FFCP PHASE1:Mm9::chr18:24688704..24688746,-: Difference between revisions
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{{FFCP|EntrezGene=225283|HGNC=|MCL_coexpression_id=1|UniProt=Q8VDS4|association_with_transcript=0bp_to_ENSMUST00000046206,NM_144861,uc008egu.1_5end|description=CAGE_peak_2_at_Rprd1a_5end|id=chr18:24688704..24688746,-|ontology_enrichment_celltype=CL:0000117!3.48e-09!23;CL:0000337!3.48e-09!23;CL:0000540!9.68e-08!33;CL:0000047!9.68e-08!33;CL:0000031!9.68e-08!33;CL:0000404!9.68e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.48e-09,23;CL:0000337,3.48e-09,23;CL:0000540,9.67e-08,33;CL:0000047,9.67e-08,33;CL:0000031,9.67e-08,33;CL:0000404,9.67e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!2.26e-22!86;UBERON:0000033!9.22e-22!63;UBERON:0000153!1.81e-21!94;UBERON:0003056!2.72e-18!49;UBERON:0000955!1.49e-17!50;UBERON:0006238!1.49e-17!50;UBERON:0002616!7.24e-17!49;UBERON:0001049!1.61e-16!52;UBERON:0005068!1.61e-16!52;UBERON:0006241!1.61e-16!52;UBERON:0007135!1.61e-16!52;UBERON:0002346!1.14e-15!71;UBERON:0003075!1.14e-15!71;UBERON:0007284!1.14e-15!71;UBERON:0001017!5.10e-15!73;UBERON:0005743!5.10e-15!73;UBERON:0003080!1.63e-14!40;UBERON:0002780!6.60e-14!39;UBERON:0001890!6.60e-14!39;UBERON:0006240!6.60e-14!39;UBERON:0000073!7.04e-14!75;UBERON:0001016!7.04e-14!75;UBERON:0002020!3.31e-13!34;UBERON:0004121!7.41e-13!102;UBERON:0000924!7.41e-13!102;UBERON:0006601!7.41e-13!102;UBERON:0002791!1.89e-12!29;UBERON:0003528!1.89e-12!29;UBERON:0001893!1.89e-12!29;UBERON:0000956!9.44e-09!21;UBERON:0001869!9.44e-09!21;UBERON:0000203!9.44e-09!21;UBERON:0000468!4.65e-08!333;UBERON:0002021!6.89e-07!10;UBERON:0000411!6.89e-07!10;UBERON:0001950!6.89e-07!10;UBERON:0002619!9.01e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.92e-20,64;UBERON:0003075,7.92e-20,64;UBERON:0007284,7.92e-20,64;UBERON:0003056,2.68e-18,49;UBERON:0010371,4.49e-18,73;UBERON:0000073,7.73e-18,54;UBERON:0010314,1.21e-17,92;UBERON:0001049,1.60e-16,52;UBERON:0005068,1.60e-16,52;UBERON:0006241,1.60e-16,52;UBERON:0007135,1.60e-16,52;UBERON:0004121,1.16e-15,95;UBERON:0000924,1.16e-15,95;UBERON:0006601,1.16e-15,95;UBERON:0000955,1.32e-15,47;UBERON:0006238,1.32e-15,47;UBERON:0001017,4.89e-15,73;UBERON:0002616,6.12e-15,46;UBERON:0003080,1.62e-14,40;UBERON:0002780,6.52e-14,39;UBERON:0001890,6.52e-14,39;UBERON:0006240,6.52e-14,39;UBERON:0001016,6.77e-14,75;UBERON:0002020,3.27e-13,34;UBERON:0003528,1.87e-12,29;UBERON:0002791,1.87e-12,29;UBERON:0001893,1.87e-12,29;UBERON:0000956,9.33e-09,21;UBERON:0001869,9.33e-09,21;UBERON:0000203,9.33e-09,21;UBERON:0002021,6.89e-07,10;UBERON:0000411,6.89e-07,10;UBERON:0001950,6.89e-07,10;UBERON:0002619,8.91e-07,17|phase1_expression=12.3314612270691,3.83872948403297,3.63999391511629,2.11724947914781,6.01074875935617,4.53274034162102,2.80335168714631,4.13194635013044,2.111830832275,1.87251621057595,11.4716038711088,9.6524312384357,6.33442700745461,5.59490575481583,2.6648780945253,3.44207954562704,3.49780939064073,7.72882305127682,10.8320402548534,4.2438965179803,11.9060606211498,3.67376519443276,2.08959831311148,2.23989391910769,3.67054849707472,3.44539178469012,3.01533397311352,2.15471232685889,1.33016393619462,2.26827116783938,1.55211357458713,3.81018404075779,4.30545351309199,0,3.75507105676657,1.82858109894342,3.06254034393554,6.27797446105362,2.3440060335714,7.85285615960697,6.47054636834116,7.5135003345429,10.1957174136542,1.38486499773135,2.02753862439029,2.0190142737785,1.56478268869608,2.39827672018491,0.439372365468944,3.69416808241138,1.81982348112971,0,5.5368259999053,0,4.03312558970957,1.28629718017973,1.14613375975503,2.57836046138721,11.9366711907163,8.99284664762456,15.8457850876545,0.677689064138264,1.77858959222228,0.449949858640699,0.988866362566974,1.4209602298922,2.09720077362883,1.53687322128622,16.5903379693564,15.3906769698127,17.8776217148675,7.9982275633065,11.2642955885323,17.6386750869534,13.5142114135713,12.8690630125403,34.1359231098105,37.9231394113008,39.9376986466233,12.1335384711778,12.1678565991205,14.5855743755893,26.2432019061298,27.5753678915523,33.6156145108982,10.9012576625257,13.3829379951157,15.2847545576746,3.86203585999239,2.56943304363071,1.44932244350839,0.860423876981386,2.03991400112325,4.31762553310254,3.24888208723835,1.79210754838934,7.3031098468511,2.04516387093669,1.55871602761721,3.5333957451034,11.4083170019111,2.56652954828636,7.64415719119937,14.2213340630666,4.76280290224671,5.82727690592727,2.52762222507392,5.36664234679582,7.25026074212081,4.89859058913922,4.16364784238726,2.74018930480927,4.15107895060905,3.46662073271032,4.70354828542819,3.51866455723091,2.96633961281249,3.47038456607788,7.96149496754887,7.44127509758082,6.62524555381181,6.30337829075789,1.86391761218122,36.8903804234549,28.4847521266299,5.10914110417183,0.838705871541442,1.19980546198682,1.01656181658452,32.953940669061,43.0050566649509,26.0104508873629,45.889620530761,53.7002460393694,35.1161795305657,42.3449696606847,6.72139801412087,13.43595282589,36.6447999728828,14.3100462002802,14.4433691688601,12.4147136394075,12.2442248267637,17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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:225283 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8VDS4 | |||
|association_with_transcript=0bp_to_ENSMUST00000046206,NM_144861,uc008egu.1_5end | |||
|cluster_id=chr18:24688704..24688746,- | |||
|description=CAGE_peak_2_at_Rprd1a_5end | |||
|id=chr18:24688704..24688746,- | |||
|ontology_enrichment_celltype=CL:0000117!3.48e-09!23;CL:0000337!3.48e-09!23;CL:0000540!9.68e-08!33;CL:0000047!9.68e-08!33;CL:0000031!9.68e-08!33;CL:0000404!9.68e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.48e-09,23;CL:0000337,3.48e-09,23;CL:0000540,9.67e-08,33;CL:0000047,9.67e-08,33;CL:0000031,9.67e-08,33;CL:0000404,9.67e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!2.26e-22!86;UBERON:0000033!9.22e-22!63;UBERON:0000153!1.81e-21!94;UBERON:0003056!2.72e-18!49;UBERON:0000955!1.49e-17!50;UBERON:0006238!1.49e-17!50;UBERON:0002616!7.24e-17!49;UBERON:0001049!1.61e-16!52;UBERON:0005068!1.61e-16!52;UBERON:0006241!1.61e-16!52;UBERON:0007135!1.61e-16!52;UBERON:0002346!1.14e-15!71;UBERON:0003075!1.14e-15!71;UBERON:0007284!1.14e-15!71;UBERON:0001017!5.10e-15!73;UBERON:0005743!5.10e-15!73;UBERON:0003080!1.63e-14!40;UBERON:0002780!6.60e-14!39;UBERON:0001890!6.60e-14!39;UBERON:0006240!6.60e-14!39;UBERON:0000073!7.04e-14!75;UBERON:0001016!7.04e-14!75;UBERON:0002020!3.31e-13!34;UBERON:0004121!7.41e-13!102;UBERON:0000924!7.41e-13!102;UBERON:0006601!7.41e-13!102;UBERON:0002791!1.89e-12!29;UBERON:0003528!1.89e-12!29;UBERON:0001893!1.89e-12!29;UBERON:0000956!9.44e-09!21;UBERON:0001869!9.44e-09!21;UBERON:0000203!9.44e-09!21;UBERON:0000468!4.65e-08!333;UBERON:0002021!6.89e-07!10;UBERON:0000411!6.89e-07!10;UBERON:0001950!6.89e-07!10;UBERON:0002619!9.01e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.92e-20,64;UBERON:0003075,7.92e-20,64;UBERON:0007284,7.92e-20,64;UBERON:0003056,2.68e-18,49;UBERON:0010371,4.49e-18,73;UBERON:0000073,7.73e-18,54;UBERON:0010314,1.21e-17,92;UBERON:0001049,1.60e-16,52;UBERON:0005068,1.60e-16,52;UBERON:0006241,1.60e-16,52;UBERON:0007135,1.60e-16,52;UBERON:0004121,1.16e-15,95;UBERON:0000924,1.16e-15,95;UBERON:0006601,1.16e-15,95;UBERON:0000955,1.32e-15,47;UBERON:0006238,1.32e-15,47;UBERON:0001017,4.89e-15,73;UBERON:0002616,6.12e-15,46;UBERON:0003080,1.62e-14,40;UBERON:0002780,6.52e-14,39;UBERON:0001890,6.52e-14,39;UBERON:0006240,6.52e-14,39;UBERON:0001016,6.77e-14,75;UBERON:0002020,3.27e-13,34;UBERON:0003528,1.87e-12,29;UBERON:0002791,1.87e-12,29;UBERON:0001893,1.87e-12,29;UBERON:0000956,9.33e-09,21;UBERON:0001869,9.33e-09,21;UBERON:0000203,9.33e-09,21;UBERON:0002021,6.89e-07,10;UBERON:0000411,6.89e-07,10;UBERON:0001950,6.89e-07,10;UBERON:0002619,8.91e-07,17 | |||
|phase1_expression=12.3314612270691,3.83872948403297,3.63999391511629,2.11724947914781,6.01074875935617,4.53274034162102,2.80335168714631,4.13194635013044,2.111830832275,1.87251621057595,11.4716038711088,9.6524312384357,6.33442700745461,5.59490575481583,2.6648780945253,3.44207954562704,3.49780939064073,7.72882305127682,10.8320402548534,4.2438965179803,11.9060606211498,3.67376519443276,2.08959831311148,2.23989391910769,3.67054849707472,3.44539178469012,3.01533397311352,2.15471232685889,1.33016393619462,2.26827116783938,1.55211357458713,3.81018404075779,4.30545351309199,0,3.75507105676657,1.82858109894342,3.06254034393554,6.27797446105362,2.3440060335714,7.85285615960697,6.47054636834116,7.5135003345429,10.1957174136542,1.38486499773135,2.02753862439029,2.0190142737785,1.56478268869608,2.39827672018491,0.439372365468944,3.69416808241138,1.81982348112971,0,5.5368259999053,0,4.03312558970957,1.28629718017973,1.14613375975503,2.57836046138721,11.9366711907163,8.99284664762456,15.8457850876545,0.677689064138264,1.77858959222228,0.449949858640699,0.988866362566974,1.4209602298922,2.09720077362883,1.53687322128622,16.5903379693564,15.3906769698127,17.8776217148675,7.9982275633065,11.2642955885323,17.6386750869534,13.5142114135713,12.8690630125403,34.1359231098105,37.9231394113008,39.9376986466233,12.1335384711778,12.1678565991205,14.5855743755893,26.2432019061298,27.5753678915523,33.6156145108982,10.9012576625257,13.3829379951157,15.2847545576746,3.86203585999239,2.56943304363071,1.44932244350839,0.860423876981386,2.03991400112325,4.31762553310254,3.24888208723835,1.79210754838934,7.3031098468511,2.04516387093669,1.55871602761721,3.5333957451034,11.4083170019111,2.56652954828636,7.64415719119937,14.2213340630666,4.76280290224671,5.82727690592727,2.52762222507392,5.36664234679582,7.25026074212081,4.89859058913922,4.16364784238726,2.74018930480927,4.15107895060905,3.46662073271032,4.70354828542819,3.51866455723091,2.96633961281249,3.47038456607788,7.96149496754887,7.44127509758082,6.62524555381181,6.30337829075789,1.86391761218122,36.8903804234549,28.4847521266299,5.10914110417183,0.838705871541442,1.19980546198682,1.01656181658452,32.953940669061,43.0050566649509,26.0104508873629,45.889620530761,53.7002460393694,35.1161795305657,42.3449696606847,6.72139801412087,13.43595282589,36.6447999728828,14.3100462002802,14.4433691688601,12.4147136394075,12.2442248267637,17.9338733224501,17.6894897793452,14.3487366719032,16.9600121453109,16.815719098036,11.6406716183735,12.8592134514117,8.97350733236139,7.01426343768239,6.39508673218875,4.87553033131033,5.96768195583036,12.7381930763836,0.702213187313235,1.80143534980301,1.98914449576915,12.4275463521301,9.85009451920604,11.1638478105829,13.7311946639422,12.3961466000864,8.33042409591843,15.8123082430277,10.4626626545851,13.3112490298573,11.5191894939436,12.3125598059321,9.97146357414026,10.9649990568999,14.9294078397914,13.4206418760372,43.5300193527743,23.2564423977183,3.63460661282178,2.3800550999719,11.3042772783674,9.28946687441754,7.7320476793256,6.25218926332362,5.78182913996663,4.94586627892654,3.32170343081158,3.12928013975621,4.27269854960458,5.57078121715222,4.874102177978,3.59527763461689,2.59365659849633,2.38969527905241,7.58671603812327,13.0243304375091,12.3978509240388,9.36796108088446,9.50367187121366,11.3620028222316,8.47369597465048,8.70899873079653,8.00693511991011,6.16985819609003,3.55743152504579,4.17112764290235,4.52085688760367,3.82265591054251,4.05720242777006,2.894125917029,4.32863948028414,2.01387296215567,2.2698931748505,1.37280706594041,8.62609239164127,1.86070473834252,4.05648975048929,3.03094653536534,3.76734568396016,2.8946611281802,6.28160846566456,13.8328730592454,8.14824882210129,9.33597971763535,8.91822943496308,7.87279409976534,4.76087281772027,4.68320754858717,6.9359463406724,7.30833475840957,7.17546458958692,7.04612253277673,7.08008425650172,8.38964539772767,0,1.08781136763742,3.93411418415229,3.31124095565679,32.2706685875462,37.8593747692816,2.95082901678016,10.856249869788,7.88770548540642,7.80877488593277,7.53981892064796,7.88597033243422,6.46116154838943,10.4738316391868,8.50102473517278,7.89090816360542,6.7198922250909,43.0570564005221,8.37446502728785,6.05423052468668,7.65568708961808,7.25868541079156,2.65490276679926,8.98288353773431,10.2790009368015,5.46954731292105,3.2483208216885,7.68587869859819,6.20227903603731,7.27067458955011,8.19943970284859,4.42451461110142,14.7586052004998,7.21948802737308,17.0219802876894,13.324520958317,7.76152102696527,9.21649250635847,11.8817956540323,10.8804978737263,11.1893334009442,4.26250928760439,4.69343416127421,2.33015277950202,5.51320995137405,7.4198813823666,8.07322133479528,7.72005439080395,5.49112782414428,9.35603128546849,3.20628920292836,35.6016579860179,3.93003025835061,7.42992724667601,7.03739204004904,3.39063222608444,4.78429797023588,5.26189798375002,2.20971958992012,2.51912614182584,3.17859939750175,2.86401185404534,12.9697757368265,9.75933442208874,5.18425635944646,3.76358932826044,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| |||
|short_description=p2@Rprd1a | |||
}} |
Revision as of 14:39, 5 August 2015
Short description: | p2@Rprd1a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rprd1a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000046206, NM_144861, uc008egu.1_5end |
EntrezGene: | 225283 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.48e-09 | 23 |
neuroblast (sensu Vertebrata) | 3.48e-09 | 23 |
neuron | 9.67e-08 | 33 |
neuronal stem cell | 9.67e-08 | 33 |
neuroblast | 9.67e-08 | 33 |
electrically signaling cell | 9.67e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 7.92e-20 | 64 |
neural plate | 7.92e-20 | 64 |
presumptive neural plate | 7.92e-20 | 64 |
pre-chordal neural plate | 2.68e-18 | 49 |
ecto-epithelium | 4.49e-18 | 73 |
regional part of nervous system | 7.73e-18 | 54 |
structure with developmental contribution from neural crest | 1.21e-17 | 92 |
neural tube | 1.60e-16 | 52 |
neural rod | 1.60e-16 | 52 |
future spinal cord | 1.60e-16 | 52 |
neural keel | 1.60e-16 | 52 |
ectoderm-derived structure | 1.16e-15 | 95 |
ectoderm | 1.16e-15 | 95 |
presumptive ectoderm | 1.16e-15 | 95 |
brain | 1.32e-15 | 47 |
future brain | 1.32e-15 | 47 |
central nervous system | 4.89e-15 | 73 |
regional part of brain | 6.12e-15 | 46 |
anterior neural tube | 1.62e-14 | 40 |
regional part of forebrain | 6.52e-14 | 39 |
forebrain | 6.52e-14 | 39 |
future forebrain | 6.52e-14 | 39 |
nervous system | 6.77e-14 | 75 |
gray matter | 3.27e-13 | 34 |
brain grey matter | 1.87e-12 | 29 |
regional part of telencephalon | 1.87e-12 | 29 |
telencephalon | 1.87e-12 | 29 |
cerebral cortex | 9.33e-09 | 21 |
cerebral hemisphere | 9.33e-09 | 21 |
pallium | 9.33e-09 | 21 |
occipital lobe | 6.89e-07 | 10 |
visual cortex | 6.89e-07 | 10 |
neocortex | 6.89e-07 | 10 |
regional part of cerebral cortex | 8.91e-07 | 17 |