FFCP PHASE1:Mm9::chr6:36665592..36665664,-: Difference between revisions
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{{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=471|UniProt=|association_with_transcript=-58bp_to_uc009biz.1_5end|description=CAGE_peak_2_at_uc009biz.1_5end|id=chr6:36665592..36665664,-|ontology_enrichment_celltype=CL:0000540!1.91e-15!33;CL:0000047!1.91e-15!33;CL:0000031!1.91e-15!33;CL:0000404!1.91e-15!33;CL:0000117!1.71e-13!23;CL:0000337!1.71e-13!23;CL:0000221!3.48e-12!44;CL:0000133!3.48e-12!44;CL:0000393!4.36e-12!39;CL:0000211!4.36e-12!39;CL:0002319!1.32e-11!43;CL:0000055!8.09e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,5.22e-17,33;CL:0000047,5.22e-17,33;CL:0000031,5.22e-17,33;CL:0000404,5.22e-17,33;CL:0000117,3.40e-15,23;CL:0000337,3.40e-15,23;CL:0000221,4.81e-14,44;CL:0000133,4.81e-14,44;CL:0002319,2.24e-13,43;CL:0000393,2.51e-13,39;CL:0000211,2.51e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.72e-22!73;UBERON:0005743!6.72e-22!73;UBERON:0000073!1.37e-20!75;UBERON:0001016!1.37e-20!75;UBERON:0004121!4.34e-18!102;UBERON:0000924!4.34e-18!102;UBERON:0006601!4.34e-18!102;UBERON:0001049!4.38e-15!52;UBERON:0005068!4.38e-15!52;UBERON:0006241!4.38e-15!52;UBERON:0007135!4.38e-15!52;UBERON:0002020!7.96e-15!34;UBERON:0002346!1.52e-14!71;UBERON:0003075!1.52e-14!71;UBERON:0007284!1.52e-14!71;UBERON:0000955!1.75e-13!50;UBERON:0006238!1.75e-13!50;UBERON:0002616!1.87e-13!49;UBERON:0000033!3.15e-13!63;UBERON:0002780!5.80e-13!39;UBERON:0001890!5.80e-13!39;UBERON:0006240!5.80e-13!39;UBERON:0003080!7.02e-13!40;UBERON:0003056!4.48e-12!49;UBERON:0002791!1.58e-11!29;UBERON:0003528!1.58e-11!29;UBERON:0001893!1.58e-11!29;UBERON:0000468!2.14e-08!333;UBERON:0000956!5.51e-08!21;UBERON:0001869!5.51e-08!21;UBERON:0000203!5.51e-08!21;UBERON:0002021!6.96e-08!10;UBERON:0000411!6.96e-08!10;UBERON:0001950!6.96e-08!10;UBERON:0000153!2.92e-07!94;UBERON:0000922!3.85e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.18e-23,73;UBERON:0001016,2.91e-22,75;UBERON:0000073,4.96e-18,54;UBERON:0002020,3.12e-17,34;UBERON:0004121,2.65e-16,95;UBERON:0000924,2.65e-16,95;UBERON:0006601,2.65e-16,95;UBERON:0001049,2.86e-16,52;UBERON:0005068,2.86e-16,52;UBERON:0006241,2.86e-16,52;UBERON:0007135,2.86e-16,52;UBERON:0002780,1.07e-14,39;UBERON:0001890,1.07e-14,39;UBERON:0006240,1.07e-14,39;UBERON:0003080,1.33e-14,40;UBERON:0002346,7.31e-14,64;UBERON:0003075,7.31e-14,64;UBERON:0007284,7.31e-14,64;UBERON:0003528,1.97e-13,29;UBERON:0002791,1.97e-13,29;UBERON:0001893,1.97e-13,29;UBERON:0010314,6.85e-13,92;UBERON:0000955,1.23e-12,47;UBERON:0006238,1.23e-12,47;UBERON:0002616,1.36e-12,46;UBERON:0010371,2.83e-12,73;UBERON:0003056,3.78e-12,49;UBERON:0000956,2.34e-09,21;UBERON:0001869,2.34e-09,21;UBERON:0000203,2.34e-09,21;UBERON:0002021,8.68e-09,10;UBERON:0000411,8.68e-09,10;UBERON:0001950,8.68e-09,10;UBERON:0002619,2.14e-07,17|phase1_expression=69.184301949271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,1.56478268869608,0,0,0,1.67983705950435,1.43752564364972,0,0,0,0.514518872071894,6.30373567865265,0,5.46254444320914,7.93486468908049,5.70448263155561,0,1.77858959222228,0,0,0,3.29560121570245,3.45796474789399,7.05089363697648,5.8052553482627,6.94072372459561,23.1377297367081,19.8781686856452,3.79721477566358,1.91690942036473,7.35375029288017,15.4162233399144,7.02280359468532,9.06278546211836,8.04506355154182,7.41049913179518,11.4600941522487,7.81712397203867,7.87867654044352,12.071061574368,35.9446874277875,11.6744778255264,15.2847545576746,0,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0,0,0.70667914902068,14.3660288172214,0,0,0,0,0,0,0.45673551887624,0,0.148442139064825,2.94925055502431,2.74018930480927,1.84492397804847,1.65794904607885,1.41106448562846,0.628332956648377,0.494389935468748,0,0,1.45590164952668,1.10420759230197,3.39412677194655,0,0.878342391034642,1.46612694769419,0,0,0,0,1.3481157546434,2.74500361691176,2.26177833803156,3.65031072403781,2.55715457330331,2.28566849015516,2.27137768294861,5.49932564791708,1.24406970610093,0,0.420883711772948,1.04096354370163,0.459804208866946,0.900310649026746,3.0140963567143,0.612328492361951,1.5373646434182,1.68663104207512,1.55222022443409,1.07783996466421,1.51284864134255,0.703804496655795,1.97276159184817,6.67313398141435,2.089512999133,5.14455341019859,5.9710280045548,0,0,0,0.207125772535502,3.51789089971644,4.68161359798639,1.42046841351126,2.55793501271625,4.47374627373397,3.95307706075693,0.536546802799238,0.467061369468678,1.6455984991348,1.97000956894914,0.324275238183423,0.292399974850665,0,0.134206418760372,1.05144974282064,2.88132914661996,0,0.264450566663544,4.26576501070468,3.94802342162745,1.03093969057675,0.605050573870028,1.11189021922435,0.190225626112559,0,0.823494773620054,1.50801125280162,0.397912944082302,1.16978452271472,0,0.432276099749388,0,0.758671603812327,3.65595240351132,1.1270773567308,5.49858585182348,0.969762435838129,1.1221731182451,0.69560190836683,0.295220295959204,0.156998727841375,0,0,0.500535317148282,0.196558995113203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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=471 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-58bp_to_uc009biz.1_5end | |||
|cluster_id=chr6:36665592..36665664,- | |||
|description=CAGE_peak_2_at_uc009biz.1_5end | |||
|id=chr6:36665592..36665664,- | |||
|ontology_enrichment_celltype=CL:0000540!1.91e-15!33;CL:0000047!1.91e-15!33;CL:0000031!1.91e-15!33;CL:0000404!1.91e-15!33;CL:0000117!1.71e-13!23;CL:0000337!1.71e-13!23;CL:0000221!3.48e-12!44;CL:0000133!3.48e-12!44;CL:0000393!4.36e-12!39;CL:0000211!4.36e-12!39;CL:0002319!1.32e-11!43;CL:0000055!8.09e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.22e-17,33;CL:0000047,5.22e-17,33;CL:0000031,5.22e-17,33;CL:0000404,5.22e-17,33;CL:0000117,3.40e-15,23;CL:0000337,3.40e-15,23;CL:0000221,4.81e-14,44;CL:0000133,4.81e-14,44;CL:0002319,2.24e-13,43;CL:0000393,2.51e-13,39;CL:0000211,2.51e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.72e-22!73;UBERON:0005743!6.72e-22!73;UBERON:0000073!1.37e-20!75;UBERON:0001016!1.37e-20!75;UBERON:0004121!4.34e-18!102;UBERON:0000924!4.34e-18!102;UBERON:0006601!4.34e-18!102;UBERON:0001049!4.38e-15!52;UBERON:0005068!4.38e-15!52;UBERON:0006241!4.38e-15!52;UBERON:0007135!4.38e-15!52;UBERON:0002020!7.96e-15!34;UBERON:0002346!1.52e-14!71;UBERON:0003075!1.52e-14!71;UBERON:0007284!1.52e-14!71;UBERON:0000955!1.75e-13!50;UBERON:0006238!1.75e-13!50;UBERON:0002616!1.87e-13!49;UBERON:0000033!3.15e-13!63;UBERON:0002780!5.80e-13!39;UBERON:0001890!5.80e-13!39;UBERON:0006240!5.80e-13!39;UBERON:0003080!7.02e-13!40;UBERON:0003056!4.48e-12!49;UBERON:0002791!1.58e-11!29;UBERON:0003528!1.58e-11!29;UBERON:0001893!1.58e-11!29;UBERON:0000468!2.14e-08!333;UBERON:0000956!5.51e-08!21;UBERON:0001869!5.51e-08!21;UBERON:0000203!5.51e-08!21;UBERON:0002021!6.96e-08!10;UBERON:0000411!6.96e-08!10;UBERON:0001950!6.96e-08!10;UBERON:0000153!2.92e-07!94;UBERON:0000922!3.85e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.18e-23,73;UBERON:0001016,2.91e-22,75;UBERON:0000073,4.96e-18,54;UBERON:0002020,3.12e-17,34;UBERON:0004121,2.65e-16,95;UBERON:0000924,2.65e-16,95;UBERON:0006601,2.65e-16,95;UBERON:0001049,2.86e-16,52;UBERON:0005068,2.86e-16,52;UBERON:0006241,2.86e-16,52;UBERON:0007135,2.86e-16,52;UBERON:0002780,1.07e-14,39;UBERON:0001890,1.07e-14,39;UBERON:0006240,1.07e-14,39;UBERON:0003080,1.33e-14,40;UBERON:0002346,7.31e-14,64;UBERON:0003075,7.31e-14,64;UBERON:0007284,7.31e-14,64;UBERON:0003528,1.97e-13,29;UBERON:0002791,1.97e-13,29;UBERON:0001893,1.97e-13,29;UBERON:0010314,6.85e-13,92;UBERON:0000955,1.23e-12,47;UBERON:0006238,1.23e-12,47;UBERON:0002616,1.36e-12,46;UBERON:0010371,2.83e-12,73;UBERON:0003056,3.78e-12,49;UBERON:0000956,2.34e-09,21;UBERON:0001869,2.34e-09,21;UBERON:0000203,2.34e-09,21;UBERON:0002021,8.68e-09,10;UBERON:0000411,8.68e-09,10;UBERON:0001950,8.68e-09,10;UBERON:0002619,2.14e-07,17 | |||
|phase1_expression=69.184301949271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,1.56478268869608,0,0,0,1.67983705950435,1.43752564364972,0,0,0,0.514518872071894,6.30373567865265,0,5.46254444320914,7.93486468908049,5.70448263155561,0,1.77858959222228,0,0,0,3.29560121570245,3.45796474789399,7.05089363697648,5.8052553482627,6.94072372459561,23.1377297367081,19.8781686856452,3.79721477566358,1.91690942036473,7.35375029288017,15.4162233399144,7.02280359468532,9.06278546211836,8.04506355154182,7.41049913179518,11.4600941522487,7.81712397203867,7.87867654044352,12.071061574368,35.9446874277875,11.6744778255264,15.2847545576746,0,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0,0,0.70667914902068,14.3660288172214,0,0,0,0,0,0,0.45673551887624,0,0.148442139064825,2.94925055502431,2.74018930480927,1.84492397804847,1.65794904607885,1.41106448562846,0.628332956648377,0.494389935468748,0,0,1.45590164952668,1.10420759230197,3.39412677194655,0,0.878342391034642,1.46612694769419,0,0,0,0,1.3481157546434,2.74500361691176,2.26177833803156,3.65031072403781,2.55715457330331,2.28566849015516,2.27137768294861,5.49932564791708,1.24406970610093,0,0.420883711772948,1.04096354370163,0.459804208866946,0.900310649026746,3.0140963567143,0.612328492361951,1.5373646434182,1.68663104207512,1.55222022443409,1.07783996466421,1.51284864134255,0.703804496655795,1.97276159184817,6.67313398141435,2.089512999133,5.14455341019859,5.9710280045548,0,0,0,0.207125772535502,3.51789089971644,4.68161359798639,1.42046841351126,2.55793501271625,4.47374627373397,3.95307706075693,0.536546802799238,0.467061369468678,1.6455984991348,1.97000956894914,0.324275238183423,0.292399974850665,0,0.134206418760372,1.05144974282064,2.88132914661996,0,0.264450566663544,4.26576501070468,3.94802342162745,1.03093969057675,0.605050573870028,1.11189021922435,0.190225626112559,0,0.823494773620054,1.50801125280162,0.397912944082302,1.16978452271472,0,0.432276099749388,0,0.758671603812327,3.65595240351132,1.1270773567308,5.49858585182348,0.969762435838129,1.1221731182451,0.69560190836683,0.295220295959204,0.156998727841375,0,0,0.500535317148282,0.196558995113203,0.224862112384854,0,0,0,0,0.324270453550071,0.274561413188081,0,0.372140947668503,0,0,0,0,0,3.41084541186873,0.162964976442026,2.71592137240301,1.64283173801951,0.335012514883631,0,0.195133647857799,0,0.221464689648775,0,0,0.172684981865896,0,0,0,0,0,0.963303539926752,1.87538698547525,30.6558347854383,0.252470927204373,1.89304931649754,0.390438744296638,2.15423397732799,3.34556317133573,2.67358408898873,4.81230102341015,4.45291771842384,4.67609372658099,3.95287777946523,1.60660658210904,0,9.79360820169904,3.09485222771795,0.824850614862677,0,8.98288353773431,4.83717691143602,6.41257271170054,0.590603785761546,1.84461088766356,1.03371317267288,4.72593848320757,4.63446591900138,0,0,1.03135543248187,0.340439605753788,2.88097750450096,3.36332577835162,3.00071849044229,2.30542303734956,4.28085162244969,4.60737257685939,2.13125464380219,1.87737366450968,0.21183207086382,0.220528398054962,0.65954501176592,1.77610869365496,0.422190474497091,0.477489376012546,0.492422699235184,0.582961673259701,2.41052892613663,0,2.27025554759545,3.51869602002452,0,0,0,0,0,0,0.954670618015114,0.474503990371703,1.01659733563424,3.13215488383224,2.29997125615916,1.52853794622324,1.21377911746339,0.743881101528023,0.26175594198403,0.259229946583586,0,0,0.747582730219894,1.32366792365678,1.55560950675238,2.58319646955462,4.56181538825101,3.52071715937262,1.3020438484395,0.104859344425711,0,0,0,5.6763060281246,6.36807934421929,1.81889152168913,0.537080087002444,0.198681354781265,0.240390899039938,0.295379054349154,0.302899349844443,0.228620419965,0.201652370273681,0.194915761479505,0,0,0.453460767230423,0,0,0,0.386379188064381,2.064507229963,0.183151624267265,0,0,20.8958181768315,17.0320337507655,23.4887160510153,18.5601436931183,21.2375581128899,24.1726047164704,18.9006300064906,9.90706647093285,5.89085131679466,14.497288729051,5.39694207437719,0.399024873401031,1.87806966329548,0.243106717068294,1.46729213839588,2.20612210140017,3.55594764482584,2.26638562962784,5.45562656306086,3.53776096469316,2.02783439912192,1.50901073108861,3.55837728385553,1.34452820050225,1.49332219284595,4.28664322154766,3.36064545240081,3.08654752741928,4.12085900803307,5.00476328456951,7.88599280486455,8.69631450180754,3.57654284920981,5.23247099876383,4.23492211868988,5.49994951295897,3.84148743032822,10.7858581689516,3.39510284614654,5.61142271657738,2.37270036248348,3.15214343601803,11.867700251921,2.01417893541756,2.12197272079256,1.24905288968973,1.40358965067245,0.644613162144895,0.956441660344217,0.441182838239031,0.927471342481686 | |||
|short_description=p2@uc009biz.1 | |||
}} |
Latest revision as of 15:20, 5 August 2015
Short description: | p2@uc009biz.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_uc009biz.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:471 |
Association with transcript: | -58bp_to_uc009biz.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.22e-17 | 33 |
neuronal stem cell | 5.22e-17 | 33 |
neuroblast | 5.22e-17 | 33 |
electrically signaling cell | 5.22e-17 | 33 |
CNS neuron (sensu Vertebrata) | 3.40e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.40e-15 | 23 |
ectodermal cell | 4.81e-14 | 44 |
neurectodermal cell | 4.81e-14 | 44 |
neural cell | 2.24e-13 | 43 |
electrically responsive cell | 2.51e-13 | 39 |
electrically active cell | 2.51e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.18e-23 | 73 |
nervous system | 2.91e-22 | 75 |
regional part of nervous system | 4.96e-18 | 54 |
gray matter | 3.12e-17 | 34 |
ectoderm-derived structure | 2.65e-16 | 95 |
ectoderm | 2.65e-16 | 95 |
presumptive ectoderm | 2.65e-16 | 95 |
neural tube | 2.86e-16 | 52 |
neural rod | 2.86e-16 | 52 |
future spinal cord | 2.86e-16 | 52 |
neural keel | 2.86e-16 | 52 |
regional part of forebrain | 1.07e-14 | 39 |
forebrain | 1.07e-14 | 39 |
future forebrain | 1.07e-14 | 39 |
anterior neural tube | 1.33e-14 | 40 |
neurectoderm | 7.31e-14 | 64 |
neural plate | 7.31e-14 | 64 |
presumptive neural plate | 7.31e-14 | 64 |
brain grey matter | 1.97e-13 | 29 |
regional part of telencephalon | 1.97e-13 | 29 |
telencephalon | 1.97e-13 | 29 |
structure with developmental contribution from neural crest | 6.85e-13 | 92 |
brain | 1.23e-12 | 47 |
future brain | 1.23e-12 | 47 |
regional part of brain | 1.36e-12 | 46 |
ecto-epithelium | 2.83e-12 | 73 |
pre-chordal neural plate | 3.78e-12 | 49 |
cerebral cortex | 2.34e-09 | 21 |
cerebral hemisphere | 2.34e-09 | 21 |
pallium | 2.34e-09 | 21 |
occipital lobe | 8.68e-09 | 10 |
visual cortex | 8.68e-09 | 10 |
neocortex | 8.68e-09 | 10 |
regional part of cerebral cortex | 2.14e-07 | 17 |