FFCP PHASE1:Mm9::chr15:87454688..87454721,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=3018|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr15:87454688..87454721,+|id=chr15:87454688..87454721,+|ontology_enrichment_celltype=CL:0000221!2.04e-22!44;CL:0000133!2.04e-22!44;CL:0002319!9.43e-22!43;CL:0000055!6.37e-19!50;CL:0000540!3.79e-16!33;CL:0000047!3.79e-16!33;CL:0000031!3.79e-16!33;CL:0000404!3.79e-16!33;CL:0000393!1.55e-14!39;CL:0000211!1.55e-14!39;CL:0000117!3.31e-12!23;CL:0000337!3.31e-12!23;CL:0002321!1.34e-07!70;CL:0000220!1.34e-07!70|ontology_enrichment_celltype_v019_2=CL:0000221,1.37e-23,44;CL:0000133,1.37e-23,44;CL:0002319,6.92e-23,43;CL:0000540,5.77e-17,33;CL:0000047,5.77e-17,33;CL:0000031,5.77e-17,33;CL:0000404,5.77e-17,33;CL:0000393,5.03e-15,39;CL:0000211,5.03e-15,39;CL:0000117,8.39e-13,23;CL:0000337,8.39e-13,23;CL:0002321,3.37e-08,70;CL:0000333,8.66e-07,10;CL:0000095,8.66e-07,10;CL:0000243,8.66e-07,10;CL:0000123,8.66e-07,10;CL:0000125,8.66e-07,10;CL:0000030,8.66e-07,10;CL:0000339,8.66e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.61e-38!75;UBERON:0001016!4.61e-38!75;UBERON:0001017!1.07e-36!73;UBERON:0005743!1.07e-36!73;UBERON:0004121!5.00e-36!102;UBERON:0000924!5.00e-36!102;UBERON:0006601!5.00e-36!102;UBERON:0002346!9.06e-28!71;UBERON:0003075!9.06e-28!71;UBERON:0007284!9.06e-28!71;UBERON:0000033!1.10e-25!63;UBERON:0001049!1.85e-24!52;UBERON:0005068!1.85e-24!52;UBERON:0006241!1.85e-24!52;UBERON:0007135!1.85e-24!52;UBERON:0000955!5.61e-23!50;UBERON:0006238!5.61e-23!50;UBERON:0002616!2.00e-22!49;UBERON:0003056!3.10e-19!49;UBERON:0003080!2.32e-17!40;UBERON:0002020!2.42e-17!34;UBERON:0002780!1.19e-16!39;UBERON:0001890!1.19e-16!39;UBERON:0006240!1.19e-16!39;UBERON:0002791!3.02e-14!29;UBERON:0003528!3.02e-14!29;UBERON:0001893!3.02e-14!29;UBERON:0000153!4.50e-12!94;UBERON:0007811!9.26e-12!86;UBERON:0000956!5.09e-10!21;UBERON:0001869!5.09e-10!21;UBERON:0000203!5.09e-10!21;UBERON:0000468!1.68e-09!333;UBERON:0002619!8.39e-09!17;UBERON:0004111!8.82e-08!122;UBERON:0003076!9.65e-08!12;UBERON:0003057!9.65e-08!12;UBERON:0000922!5.85e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.02e-40,75;UBERON:0001017,1.12e-38,73;UBERON:0004121,1.18e-35,95;UBERON:0000924,1.18e-35,95;UBERON:0006601,1.18e-35,95;UBERON:0002346,3.08e-29,64;UBERON:0003075,3.08e-29,64;UBERON:0007284,3.08e-29,64;UBERON:0000073,3.87e-27,54;UBERON:0001049,9.54e-26,52;UBERON:0005068,9.54e-26,52;UBERON:0006241,9.54e-26,52;UBERON:0007135,9.54e-26,52;UBERON:0010371,5.25e-25,73;UBERON:0000955,4.79e-22,47;UBERON:0006238,4.79e-22,47;UBERON:0002616,1.79e-21,46;UBERON:0010314,6.12e-21,92;UBERON:0003056,3.16e-20,49;UBERON:0003080,3.01e-18,40;UBERON:0002020,3.15e-18,34;UBERON:0002780,1.70e-17,39;UBERON:0001890,1.70e-17,39;UBERON:0006240,1.70e-17,39;UBERON:0003528,5.88e-15,29;UBERON:0002791,5.88e-15,29;UBERON:0001893,5.88e-15,29;UBERON:0000956,1.71e-10,21;UBERON:0001869,1.71e-10,21;UBERON:0000203,1.71e-10,21;UBERON:0002619,3.29e-09,17;UBERON:0003076,4.33e-08,12;UBERON:0003057,4.33e-08,12|phase1_expression=15.3742893220602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48677489619386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.06457089424156,11.0500855029271,5.13930906052708,14.8654355426127,7.84890562969608,15.378032791413,17.1098311185369,6.15940255151595,11.5002051491977,0,0,0,0.514518872071894,0.573066879877513,0,10.7227724255587,17.9856932952491,21.5502677192101,4.06613438482959,0.889294796111139,0.899899717281399,1.97773272513395,0.7104801149461,26.3648097256196,40.7271403640848,6.53244557543409,6.75029691658453,5.67877395648731,20.8525218614777,18.9946945218388,5.26710436624302,4.79227355091182,6.43453150627015,20.9220173898839,17.3654779795855,15.3606533256243,11.3422207447967,12.4423195299277,11.4600941522487,20.9387249251036,11.2552522006336,17.72459674211,17.9723437138937,15.6608848879013,11.5567656411686,14.3122505399718,14.7364542208232,0.579728977403356,0,0.679971333707751,0.539703191637817,0.649776417447669,0.896053774194671,2.66844398250329,0,0.259786004602869,0,16.9012103732017,0,0,0,0.865964164044856,0.253359865475099,0,0.5709193985953,0.258937883647172,5.49235914539852,1.73485326766136,2.43572382649713,1.38369298353635,1.50722640552623,5.40908052824242,10.1789938977037,0.247194967734374,2.31358971071859,0.884610551949874,1.94120219936891,1.10420759230197,0,0,7.31951992528868,8.3778682725382,0,0,0,0,23.9665023047716,17.3850229071078,14.3245961408665,10.7771078519211,15.0872119824895,19.7398642331582,13.6282660976916,3.97173519016234,1.24406970610093,1.0108910337347,5.26104639716185,4.55421550369463,4.82794419310293,5.22180176435513,4.37043971723574,6.25935792192216,3.71529788826064,6.74652416830048,3.62184719034622,3.66465587985832,2.45837904218165,3.87092473160687,3.28793598641362,1.94633074457919,2.78601733217733,3.49829631893504,2.7864797354589,0,0,0,1.44988040774851,1.64168241986767,1.62055855314913,0.473489471170421,0,0.617068451549513,0.697601834251224,0.268273401399619,0.81735739657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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=3018 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr15:87454688..87454721,+ | |||
|description=CAGE_peak_at_chr15:87454688..87454721,+ | |||
|id=chr15:87454688..87454721,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.04e-22!44;CL:0000133!2.04e-22!44;CL:0002319!9.43e-22!43;CL:0000055!6.37e-19!50;CL:0000540!3.79e-16!33;CL:0000047!3.79e-16!33;CL:0000031!3.79e-16!33;CL:0000404!3.79e-16!33;CL:0000393!1.55e-14!39;CL:0000211!1.55e-14!39;CL:0000117!3.31e-12!23;CL:0000337!3.31e-12!23;CL:0002321!1.34e-07!70;CL:0000220!1.34e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.37e-23,44;CL:0000133,1.37e-23,44;CL:0002319,6.92e-23,43;CL:0000540,5.77e-17,33;CL:0000047,5.77e-17,33;CL:0000031,5.77e-17,33;CL:0000404,5.77e-17,33;CL:0000393,5.03e-15,39;CL:0000211,5.03e-15,39;CL:0000117,8.39e-13,23;CL:0000337,8.39e-13,23;CL:0002321,3.37e-08,70;CL:0000333,8.66e-07,10;CL:0000095,8.66e-07,10;CL:0000243,8.66e-07,10;CL:0000123,8.66e-07,10;CL:0000125,8.66e-07,10;CL:0000030,8.66e-07,10;CL:0000339,8.66e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.61e-38!75;UBERON:0001016!4.61e-38!75;UBERON:0001017!1.07e-36!73;UBERON:0005743!1.07e-36!73;UBERON:0004121!5.00e-36!102;UBERON:0000924!5.00e-36!102;UBERON:0006601!5.00e-36!102;UBERON:0002346!9.06e-28!71;UBERON:0003075!9.06e-28!71;UBERON:0007284!9.06e-28!71;UBERON:0000033!1.10e-25!63;UBERON:0001049!1.85e-24!52;UBERON:0005068!1.85e-24!52;UBERON:0006241!1.85e-24!52;UBERON:0007135!1.85e-24!52;UBERON:0000955!5.61e-23!50;UBERON:0006238!5.61e-23!50;UBERON:0002616!2.00e-22!49;UBERON:0003056!3.10e-19!49;UBERON:0003080!2.32e-17!40;UBERON:0002020!2.42e-17!34;UBERON:0002780!1.19e-16!39;UBERON:0001890!1.19e-16!39;UBERON:0006240!1.19e-16!39;UBERON:0002791!3.02e-14!29;UBERON:0003528!3.02e-14!29;UBERON:0001893!3.02e-14!29;UBERON:0000153!4.50e-12!94;UBERON:0007811!9.26e-12!86;UBERON:0000956!5.09e-10!21;UBERON:0001869!5.09e-10!21;UBERON:0000203!5.09e-10!21;UBERON:0000468!1.68e-09!333;UBERON:0002619!8.39e-09!17;UBERON:0004111!8.82e-08!122;UBERON:0003076!9.65e-08!12;UBERON:0003057!9.65e-08!12;UBERON:0000922!5.85e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.02e-40,75;UBERON:0001017,1.12e-38,73;UBERON:0004121,1.18e-35,95;UBERON:0000924,1.18e-35,95;UBERON:0006601,1.18e-35,95;UBERON:0002346,3.08e-29,64;UBERON:0003075,3.08e-29,64;UBERON:0007284,3.08e-29,64;UBERON:0000073,3.87e-27,54;UBERON:0001049,9.54e-26,52;UBERON:0005068,9.54e-26,52;UBERON:0006241,9.54e-26,52;UBERON:0007135,9.54e-26,52;UBERON:0010371,5.25e-25,73;UBERON:0000955,4.79e-22,47;UBERON:0006238,4.79e-22,47;UBERON:0002616,1.79e-21,46;UBERON:0010314,6.12e-21,92;UBERON:0003056,3.16e-20,49;UBERON:0003080,3.01e-18,40;UBERON:0002020,3.15e-18,34;UBERON:0002780,1.70e-17,39;UBERON:0001890,1.70e-17,39;UBERON:0006240,1.70e-17,39;UBERON:0003528,5.88e-15,29;UBERON:0002791,5.88e-15,29;UBERON:0001893,5.88e-15,29;UBERON:0000956,1.71e-10,21;UBERON:0001869,1.71e-10,21;UBERON:0000203,1.71e-10,21;UBERON:0002619,3.29e-09,17;UBERON:0003076,4.33e-08,12;UBERON:0003057,4.33e-08,12 | |||
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| |||
|short_description=p@chr15:87454688..87454721,+ | |||
}} |
Latest revision as of 19:30, 5 August 2015
Short description: | p@chr15:87454688..87454721, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:87454688..87454721, + |
Coexpression cluster: | MCL_coexpression_mm9:3018 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.37e-23 | 44 |
neurectodermal cell | 1.37e-23 | 44 |
neural cell | 6.92e-23 | 43 |
neuron | 5.77e-17 | 33 |
neuronal stem cell | 5.77e-17 | 33 |
neuroblast | 5.77e-17 | 33 |
electrically signaling cell | 5.77e-17 | 33 |
electrically responsive cell | 5.03e-15 | 39 |
electrically active cell | 5.03e-15 | 39 |
CNS neuron (sensu Vertebrata) | 8.39e-13 | 23 |
neuroblast (sensu Vertebrata) | 8.39e-13 | 23 |
embryonic cell | 3.37e-08 | 70 |
migratory neural crest cell | 8.66e-07 | 10 |
neuron associated cell | 8.66e-07 | 10 |
glial cell (sensu Vertebrata) | 8.66e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 8.66e-07 | 10 |
glial cell | 8.66e-07 | 10 |
glioblast | 8.66e-07 | 10 |
glioblast (sensu Vertebrata) | 8.66e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.02e-40 | 75 |
central nervous system | 1.12e-38 | 73 |
ectoderm-derived structure | 1.18e-35 | 95 |
ectoderm | 1.18e-35 | 95 |
presumptive ectoderm | 1.18e-35 | 95 |
neurectoderm | 3.08e-29 | 64 |
neural plate | 3.08e-29 | 64 |
presumptive neural plate | 3.08e-29 | 64 |
regional part of nervous system | 3.87e-27 | 54 |
neural tube | 9.54e-26 | 52 |
neural rod | 9.54e-26 | 52 |
future spinal cord | 9.54e-26 | 52 |
neural keel | 9.54e-26 | 52 |
ecto-epithelium | 5.25e-25 | 73 |
brain | 4.79e-22 | 47 |
future brain | 4.79e-22 | 47 |
regional part of brain | 1.79e-21 | 46 |
structure with developmental contribution from neural crest | 6.12e-21 | 92 |
pre-chordal neural plate | 3.16e-20 | 49 |
anterior neural tube | 3.01e-18 | 40 |
gray matter | 3.15e-18 | 34 |
regional part of forebrain | 1.70e-17 | 39 |
forebrain | 1.70e-17 | 39 |
future forebrain | 1.70e-17 | 39 |
brain grey matter | 5.88e-15 | 29 |
regional part of telencephalon | 5.88e-15 | 29 |
telencephalon | 5.88e-15 | 29 |
cerebral cortex | 1.71e-10 | 21 |
cerebral hemisphere | 1.71e-10 | 21 |
pallium | 1.71e-10 | 21 |
regional part of cerebral cortex | 3.29e-09 | 17 |
posterior neural tube | 4.33e-08 | 12 |
chordal neural plate | 4.33e-08 | 12 |