08e-12!29;UBERON:0003080!1.68e-12!40;UBERON:0004111!5.23e-12!122;UBERON:0003056!5.44e-12!49;UBERON:0000033!1.37e-11!63;UBERON:0000956!4.32e-10!21;UBERON:0001869!4.32e-10!21;UBERON:0000203!4.32e-10!21;UBERON:0002619!1.27e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.04e-19,73;UBERON:0001016,6.29e-18,75;UBERON:0000073,1.60e-15,54;UBERON:0002020,1.86e-15,34;UBERON:0004121,2.84e-15,95;UBERON:0000924,2.84e-15,95;UBERON:0006601,2.84e-15,95;UBERON:0001049,6.46e-15,52;UBERON:0005068,6.46e-15,52;UBERON:0006241,6.46e-15,52;UBERON:0007135,6.46e-15,52;UBERON:0002346,8.36e-15,64;UBERON:0003075,8.36e-15,64;UBERON:0007284,8.36e-15,64;UBERON:0000025,1.27e-13,114;UBERON:0002780,6.35e-13,39;UBERON:0001890,6.35e-13,39;UBERON:0006240,6.35e-13,39;UBERON:0003528,1.05e-12,29;UBERON:0002791,1.05e-12,29;UBERON:0001893,1.05e-12,29;UBERON:0000955,1.25e-12,47;UBERON:0006238,1.25e-12,47;UBERON:0003080,1.63e-12,40;UBERON:0002616,2.13e-12,46;UBERON:0003056,5.29e-12,49;UBERON:0004111,5.34e-12,122;UBERON:0010314,1.48e-11,92;UBERON:0010371,2.33e-11,73;UBERON:0000956,4.22e-10,21;UBERON:0001869,4.22e-10,21;UBERON:0000203,4.22e-10,21;UBERON:0002619,1.25e-08,17 | |||
|phase1_expression=1.76163731815273,2.09385244583617,4.09499315450582,2.11724947914781,2.00358291978539,1.17515490338323,4.90586545250604,2.96983643915625,0.84473233291,2.10658073689794,0.34243593645101,0.159544317990673,0.513602189793617,1.04904482902797,0.999329285446988,0.202475267389826,0,1.89277299214943,0.959801035240171,0.42438965179803,6.54833334163237,0.297872853602656,0.261199789138935,6.87967418011649,5.50582274561208,1.14846392823004,0.86152399231815,4.30942465371778,10.8313349090133,5.04060259519861,1.33038306393183,1.90509202037889,0.61506478758457,0,2.3108129580102,3.32469290716985,3.26670970019791,0,0.7813353445238,0,0,1.36609096991689,0.971020706062307,6.79842817068117,7.50189291024408,5.32285581268876,16.4302182313088,23.9827672018491,13.6205433295373,20.4151394027998,17.4983027031703,17.2503077237966,0.503347818173209,2.17608642603403,0.336093799142464,11.5766746216176,12.8940047972441,14.9544906760458,16.3876333296274,22.7466121086974,23.4517619297286,9.82649143000483,22.2323699027785,24.7472422252385,25.7105254267413,26.2877642530057,20.9720077362883,31.890119341689,10.1615820062308,27.8112232963283,9.88527318351495,15.996455126613,17.6694832761291,10.0442455356262,12.4599112323707,14.7075005857603,4.40463523997555,6.12899222808901,8.90917892886212,13.58428763621,22.322985038988,16.1483144872596,10.8881369610539,3.93933827022176,8.25110537994775,23.5702868378934,22.3523538854592,10.8111678578674,1.8931548333296,1.81371744256285,6.37701875143691,26.673140186423,9.51959867190851,25.9057531986152,27.9403859502498,16.1289679355041,9.12888730856387,27.2688516124892,30.6547485431385,26.5004680882755,2.39433813620357,1.28326477414318,2.54805239706646,7.11066703153331,7.57718643539249,3.04031838570118,7.07734223020697,6.73684890342454,0,3.85949561568544,7.28638372417771,4.56698217468212,5.5347719341454,4.6724018571313,2.93971767839262,4.27266410520897,5.93267922562497,6.79616977523585,5.30766331169925,1.94120219936891,1.32504911076236,1.93950101254089,7.45567044872489,5.5628351432194,5.86450779077674,3.0654846625031,2.15667224110656,0,0.635351135365324,3.2953940669061,8.23501085073528,10.0523481690292,6.08385120672968,2.81287003063364,8.51930982694196,3.0825839982874,4.07357455401265,3.11017426525233,2.0217820674694,5.89237196482127,2.60240885925407,5.0578462975364,10.0834792690996,4.06903008156431,3.81004395247436,4.86832137082429,5.528401749024,3.62184719034622,6.46703978798527,4.72765200419548,4.39877810409872,8.32943783224784,4.17070873838397,5.92028683087683,3.08673204611915,4.37875387000685,0,0.51469581422943,0.284163499395593,2.48550927042602,2.81431271977315,3.78130329068131,4.97163944728941,4.9191057936851,3.70241070929708,3.48800917125612,3.21928081679543,3.50296027101508,2.46839774870221,4.26835406605648,2.91847714365081,3.07019973593198,1.97595103761946,2.54992195644706,6.9395683026162,7.10041825417063,1.32167513193519,0.793351699990633,2.98603550749328,4.18026009348789,4.51036114627327,3.42861991859682,2.66853652613844,2.66315876557583,4.74529061544512,2.47048432086016,3.77002813200404,3.78017296878187,3.70431765526328,5.39291645192533,1.94524244887225,2.58883655230677,9.48339504765408,2.51346727741403,9.01661885384643,4.07302655690629,4.46090720485539,2.31448205638051,2.90888070771584,3.69025369949005,3.92496819603437,3.33172342588861,14.2297261001831,1.16791574001266,1.96558995113203,2.47348323623339,2.23146133527353,2.65294875727659,0.763877555344259,3.74004978686054,2.91843408195064,4.11842119782122,41.6927798929328,4.09355042435354,6.24075346229121,6.56705082662491,5.9201146462231,14.473305640901,3.14080423283228,3.97931964718018,3.42226450528254,4.2436271443797,3.98973422090454,7.20276906999808,10.4739201989846,5.85400943573396,2.99506773801763,7.75126413770712,3.98636921643718,3.60499292374624,4.14443956478149,5.35201516751593,37.6978209848181,13.5976420954677,1.96705709207614,3.86311444826625,2.24770825982909,1.75817529888305,4.91804836130026,1.51482556322624,5.36363973007636,5.46614242015294,4.73931475012158,3.58453196928828,5.56996685205985,3.39691836946599,7.2865926301481,7.89090816360542,4.34816555741176,6.74774764485795,3.69044221541498,4.27357448801413,4.0721739838394,3.79431282836832,9.2921596837974,2.6705869977048,5.13950046840077,2.26326095707078,4.42952839321159,4.30409207121498,1.80899805217755,1.45413491791002,2.49548164869305,2.21225730555071,3.16255825724996,5.15677716240934,6.80879211507576,3.24109969256358,5.95049945400671,6.21577401591618,4.07882537377229,5.52943334566419,6.91105886528908,8.22055362609418,5.16277757740163,1.48282449604674,2.8668691747145,3.95727007059552,2.74489525383039,3.19658502119226,2.86493625607528,2.46211349617592,2.91480836629851,4.26478194624172,0.854354403989263,3.09580301944834,2.59272338317596,0.565105371014073,0.956859594047176,0.686334519619568,1.01987057996313,0.979660166265606,1.52019971184866,13.3653886522116,5.852215881251,4.26970880966382,3.56417624711944,5.43629569637619,5.02233896616208,3.77620169877498,4.21532624199213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| |||
|short_description=p@chr6:124864204..124864217,- | |||
}} |
Latest revision as of 03:39, 5 August 2015
Short description: | p@chr6:124864204..124864217, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:124864204..124864217, - |
Coexpression cluster: | MCL_coexpression_mm9:3540 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.35e-12 | 43 |
ectodermal cell | 2.09e-11 | 44 |
neurectodermal cell | 2.09e-11 | 44 |
embryonic cell | 2.52e-11 | 70 |
electrically responsive cell | 3.54e-11 | 39 |
electrically active cell | 3.54e-11 | 39 |
CNS neuron (sensu Vertebrata) | 2.20e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.20e-10 | 23 |
neuron | 2.66e-09 | 33 |
neuronal stem cell | 2.66e-09 | 33 |
neuroblast | 2.66e-09 | 33 |
electrically signaling cell | 2.66e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.04e-19 | 73 |
nervous system | 6.29e-18 | 75 |
regional part of nervous system | 1.60e-15 | 54 |
gray matter | 1.86e-15 | 34 |
ectoderm-derived structure | 2.84e-15 | 95 |
ectoderm | 2.84e-15 | 95 |
presumptive ectoderm | 2.84e-15 | 95 |
neural tube | 6.46e-15 | 52 |
neural rod | 6.46e-15 | 52 |
future spinal cord | 6.46e-15 | 52 |
neural keel | 6.46e-15 | 52 |
neurectoderm | 8.36e-15 | 64 |
neural plate | 8.36e-15 | 64 |
presumptive neural plate | 8.36e-15 | 64 |
tube | 1.27e-13 | 114 |
regional part of forebrain | 6.35e-13 | 39 |
forebrain | 6.35e-13 | 39 |
future forebrain | 6.35e-13 | 39 |
brain grey matter | 1.05e-12 | 29 |
regional part of telencephalon | 1.05e-12 | 29 |
telencephalon | 1.05e-12 | 29 |
brain | 1.25e-12 | 47 |
future brain | 1.25e-12 | 47 |
anterior neural tube | 1.63e-12 | 40 |
regional part of brain | 2.13e-12 | 46 |
pre-chordal neural plate | 5.29e-12 | 49 |
anatomical conduit | 5.34e-12 | 122 |
structure with developmental contribution from neural crest | 1.48e-11 | 92 |
ecto-epithelium | 2.33e-11 | 73 |
cerebral cortex | 4.22e-10 | 21 |
cerebral hemisphere | 4.22e-10 | 21 |
pallium | 4.22e-10 | 21 |
regional part of cerebral cortex | 1.25e-08 | 17 |