FFCP PHASE1:Mm9::chr1:64167811..64167826,-: Difference between revisions
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{{FFCP|EntrezGene=93691|HGNC=|UniProt=Q99JB0|association_with_transcript=136bp_to_ENSMUST00000055001,NM_033563,uc007bgo.1_5end|description=CAGE_peak_5_at_Klf7_5end|id=chr1:64167811..64167826,-|ontology_enrichment_celltype=CL:0000393!2.33e-10!39;CL:0000211!2.33e-10!39;CL:0000055!3.12e-09!50;CL:0000540!4.66e-09!33;CL:0000047!4.66e-09!33;CL:0000031!4.66e-09!33;CL:0000404!4.66e-09!33;CL:0002319!9.00e-08!43;CL:0000221!1.77e-07!44;CL:0000133!1.77e-07!44;CL:0000117!7.26e-07!23;CL:0000337!7.26e-07!23|ontology_enrichment_celltype_v019_2=CL:0000393,4.73e-10,39;CL:0000211,4.73e-10,39;CL:0000540,7.43e-09,33;CL:0000047,7.43e-09,33;CL:0000031,7.43e-09,33;CL:0000404,7.43e-09,33;CL:0002319,3.38e-07,43;CL:0000117,5.84e-07,23;CL:0000337,5.84e-07,23;CL:0000221,9.42e-07,44;CL:0000133,9.42e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.43e-15!75;UBERON:0001016!2.43e-15!75;UBERON:0001017!3.65e-15!73;UBERON:0005743!3.65e-15!73;UBERON:0004121!2.58e-13!102;UBERON:0000924!2.58e-13!102;UBERON:0006601!2.58e-13!102;UBERON:0002020!1.06e-12!34;UBERON:0001049!4.17e-12!52;UBERON:0005068!4.17e-12!52;UBERON:0006241!4.17e-12!52;UBERON:0007135!4.17e-12!52;UBERON:0002346!8.22e-11!71;UBERON:0003075!8.22e-11!71;UBERON:0007284!8.22e-11!71;UBERON:0000955!1.80e-10!50;UBERON:0006238!1.80e-10!50;UBERON:0002616!3.99e-10!49;UBERON:0002791!4.36e-10!29;UBERON:0003528!4.36e-10!29;UBERON:0001893!4.36e-10!29;UBERON:0000033!3.58e-09!63;UBERON:0003080!2.82e-08!40;UBERON:0002780!3.69e-08!39;UBERON:0001890!3.69e-08!39;UBERON:0006240!3.69e-08!39;UBERON:0003056!6.30e-08!49;UBERON:0000025!8.35e-08!114;UBERON:0000956!2.21e-07!21;UBERON:0001869!2.21e-07!21;UBERON:0000203!2.21e-07!21;UBERON:0004111!3.22e-07!122;UBERON:0002619!8.24e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.97e-15,75;UBERON:0001017,7.98e-15,73;UBERON:0004121,2.01e-13,95;UBERON:0000924,2.01e-13,95;UBERON:0006601,2.01e-13,95;UBERON:0002020,3.55e-13,34;UBERON:0002346,1.51e-12,64;UBERON:0003075,1.51e-12,64;UBERON:0007284,1.51e-12,64;UBERON:0000073,1.63e-12,54;UBERON:0001049,5.09e-12,52;UBERON:0005068,5.09e-12,52;UBERON:0006241,5.09e-12,52;UBERON:0007135,5.09e-12,52;UBERON:0010371,1.70e-10,73;UBERON:0010314,1.74e-10,92;UBERON:0003528,2.66e-10,29;UBERON:0002791,2.66e-10,29;UBERON:0001893,2.66e-10,29;UBERON:0000955,2.47e-09,47;UBERON:0006238,2.47e-09,47;UBERON:0002616,5.69e-09,46;UBERON:0003080,4.08e-08,40;UBERON:0002780,5.55e-08,39;UBERON:0001890,5.55e-08,39;UBERON:0006240,5.55e-08,39;UBERON:0003056,9.41e-08,49;UBERON:0000956,2.61e-07,21;UBERON:0001869,2.61e-07,21;UBERON:0000203,2.61e-07,21;UBERON:0000025,2.97e-07,114;UBERON:0002021,4.54e-07,10;UBERON:0000411,4.54e-07,10;UBERON:0001950,4.54e-07,10|phase1_expression=0.640595388419176,0.697950815278722,1.36499771816861,0.60492842261366,0,0.839396359559449,0,0.516493293766305,0.140788722151667,0.70219357896598,0.68487187290202,0.319088635981346,1.19840510951844,0.34968160967599,0,0.202475267389826,0,0,0.137114433605739,0,1.19060606211498,0.198581902401771,0,0.159992422793407,0.45881856213434,0.57423196411502,0.86152399231815,1.07735616342945,0,0,0.443461021310609,0,0,0,0,0,0.204169356262369,1.67412652294763,3.1253413780952,1.0470474879476,2.35292595212406,5.46436387966757,1.94204141212461,0.755380907853464,1.4192770370732,2.38610777810186,0.782391344348039,1.30815093828268,0.878744730937887,2.72201858703997,1.53985063787899,0,0.503347818173209,1.45072428402269,1.34437519656986,1.80081605225163,4.01146815914259,4.64104883049698,2.63011399117477,2.11596391708813,0.633831403506179,0.338844532069132,0,0,0,1.4209602298922,1.19840044207362,0.768436610643109,1.34796496001021,1.62007125998029,2.10324961351382,4.57041575046086,2.42955395046775,1.95985278743926,2.01275489138296,0.919218786610021,1.10115880999389,3.06449611404451,5.37622866396852,1.97829431595291,2.8361169516747,3.12548022334056,1.67509799400829,1.68828783009504,1.98637722109853,2.35702868378934,3.84403538157578,3.72798891650601,1.8931548333296,1.20914496170857,15.9425468785923,1.72084775396277,1.3599426674155,0.539703191637817,0,0.448026887097336,0.983110940922263,0.511290967734173,0.259786004602869,1.7666978725517,0.704217098883403,1.28326477414318,0,7.11066703153331,0.649473123033642,0.506719730950197,0,0.34255163915718,2.07150306917737,1.33597925158342,0,1.52232739156071,0.922461989024234,0.452167921657868,1.17588707135705,0.628332956648377,6.92145909656247,2.4581890676385,0.884610551949874,0.970601099684455,1.76673214768315,1.45462575940567,1.86391761218122,7.31951992528868,4.39838084308256,0.255457055208591,0.718890747035522,0,0.381210681219194,1.64769703345305,4.11750542536764,2.63874139437015,2.25971616249959,1.27857728665165,2.28566849015516,1.29793010454206,0.916554274652847,0.248813941220186,0.505445516867349,0.631325567659422,0.390361328888111,1.14951052216736,1.80062129805349,1.35634336052144,2.04109497453984,1.5373646434182,1.21812241927647,1.81092359517311,0.215567992932842,0.567318240503458,0.35190224832789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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:93691 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q99JB0 | |||
|association_with_transcript=136bp_to_ENSMUST00000055001,NM_033563,uc007bgo.1_5end | |||
|cluster_id=chr1:64167811..64167826,- | |||
|description=CAGE_peak_5_at_Klf7_5end | |||
|id=chr1:64167811..64167826,- | |||
|ontology_enrichment_celltype=CL:0000393!2.33e-10!39;CL:0000211!2.33e-10!39;CL:0000055!3.12e-09!50;CL:0000540!4.66e-09!33;CL:0000047!4.66e-09!33;CL:0000031!4.66e-09!33;CL:0000404!4.66e-09!33;CL:0002319!9.00e-08!43;CL:0000221!1.77e-07!44;CL:0000133!1.77e-07!44;CL:0000117!7.26e-07!23;CL:0000337!7.26e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.73e-10,39;CL:0000211,4.73e-10,39;CL:0000540,7.43e-09,33;CL:0000047,7.43e-09,33;CL:0000031,7.43e-09,33;CL:0000404,7.43e-09,33;CL:0002319,3.38e-07,43;CL:0000117,5.84e-07,23;CL:0000337,5.84e-07,23;CL:0000221,9.42e-07,44;CL:0000133,9.42e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.43e-15!75;UBERON:0001016!2.43e-15!75;UBERON:0001017!3.65e-15!73;UBERON:0005743!3.65e-15!73;UBERON:0004121!2.58e-13!102;UBERON:0000924!2.58e-13!102;UBERON:0006601!2.58e-13!102;UBERON:0002020!1.06e-12!34;UBERON:0001049!4.17e-12!52;UBERON:0005068!4.17e-12!52;UBERON:0006241!4.17e-12!52;UBERON:0007135!4.17e-12!52;UBERON:0002346!8.22e-11!71;UBERON:0003075!8.22e-11!71;UBERON:0007284!8.22e-11!71;UBERON:0000955!1.80e-10!50;UBERON:0006238!1.80e-10!50;UBERON:0002616!3.99e-10!49;UBERON:0002791!4.36e-10!29;UBERON:0003528!4.36e-10!29;UBERON:0001893!4.36e-10!29;UBERON:0000033!3.58e-09!63;UBERON:0003080!2.82e-08!40;UBERON:0002780!3.69e-08!39;UBERON:0001890!3.69e-08!39;UBERON:0006240!3.69e-08!39;UBERON:0003056!6.30e-08!49;UBERON:0000025!8.35e-08!114;UBERON:0000956!2.21e-07!21;UBERON:0001869!2.21e-07!21;UBERON:0000203!2.21e-07!21;UBERON:0004111!3.22e-07!122;UBERON:0002619!8.24e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.97e-15,75;UBERON:0001017,7.98e-15,73;UBERON:0004121,2.01e-13,95;UBERON:0000924,2.01e-13,95;UBERON:0006601,2.01e-13,95;UBERON:0002020,3.55e-13,34;UBERON:0002346,1.51e-12,64;UBERON:0003075,1.51e-12,64;UBERON:0007284,1.51e-12,64;UBERON:0000073,1.63e-12,54;UBERON:0001049,5.09e-12,52;UBERON:0005068,5.09e-12,52;UBERON:0006241,5.09e-12,52;UBERON:0007135,5.09e-12,52;UBERON:0010371,1.70e-10,73;UBERON:0010314,1.74e-10,92;UBERON:0003528,2.66e-10,29;UBERON:0002791,2.66e-10,29;UBERON:0001893,2.66e-10,29;UBERON:0000955,2.47e-09,47;UBERON:0006238,2.47e-09,47;UBERON:0002616,5.69e-09,46;UBERON:0003080,4.08e-08,40;UBERON:0002780,5.55e-08,39;UBERON:0001890,5.55e-08,39;UBERON:0006240,5.55e-08,39;UBERON:0003056,9.41e-08,49;UBERON:0000956,2.61e-07,21;UBERON:0001869,2.61e-07,21;UBERON:0000203,2.61e-07,21;UBERON:0000025,2.97e-07,114;UBERON:0002021,4.54e-07,10;UBERON:0000411,4.54e-07,10;UBERON:0001950,4.54e-07,10 | |||
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| |||
|short_description=p5@Klf7 | |||
}} |
Revision as of 20:54, 5 August 2015
Short description: | p5@Klf7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Klf7_5end |
Coexpression cluster: | NA |
Association with transcript: | 136bp_to_ENSMUST00000055001, NM_033563, uc007bgo.1_5end |
EntrezGene: | 93691 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.73e-10 | 39 |
electrically active cell | 4.73e-10 | 39 |
neuron | 7.43e-09 | 33 |
neuronal stem cell | 7.43e-09 | 33 |
neuroblast | 7.43e-09 | 33 |
electrically signaling cell | 7.43e-09 | 33 |
neural cell | 3.38e-07 | 43 |
CNS neuron (sensu Vertebrata) | 5.84e-07 | 23 |
neuroblast (sensu Vertebrata) | 5.84e-07 | 23 |
ectodermal cell | 9.42e-07 | 44 |
neurectodermal cell | 9.42e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.97e-15 | 75 |
central nervous system | 7.98e-15 | 73 |
ectoderm-derived structure | 2.01e-13 | 95 |
ectoderm | 2.01e-13 | 95 |
presumptive ectoderm | 2.01e-13 | 95 |
gray matter | 3.55e-13 | 34 |
neurectoderm | 1.51e-12 | 64 |
neural plate | 1.51e-12 | 64 |
presumptive neural plate | 1.51e-12 | 64 |
regional part of nervous system | 1.63e-12 | 54 |
neural tube | 5.09e-12 | 52 |
neural rod | 5.09e-12 | 52 |
future spinal cord | 5.09e-12 | 52 |
neural keel | 5.09e-12 | 52 |
ecto-epithelium | 1.70e-10 | 73 |
structure with developmental contribution from neural crest | 1.74e-10 | 92 |
brain grey matter | 2.66e-10 | 29 |
regional part of telencephalon | 2.66e-10 | 29 |
telencephalon | 2.66e-10 | 29 |
brain | 2.47e-09 | 47 |
future brain | 2.47e-09 | 47 |
regional part of brain | 5.69e-09 | 46 |
anterior neural tube | 4.08e-08 | 40 |
regional part of forebrain | 5.55e-08 | 39 |
forebrain | 5.55e-08 | 39 |
future forebrain | 5.55e-08 | 39 |
pre-chordal neural plate | 9.41e-08 | 49 |
cerebral cortex | 2.61e-07 | 21 |
cerebral hemisphere | 2.61e-07 | 21 |
pallium | 2.61e-07 | 21 |
tube | 2.97e-07 | 114 |
occipital lobe | 4.54e-07 | 10 |
visual cortex | 4.54e-07 | 10 |
neocortex | 4.54e-07 | 10 |