FFCP PHASE1:Mm9::chr9:55889669..55889687,+: Difference between revisions
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{{FFCP|EntrezGene=26611|HGNC=|MCL_coexpression_id=3018|UniProt=|association_with_transcript=0bp_to_ENSMUST00000151585_5end|description=CAGE_peak_1_at_Rcn2_5end|id=chr9:55889669..55889687,+|ontology_enrichment_celltype=CL:0000055!7.27e-23!50;CL:0000221!2.51e-21!44;CL:0000133!2.51e-21!44;CL:0002319!6.17e-21!43;CL:0000393!1.64e-18!39;CL:0000211!1.64e-18!39;CL:0000540!3.38e-16!33;CL:0000047!3.38e-16!33;CL:0000031!3.38e-16!33;CL:0000404!3.38e-16!33;CL:0000117!1.90e-13!23;CL:0000337!1.90e-13!23;CL:0002321!3.35e-12!70;CL:0000220!3.35e-12!70|ontology_enrichment_celltype_v019_2=CL:0000221,2.51e-21,44;CL:0000133,2.51e-21,44;CL:0002319,6.17e-21,43;CL:0000393,1.64e-18,39;CL:0000211,1.64e-18,39;CL:0000540,3.38e-16,33;CL:0000047,3.38e-16,33;CL:0000031,3.38e-16,33;CL:0000404,3.38e-16,33;CL:0000117,1.90e-13,23;CL:0000337,1.90e-13,23;CL:0002321,3.35e-12,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.31e-34!75;UBERON:0001016!1.31e-34!75;UBERON:0001017!1.55e-34!73;UBERON:0005743!1.55e-34!73;UBERON:0004121!7.75e-29!102;UBERON:0000924!7.75e-29!102;UBERON:0006601!7.75e-29!102;UBERON:0002346!2.52e-24!71;UBERON:0003075!2.52e-24!71;UBERON:0007284!2.52e-24!71;UBERON:0001049!2.34e-23!52;UBERON:0005068!2.34e-23!52;UBERON:0006241!2.34e-23!52;UBERON:0007135!2.34e-23!52;UBERON:0000033!5.77e-23!63;UBERON:0000955!1.94e-22!50;UBERON:0006238!1.94e-22!50;UBERON:0002616!8.85e-22!49;UBERON:0003056!7.25e-19!49;UBERON:0003080!1.16e-17!40;UBERON:0002020!3.07e-17!34;UBERON:0002780!4.35e-17!39;UBERON:0001890!4.35e-17!39;UBERON:0006240!4.35e-17!39;UBERON:0000153!1.32e-15!94;UBERON:0002791!1.89e-14!29;UBERON:0003528!1.89e-14!29;UBERON:0001893!1.89e-14!29;UBERON:0007811!2.71e-14!86;UBERON:0000956!2.24e-10!21;UBERON:0001869!2.24e-10!21;UBERON:0000203!2.24e-10!21;UBERON:0002619!4.48e-09!17;UBERON:0004111!4.94e-09!122;UBERON:0000025!3.02e-08!114|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.31e-34,75;UBERON:0001017,1.55e-34,73;UBERON:0004121,7.80e-30,95;UBERON:0000924,7.80e-30,95;UBERON:0006601,7.80e-30,95;UBERON:0002346,6.40e-26,64;UBERON:0003075,6.40e-26,64;UBERON:0007284,6.40e-26,64;UBERON:0000073,8.49e-25,54;UBERON:0001049,2.34e-23,52;UBERON:0005068,2.34e-23,52;UBERON:0006241,2.34e-23,52;UBERON:0007135,2.34e-23,52;UBERON:0010371,2.25e-22,73;UBERON:0000955,2.53e-20,47;UBERON:0006238,2.53e-20,47;UBERON:0010314,3.20e-20,92;UBERON:0002616,1.12e-19,46;UBERON:0003056,7.25e-19,49;UBERON:0003080,1.16e-17,40;UBERON:0002020,3.07e-17,34;UBERON:0002780,4.35e-17,39;UBERON:0001890,4.35e-17,39;UBERON:0006240,4.35e-17,39;UBERON:0003528,1.89e-14,29;UBERON:0002791,1.89e-14,29;UBERON:0001893,1.89e-14,29;UBERON:0000956,2.24e-10,21;UBERON:0001869,2.24e-10,21;UBERON:0000203,2.24e-10,21;UBERON:0002619,4.48e-09,17;UBERON:0004111,4.94e-09,122;UBERON:0000025,3.02e-08,114|phase1_expression=89.5232055315798,10.8182376368202,14.1049764210756,17.845388467103,27.5492651470491,21.32066753281,24.7629399031257,42.7398200591617,80.671937792905,93.1576814761534,39.8937865965427,29.8347874642558,42.9713832127326,39.0769198812918,16.6554880907831,13.3633676477285,9.79386629379405,25.7101664766964,28.5198021899937,25.0389894560838,54.4277056966847,19.5603173865744,26.3811787030325,16.7992043933077,20.4174260149781,13.2073351746455,18.5227658348402,19.6078821744159,23.1828571736776,17.3900789534352,23.7251646401176,24.7661962649256,12.3012957516914,15.8481681015439,24.5523876788583,19.6156881523021,27.1545243828951,11.7188856606334,13.2827008569046,19.8939022710043,10.5881667845583,10.2456822743767,11.1667381197165,111.040993454459,103.809977568783,69.747765821439,168.996530379176,109.884678815745,174.87020145664,173.237040075187,94.3508481754943,113.564525848328,31.3753473327967,50.0499877987828,37.3064117048135,117.567562268428,81.0889635026682,112.416516116482,114.308800385673,170.335095325595,138.809077367853,107.074872133846,136.951398601115,90.4399215867806,98.8866362566974,88.0995342533164,229.793284767616,291.62169373906,90.6247211576095,106.654691282036,90.860383303797,175.675355408339,160.350560730871,98.482602568823,102.554653989513,115.821567112863,170.679615549052,175.697777205218,206.754393762904,139.403806130815,146.471717407458,122.414642080839,205.199504266015,186.274423920486,218.195897825285,141.716349612834,121.727787083233,98.2325079499334,53.3112401065616,62.724394888632,76.5242250172429,39.5794983411438,24.478968013479,16.1910957491345,16.8941868536394,21.0572636935748,31.7404389497759,38.8581135477972,45.462550805502,46.6408238353649,92.8158136328325,102.661181931454,89.181833897326,28.4426681261332,48.0610111044895,57.7660493283225,42.9695778262566,23.1793275829692,37.2870552451927,59.8221820431244,42.156934404171,42.0162360070755,42.2026359978587,47.3269091335235,50.6807327754888,40.0876426341665,22.9891319992968,37.7404321560969,22.9998743506967,50.3094903336443,26.7218237337076,33.4563924663303,35.4144346314432,59.4345017933441,42.0987880695045,16.6047085885584,37.621949094859,45.592607555499,3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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:26611 | |||
|HGNC= | |||
|MCL_coexpression_id=3018 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000151585_5end | |||
|cluster_id=chr9:55889669..55889687,+ | |||
|description=CAGE_peak_1_at_Rcn2_5end | |||
|id=chr9:55889669..55889687,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.27e-23!50;CL:0000221!2.51e-21!44;CL:0000133!2.51e-21!44;CL:0002319!6.17e-21!43;CL:0000393!1.64e-18!39;CL:0000211!1.64e-18!39;CL:0000540!3.38e-16!33;CL:0000047!3.38e-16!33;CL:0000031!3.38e-16!33;CL:0000404!3.38e-16!33;CL:0000117!1.90e-13!23;CL:0000337!1.90e-13!23;CL:0002321!3.35e-12!70;CL:0000220!3.35e-12!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.51e-21,44;CL:0000133,2.51e-21,44;CL:0002319,6.17e-21,43;CL:0000393,1.64e-18,39;CL:0000211,1.64e-18,39;CL:0000540,3.38e-16,33;CL:0000047,3.38e-16,33;CL:0000031,3.38e-16,33;CL:0000404,3.38e-16,33;CL:0000117,1.90e-13,23;CL:0000337,1.90e-13,23;CL:0002321,3.35e-12,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.31e-34!75;UBERON:0001016!1.31e-34!75;UBERON:0001017!1.55e-34!73;UBERON:0005743!1.55e-34!73;UBERON:0004121!7.75e-29!102;UBERON:0000924!7.75e-29!102;UBERON:0006601!7.75e-29!102;UBERON:0002346!2.52e-24!71;UBERON:0003075!2.52e-24!71;UBERON:0007284!2.52e-24!71;UBERON:0001049!2.34e-23!52;UBERON:0005068!2.34e-23!52;UBERON:0006241!2.34e-23!52;UBERON:0007135!2.34e-23!52;UBERON:0000033!5.77e-23!63;UBERON:0000955!1.94e-22!50;UBERON:0006238!1.94e-22!50;UBERON:0002616!8.85e-22!49;UBERON:0003056!7.25e-19!49;UBERON:0003080!1.16e-17!40;UBERON:0002020!3.07e-17!34;UBERON:0002780!4.35e-17!39;UBERON:0001890!4.35e-17!39;UBERON:0006240!4.35e-17!39;UBERON:0000153!1.32e-15!94;UBERON:0002791!1.89e-14!29;UBERON:0003528!1.89e-14!29;UBERON:0001893!1.89e-14!29;UBERON:0007811!2.71e-14!86;UBERON:0000956!2.24e-10!21;UBERON:0001869!2.24e-10!21;UBERON:0000203!2.24e-10!21;UBERON:0002619!4.48e-09!17;UBERON:0004111!4.94e-09!122;UBERON:0000025!3.02e-08!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.31e-34,75;UBERON:0001017,1.55e-34,73;UBERON:0004121,7.80e-30,95;UBERON:0000924,7.80e-30,95;UBERON:0006601,7.80e-30,95;UBERON:0002346,6.40e-26,64;UBERON:0003075,6.40e-26,64;UBERON:0007284,6.40e-26,64;UBERON:0000073,8.49e-25,54;UBERON:0001049,2.34e-23,52;UBERON:0005068,2.34e-23,52;UBERON:0006241,2.34e-23,52;UBERON:0007135,2.34e-23,52;UBERON:0010371,2.25e-22,73;UBERON:0000955,2.53e-20,47;UBERON:0006238,2.53e-20,47;UBERON:0010314,3.20e-20,92;UBERON:0002616,1.12e-19,46;UBERON:0003056,7.25e-19,49;UBERON:0003080,1.16e-17,40;UBERON:0002020,3.07e-17,34;UBERON:0002780,4.35e-17,39;UBERON:0001890,4.35e-17,39;UBERON:0006240,4.35e-17,39;UBERON:0003528,1.89e-14,29;UBERON:0002791,1.89e-14,29;UBERON:0001893,1.89e-14,29;UBERON:0000956,2.24e-10,21;UBERON:0001869,2.24e-10,21;UBERON:0000203,2.24e-10,21;UBERON:0002619,4.48e-09,17;UBERON:0004111,4.94e-09,122;UBERON:0000025,3.02e-08,114 | |||
|phase1_expression=89.5232055315798,10.8182376368202,14.1049764210756,17.845388467103,27.5492651470491,21.32066753281,24.7629399031257,42.7398200591617,80.671937792905,93.1576814761534,39.8937865965427,29.8347874642558,42.9713832127326,39.0769198812918,16.6554880907831,13.3633676477285,9.79386629379405,25.7101664766964,28.5198021899937,25.0389894560838,54.4277056966847,19.5603173865744,26.3811787030325,16.7992043933077,20.4174260149781,13.2073351746455,18.5227658348402,19.6078821744159,23.1828571736776,17.3900789534352,23.7251646401176,24.7661962649256,12.3012957516914,15.8481681015439,24.5523876788583,19.6156881523021,27.1545243828951,11.7188856606334,13.2827008569046,19.8939022710043,10.5881667845583,10.2456822743767,11.1667381197165,111.040993454459,103.809977568783,69.747765821439,168.996530379176,109.884678815745,174.87020145664,173.237040075187,94.3508481754943,113.564525848328,31.3753473327967,50.0499877987828,37.3064117048135,117.567562268428,81.0889635026682,112.416516116482,114.308800385673,170.335095325595,138.809077367853,107.074872133846,136.951398601115,90.4399215867806,98.8866362566974,88.0995342533164,229.793284767616,291.62169373906,90.6247211576095,106.654691282036,90.860383303797,175.675355408339,160.350560730871,98.482602568823,102.554653989513,115.821567112863,170.679615549052,175.697777205218,206.754393762904,139.403806130815,146.471717407458,122.414642080839,205.199504266015,186.274423920486,218.195897825285,141.716349612834,121.727787083233,98.2325079499334,53.3112401065616,62.724394888632,76.5242250172429,39.5794983411438,24.478968013479,16.1910957491345,16.8941868536394,21.0572636935748,31.7404389497759,38.8581135477972,45.462550805502,46.6408238353649,92.8158136328325,102.661181931454,89.181833897326,28.4426681261332,48.0610111044895,57.7660493283225,42.9695778262566,23.1793275829692,37.2870552451927,59.8221820431244,42.156934404171,42.0162360070755,42.2026359978587,47.3269091335235,50.6807327754888,40.0876426341665,22.9891319992968,37.7404321560969,22.9998743506967,50.3094903336443,26.7218237337076,33.4563924663303,35.4144346314432,59.4345017933441,42.0987880695045,16.6047085885584,37.621949094859,45.592607555499,32.1487674494854,136.159691218984,86.4676139327204,67.0994240282696,81.6974304903699,76.7146371990992,141.71144638962,113.082160358227,59.1686703970338,55.9831367745419,168.566079875261,62.9221149100557,67.7927507835686,100.697121741861,81.9282690614339,60.5833367699575,67.8323896538739,60.8540171353036,58.0950692270319,50.9645640355861,83.8559492508756,89.2580698392107,78.1222991287933,75.8417234199409,58.11187508815,55.3720944770245,58.6479088762639,63.0938625814623,46.3460703626735,39.1168818814367,20.1756084570871,55.9239585845855,48.5468944160869,41.9544603204165,52.5573312999167,34.0402120923009,32.7046279321242,30.9270146518042,38.3630964001455,30.9428157272999,28.7979737348591,27.9084688934462,32.1843173897047,34.0645970701024,42.1536221358817,37.8462100904248,89.7938080368823,71.5187056036027,18.1730330641089,10.3135720998782,62.7067456573588,58.5236413088305,54.5109361392455,43.1602742693953,40.4728039797664,30.0556489257843,16.6085171540579,30.963403488114,23.1228392096248,26.0632978373908,28.6597208065107,20.6728463990471,20.1008386383466,19.1175622324193,91.6095961603385,54.7250375400601,65.3704866903866,59.0588850751411,50.6215991507503,49.4457530226746,44.5185221354771,35.5740456630841,32.4987366631646,34.1810144063387,9.19003143970162,25.3604560688463,19.6558995113203,16.6397963164792,17.6488305607998,18.0882869814313,24.9533334745791,21.28951417136,19.7804976665543,16.748246204473,33.0666875012915,28.6548529704748,23.0907878104775,20.9640468696103,18.298536179235,11.5786445127208,50.8071272958163,75.7965647081939,70.8897647522813,49.0563297890294,51.397164375182,55.6120774706828,62.3674339121356,49.7590802037387,49.9703406816625,49.6080904813256,42.893332768864,42.7683251408076,41.271710665949,43.250068515872,52.7769493787453,33.72215239676,39.8329061145419,30.6289788398253,169.059771257145,158.118565212882,20.9836730082145,37.6181681534516,79.8235795123129,93.3148598868966,95.4325651956299,75.5141401530064,84.4406974772274,76.1475867821959,75.6996012132052,86.215478083837,103.565397821989,163.231228742278,43.1497859033137,63.0352236982083,51.9609400337908,49.9859472606782,19.9117707509944,51.712275501011,41.4183273041709,28.8565772026524,29.2348873951965,34.7401717176638,30.7529668870183,30.173299546633,29.2327850275471,20.2263525078922,21.0837217149998,20.6271086496374,111.323751081489,81.2075534081209,66.4903634643358,74.1606141209309,79.9804453726654,79.0173861977173,76.0216475181799,53.5858310441695,46.2303264885509,66.7271023221033,363.871856790687,27.8657767471101,31.0011699256139,31.7849114371381,36.766681952966,34.4695889464629,17.488850197791,200.25932617135,14.3531539870196,57.1691624258126,35.1869602002452,18.0833718724503,9.97867862363484,14.6418030852174,63.401954387708,60.8788817607912,61.3607883691642,36.2774834845743,84.7780462797443,56.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| |||
|short_description=p1@Rcn2 | |||
}} |
Revision as of 08:22, 5 August 2015
Short description: | p1@Rcn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rcn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3018 |
Association with transcript: | 0bp_to_ENSMUST00000151585_5end |
EntrezGene: | 26611 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.51e-21 | 44 |
neurectodermal cell | 2.51e-21 | 44 |
neural cell | 6.17e-21 | 43 |
electrically responsive cell | 1.64e-18 | 39 |
electrically active cell | 1.64e-18 | 39 |
neuron | 3.38e-16 | 33 |
neuronal stem cell | 3.38e-16 | 33 |
neuroblast | 3.38e-16 | 33 |
electrically signaling cell | 3.38e-16 | 33 |
CNS neuron (sensu Vertebrata) | 1.90e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.90e-13 | 23 |
embryonic cell | 3.35e-12 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.31e-34 | 75 |
central nervous system | 1.55e-34 | 73 |
ectoderm-derived structure | 7.80e-30 | 95 |
ectoderm | 7.80e-30 | 95 |
presumptive ectoderm | 7.80e-30 | 95 |
neurectoderm | 6.40e-26 | 64 |
neural plate | 6.40e-26 | 64 |
presumptive neural plate | 6.40e-26 | 64 |
regional part of nervous system | 8.49e-25 | 54 |
neural tube | 2.34e-23 | 52 |
neural rod | 2.34e-23 | 52 |
future spinal cord | 2.34e-23 | 52 |
neural keel | 2.34e-23 | 52 |
ecto-epithelium | 2.25e-22 | 73 |
brain | 2.53e-20 | 47 |
future brain | 2.53e-20 | 47 |
structure with developmental contribution from neural crest | 3.20e-20 | 92 |
regional part of brain | 1.12e-19 | 46 |
pre-chordal neural plate | 7.25e-19 | 49 |
anterior neural tube | 1.16e-17 | 40 |
gray matter | 3.07e-17 | 34 |
regional part of forebrain | 4.35e-17 | 39 |
forebrain | 4.35e-17 | 39 |
future forebrain | 4.35e-17 | 39 |
brain grey matter | 1.89e-14 | 29 |
regional part of telencephalon | 1.89e-14 | 29 |
telencephalon | 1.89e-14 | 29 |
cerebral cortex | 2.24e-10 | 21 |
cerebral hemisphere | 2.24e-10 | 21 |
pallium | 2.24e-10 | 21 |
regional part of cerebral cortex | 4.48e-09 | 17 |
anatomical conduit | 4.94e-09 | 122 |
tube | 3.02e-08 | 114 |