FFCP PHASE1:Mm9::chr1:34858553..34858621,+: Difference between revisions
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{{FFCP|EntrezGene=226970|HGNC=|MCL_coexpression_id=1|UniProt=E0CYG8,Q3TQN9,Q7TNR9,E0CY60|association_with_transcript=0bp_to_ENSMUST00000159059,ENSMUST00000160855,ENSMUST00000162760,NM_183019,uc007apg.1,uc007aph.1,uc007api.1_5end|description=CAGE_peak_1_at_Arhgef4_5end|id=chr1:34858553..34858621,+|ontology_enrichment_celltype=CL:0000117!1.61e-12!23;CL:0000337!1.61e-12!23;CL:0000540!1.40e-07!33;CL:0000047!1.40e-07!33;CL:0000031!1.40e-07!33;CL:0000404!1.40e-07!33;CL:0000393!3.97e-07!39;CL:0000211!3.97e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.11e-13,23;CL:0000337,4.11e-13,23;CL:0000540,2.52e-07,33;CL:0000047,2.52e-07,33;CL:0000031,2.52e-07,33;CL:0000404,2.52e-07,33;CL:0000393,5.70e-07,39;CL:0000211,5.70e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!4.51e-19!52;UBERON:0005068!4.51e-19!52;UBERON:0006241!4.51e-19!52;UBERON:0007135!4.51e-19!52;UBERON:0000955!5.03e-18!50;UBERON:0006238!5.03e-18!50;UBERON:0002346!1.16e-17!71;UBERON:0003075!1.16e-17!71;UBERON:0007284!1.16e-17!71;UBERON:0002616!1.65e-17!49;UBERON:0001017!4.81e-16!73;UBERON:0005743!4.81e-16!73;UBERON:0002020!1.20e-15!34;UBERON:0000033!1.63e-15!63;UBERON:0000073!9.31e-15!75;UBERON:0001016!9.31e-15!75;UBERON:0003080!1.16e-14!40;UBERON:0007811!1.81e-14!86;UBERON:0002780!5.02e-14!39;UBERON:0001890!5.02e-14!39;UBERON:0006240!5.02e-14!39;UBERON:0003056!1.65e-13!49;UBERON:0000153!5.13e-13!94;UBERON:0002791!5.81e-13!29;UBERON:0003528!5.81e-13!29;UBERON:0001893!5.81e-13!29;UBERON:0004121!3.42e-11!102;UBERON:0000924!3.42e-11!102;UBERON:0006601!3.42e-11!102;UBERON:0000956!1.09e-08!21;UBERON:0001869!1.09e-08!21;UBERON:0000203!1.09e-08!21;UBERON:0002021!2.39e-07!10;UBERON:0000411!2.39e-07!10;UBERON:0001950!2.39e-07!10;UBERON:0002619!5.65e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.66e-22,54;UBERON:0001049,1.83e-20,52;UBERON:0005068,1.83e-20,52;UBERON:0006241,1.83e-20,52;UBERON:0007135,1.83e-20,52;UBERON:0000955,2.51e-17,47;UBERON:0006238,2.51e-17,47;UBERON:0002346,3.22e-17,64;UBERON:0003075,3.22e-17,64;UBERON:0007284,3.22e-17,64;UBERON:0002020,6.11e-17,34;UBERON:0002616,8.56e-17,46;UBERON:0001017,1.15e-16,73;UBERON:0003080,7.56e-16,40;UBERON:0001016,2.33e-15,75;UBERON:0002780,3.61e-15,39;UBERON:0001890,3.61e-15,39;UBERON:0006240,3.61e-15,39;UBERON:0003056,1.43e-14,49;UBERON:0003528,4.30e-14,29;UBERON:0002791,4.30e-14,29;UBERON:0001893,4.30e-14,29;UBERON:0010371,2.86e-13,73;UBERON:0004121,1.55e-10,95;UBERON:0000924,1.55e-10,95;UBERON:0006601,1.55e-10,95;UBERON:0000956,1.49e-09,21;UBERON:0001869,1.49e-09,21;UBERON:0000203,1.49e-09,21;UBERON:0010314,4.68e-09,92;UBERON:0002619,9.82e-08,17;UBERON:0002021,1.16e-07,10;UBERON:0000411,1.16e-07,10;UBERON:0001950,1.16e-07,10|phase1_expression=3.04282809499109,0,0,0,0,0.33575854382378,0.233612640595526,12.7832090207161,4.36445038670167,3.97909694747389,2.91070545983358,2.47293692885543,11.4704489053908,12.1514359362406,0.666219523631325,1.01237633694913,0,2.68142840554502,2.4680598049033,2.97072756258621,14.4573593256819,3.07801948722744,3.39559725880616,0.47997726838022,0.45881856213434,0,0.430761996159075,0.215471232685889,0.380046838912748,0.252030129759931,0.443461021310609,3.17515336729816,2.46025915033828,0,2.59966457776147,2.49351968037739,3.26670970019791,25.5304294749514,14.8453715459522,23.5585684788209,27.0586484494267,23.9065919735456,26.2175590636823,6.42073771675444,6.69087746048796,3.30384153891027,1.56478268869608,0.436050312760893,0,0.194429899074283,0.55994568650145,0,2.01339127269284,4.35217285206807,4.03312558970957,1.02903774414379,0.286533439938757,1.03134418455488,16.9945827122062,17.4567023159771,14.5781222806421,0.677689064138264,0.889294796111139,2.6996991518442,3.9554654502679,3.5524005747305,1.49800055259202,0.384218305321555,6.947204024668,8.77538599155989,8.62332341540666,36.5633260036869,25.6207507503872,9.0643191419066,7.09256485534949,16.5459381589804,77.0811166995721,56.0547414193974,64.6683505008785,15.8263545276233,16.3762882048313,13.5437476344758,78.7296057183894,59.6528366633581,55.0073691996516,20.6240009831567,28.0472211174233,27.0279196446686,0.37863096666592,0.377857800533928,0.579728977403356,0,0,0,0,0,4.49422144421606,0.340860645156116,0.259786004602869,1.41335829804136,1.97180787687353,0,0,0,0.216491041011214,0.253359865475099,0,2.39786147410026,1.55362730188303,7.86743337043571,1.56136794089522,3.04465478312141,1.84492397804847,3.76806601381556,4.58595957829249,5.02666365318702,0,0.433798070759735,1.76922110389975,1.13236794963186,1.76673214768315,1.45462575940567,1.86391761218122,7.31951992528868,5.44561437714983,1.02182822083437,1.67741174308288,1.79970819298022,1.52484272487678,72.4986694719342,62.6775825861518,30.0313901549746,80.8283088894086,84.8975318336697,65.4532340362614,55.9732357583764,0.916554274652847,3.6078021476927,8.08712826987759,1.26265113531884,1.43132487258974,2.29902104433473,1.26043490863744,1.80845781402858,1.97305847538851,2.0498195245576,3.5606655332697,3.62184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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:226970 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E0CYG8,uniprot:Q3TQN9,uniprot:Q7TNR9,uniprot:E0CY60 | |||
|association_with_transcript=0bp_to_ENSMUST00000159059,ENSMUST00000160855,ENSMUST00000162760,NM_183019,uc007apg.1,uc007aph.1,uc007api.1_5end | |||
|cluster_id=chr1:34858553..34858621,+ | |||
|description=CAGE_peak_1_at_Arhgef4_5end | |||
|id=chr1:34858553..34858621,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.61e-12!23;CL:0000337!1.61e-12!23;CL:0000540!1.40e-07!33;CL:0000047!1.40e-07!33;CL:0000031!1.40e-07!33;CL:0000404!1.40e-07!33;CL:0000393!3.97e-07!39;CL:0000211!3.97e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.11e-13,23;CL:0000337,4.11e-13,23;CL:0000540,2.52e-07,33;CL:0000047,2.52e-07,33;CL:0000031,2.52e-07,33;CL:0000404,2.52e-07,33;CL:0000393,5.70e-07,39;CL:0000211,5.70e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.51e-19!52;UBERON:0005068!4.51e-19!52;UBERON:0006241!4.51e-19!52;UBERON:0007135!4.51e-19!52;UBERON:0000955!5.03e-18!50;UBERON:0006238!5.03e-18!50;UBERON:0002346!1.16e-17!71;UBERON:0003075!1.16e-17!71;UBERON:0007284!1.16e-17!71;UBERON:0002616!1.65e-17!49;UBERON:0001017!4.81e-16!73;UBERON:0005743!4.81e-16!73;UBERON:0002020!1.20e-15!34;UBERON:0000033!1.63e-15!63;UBERON:0000073!9.31e-15!75;UBERON:0001016!9.31e-15!75;UBERON:0003080!1.16e-14!40;UBERON:0007811!1.81e-14!86;UBERON:0002780!5.02e-14!39;UBERON:0001890!5.02e-14!39;UBERON:0006240!5.02e-14!39;UBERON:0003056!1.65e-13!49;UBERON:0000153!5.13e-13!94;UBERON:0002791!5.81e-13!29;UBERON:0003528!5.81e-13!29;UBERON:0001893!5.81e-13!29;UBERON:0004121!3.42e-11!102;UBERON:0000924!3.42e-11!102;UBERON:0006601!3.42e-11!102;UBERON:0000956!1.09e-08!21;UBERON:0001869!1.09e-08!21;UBERON:0000203!1.09e-08!21;UBERON:0002021!2.39e-07!10;UBERON:0000411!2.39e-07!10;UBERON:0001950!2.39e-07!10;UBERON:0002619!5.65e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.66e-22,54;UBERON:0001049,1.83e-20,52;UBERON:0005068,1.83e-20,52;UBERON:0006241,1.83e-20,52;UBERON:0007135,1.83e-20,52;UBERON:0000955,2.51e-17,47;UBERON:0006238,2.51e-17,47;UBERON:0002346,3.22e-17,64;UBERON:0003075,3.22e-17,64;UBERON:0007284,3.22e-17,64;UBERON:0002020,6.11e-17,34;UBERON:0002616,8.56e-17,46;UBERON:0001017,1.15e-16,73;UBERON:0003080,7.56e-16,40;UBERON:0001016,2.33e-15,75;UBERON:0002780,3.61e-15,39;UBERON:0001890,3.61e-15,39;UBERON:0006240,3.61e-15,39;UBERON:0003056,1.43e-14,49;UBERON:0003528,4.30e-14,29;UBERON:0002791,4.30e-14,29;UBERON:0001893,4.30e-14,29;UBERON:0010371,2.86e-13,73;UBERON:0004121,1.55e-10,95;UBERON:0000924,1.55e-10,95;UBERON:0006601,1.55e-10,95;UBERON:0000956,1.49e-09,21;UBERON:0001869,1.49e-09,21;UBERON:0000203,1.49e-09,21;UBERON:0010314,4.68e-09,92;UBERON:0002619,9.82e-08,17;UBERON:0002021,1.16e-07,10;UBERON:0000411,1.16e-07,10;UBERON:0001950,1.16e-07,10 | |||
|phase1_expression=3.04282809499109,0,0,0,0,0.33575854382378,0.233612640595526,12.7832090207161,4.36445038670167,3.97909694747389,2.91070545983358,2.47293692885543,11.4704489053908,12.1514359362406,0.666219523631325,1.01237633694913,0,2.68142840554502,2.4680598049033,2.97072756258621,14.4573593256819,3.07801948722744,3.39559725880616,0.47997726838022,0.45881856213434,0,0.430761996159075,0.215471232685889,0.380046838912748,0.252030129759931,0.443461021310609,3.17515336729816,2.46025915033828,0,2.59966457776147,2.49351968037739,3.26670970019791,25.5304294749514,14.8453715459522,23.5585684788209,27.0586484494267,23.9065919735456,26.2175590636823,6.42073771675444,6.69087746048796,3.30384153891027,1.56478268869608,0.436050312760893,0,0.194429899074283,0.55994568650145,0,2.01339127269284,4.35217285206807,4.03312558970957,1.02903774414379,0.286533439938757,1.03134418455488,16.9945827122062,17.4567023159771,14.5781222806421,0.677689064138264,0.889294796111139,2.6996991518442,3.9554654502679,3.5524005747305,1.49800055259202,0.384218305321555,6.947204024668,8.77538599155989,8.62332341540666,36.5633260036869,25.6207507503872,9.0643191419066,7.09256485534949,16.5459381589804,77.0811166995721,56.0547414193974,64.6683505008785,15.8263545276233,16.3762882048313,13.5437476344758,78.7296057183894,59.6528366633581,55.0073691996516,20.6240009831567,28.0472211174233,27.0279196446686,0.37863096666592,0.377857800533928,0.579728977403356,0,0,0,0,0,4.49422144421606,0.340860645156116,0.259786004602869,1.41335829804136,1.97180787687353,0,0,0,0.216491041011214,0.253359865475099,0,2.39786147410026,1.55362730188303,7.86743337043571,1.56136794089522,3.04465478312141,1.84492397804847,3.76806601381556,4.58595957829249,5.02666365318702,0,0.433798070759735,1.76922110389975,1.13236794963186,1.76673214768315,1.45462575940567,1.86391761218122,7.31951992528868,5.44561437714983,1.02182822083437,1.67741174308288,1.79970819298022,1.52484272487678,72.4986694719342,62.6775825861518,30.0313901549746,80.8283088894086,84.8975318336697,65.4532340362614,55.9732357583764,0.916554274652847,3.6078021476927,8.08712826987759,1.26265113531884,1.43132487258974,2.29902104433473,1.26043490863744,1.80845781402858,1.97305847538851,2.0498195245576,3.5606655332697,3.62184719034622,0.646703978798527,2.08016688184601,2.11141348996739,2.6303487891309,1.11218899690239,0.696504333044333,0.411564272815887,1.59227413454795,0.702213187313235,0.772043721344145,2.55747149456033,1.03562886267751,0.703578179943289,0,0.710234206755631,0.787056926989615,0.462801338662135,0.930135779001631,0,0.700592054203017,0.329119699826961,0.656669856316381,0.162137619091711,0.146199987425332,0.439100230582101,0.402619256281115,106.406713973448,16.7734518178234,0.330418782983798,0.528901133327089,0.853153002140936,0.928946687441754,0.515469845288373,0.403367049246685,0.444756087689741,1.14135375667535,0,0.329397909448022,1.50801125280162,0.397912944082302,1.36474860983384,0.898819408654221,0.432276099749388,0.796565093017469,0.569003702859245,0.913988100877831,0,0.407302655690628,0.775809948670503,0.911765658574141,0.569128834118316,0.295220295959204,0.627994911365499,0.370191491765402,0,0.333690211432188,0.786235980452812,0.224862112384854,0.405720242777006,0.482354319504834,0.50925170356284,0.863088412352432,1.13494658742525,0.549122826376163,0,0,0,0,0,0.482443521363367,0.554259570499814,0.757965647081939,0.488894929326078,0.678980343100753,0.234690248288502,0.837531287209079,0.238043640886014,1.36593553500459,1.26108115284953,1.55025282754142,2.23236676120482,1.14704320301017,1.89953480052485,1.3018415272336,1.50791283939272,2.17562273527484,0,1.93155722413313,92.7982410129437,80.172793629067,3.11476396215683,0.504941854408746,0.631016438832513,0.780877488593277,1.07711698866399,0.716906393857656,0.668396022247182,0.566153061577665,0,2.04579100537918,2.37172666767914,17.0300297703558,1.56134093729095,1.6025904330053,1.30309567482861,1.15479086080775,3.98235415019888,1.45668381692989,0.302323556964751,0.377210159511796,0.885905678642318,0.614870295887855,0.775284879504663,1.09060118843252,1.78248689192361,5.05658812697306,4.21674434299995,3.09406629744561,7.83011093233712,1.44048875225048,1.55230420539305,1.50035924522115,2.30542303734956,3.21063871683727,4.44282355625727,4.56697423671899,0.23467170806371,0.21183207086382,0.220528398054962,0.16488625294148,0.484393280087717,0.904693873922338,0.716234064018819,0,0.582961673259701,113.294859528421,2.05045056957423,2.27025554759545,1.85194527369712,1.31857919903284,0.683471138605126,1.83022538565218,3.39956859987711,2.37917468950219,3.31679937130617,10.5013767981662,1.89801596148681,2.23651413839534,0.648032044930808,1.04544148007234,0.87345025498471,2.15782954215713,4.46328660916814,13.3495530411855,0.648074866458964,0.621339313086926,0,3.73791365109947,2.48187735685646,3.88902376688095,4.39143399824286,5.57555214119568,4.92900402312167,9.76532886329626,5.55754525456268,1.69108884578204,1.15212002503146,1.89606672376907,1.82452693761148,1.33524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| |||
|short_description=p1@Arhgef4 | |||
}} |
Revision as of 14:23, 5 August 2015
Short description: | p1@Arhgef4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Arhgef4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000159059, ENSMUST00000160855, ENSMUST00000162760, NM_183019, uc007apg.1, uc007aph.1, uc007api.1_5end |
EntrezGene: | 226970 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.11e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.11e-13 | 23 |
neuron | 2.52e-07 | 33 |
neuronal stem cell | 2.52e-07 | 33 |
neuroblast | 2.52e-07 | 33 |
electrically signaling cell | 2.52e-07 | 33 |
electrically responsive cell | 5.70e-07 | 39 |
electrically active cell | 5.70e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 8.66e-22 | 54 |
neural tube | 1.83e-20 | 52 |
neural rod | 1.83e-20 | 52 |
future spinal cord | 1.83e-20 | 52 |
neural keel | 1.83e-20 | 52 |
brain | 2.51e-17 | 47 |
future brain | 2.51e-17 | 47 |
neurectoderm | 3.22e-17 | 64 |
neural plate | 3.22e-17 | 64 |
presumptive neural plate | 3.22e-17 | 64 |
gray matter | 6.11e-17 | 34 |
regional part of brain | 8.56e-17 | 46 |
central nervous system | 1.15e-16 | 73 |
anterior neural tube | 7.56e-16 | 40 |
nervous system | 2.33e-15 | 75 |
regional part of forebrain | 3.61e-15 | 39 |
forebrain | 3.61e-15 | 39 |
future forebrain | 3.61e-15 | 39 |
pre-chordal neural plate | 1.43e-14 | 49 |
brain grey matter | 4.30e-14 | 29 |
regional part of telencephalon | 4.30e-14 | 29 |
telencephalon | 4.30e-14 | 29 |
ecto-epithelium | 2.86e-13 | 73 |
ectoderm-derived structure | 1.55e-10 | 95 |
ectoderm | 1.55e-10 | 95 |
presumptive ectoderm | 1.55e-10 | 95 |
cerebral cortex | 1.49e-09 | 21 |
cerebral hemisphere | 1.49e-09 | 21 |
pallium | 1.49e-09 | 21 |
structure with developmental contribution from neural crest | 4.68e-09 | 92 |
regional part of cerebral cortex | 9.82e-08 | 17 |
occipital lobe | 1.16e-07 | 10 |
visual cortex | 1.16e-07 | 10 |
neocortex | 1.16e-07 | 10 |