FFCP PHASE1:Mm9::chr15:98465220..98465240,+: Difference between revisions
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{{FFCP|EntrezGene=12297|HGNC=|UniProt=G5E821|association_with_transcript=25bp_to_ENSMUST00000003442,NM_007581,uc007xnc.1,uc011zza.1_5end|description=CAGE_peak_5_at_Cacnb3_5end|id=chr15:98465220..98465240,+|ontology_enrichment_celltype=CL:0000055!4.69e-13!50;CL:0000221!3.69e-12!44;CL:0000133!3.69e-12!44;CL:0002319!6.02e-12!43;CL:0000393!6.94e-12!39;CL:0000211!6.94e-12!39;CL:0000540!6.33e-10!33;CL:0000047!6.33e-10!33;CL:0000031!6.33e-10!33;CL:0000404!6.33e-10!33;CL:0000117!2.30e-09!23;CL:0000337!2.30e-09!23;CL:0002321!8.06e-08!70;CL:0000220!8.06e-08!70|ontology_enrichment_celltype_v019_2=CL:0000221,3.08e-13,44;CL:0000133,3.08e-13,44;CL:0000393,3.57e-13,39;CL:0000211,3.57e-13,39;CL:0002319,5.45e-13,43;CL:0000540,6.64e-11,33;CL:0000047,6.64e-11,33;CL:0000031,6.64e-11,33;CL:0000404,6.64e-11,33;CL:0002321,8.43e-11,70;CL:0000117,1.68e-10,23;CL:0000337,1.68e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.15e-24!73;UBERON:0005743!1.15e-24!73;UBERON:0000073!2.79e-24!75;UBERON:0001016!2.79e-24!75;UBERON:0004121!1.03e-22!102;UBERON:0000924!1.03e-22!102;UBERON:0006601!1.03e-22!102;UBERON:0000033!1.29e-20!63;UBERON:0003056!3.10e-19!49;UBERON:0000955!4.49e-19!50;UBERON:0006238!4.49e-19!50;UBERON:0001049!4.94e-19!52;UBERON:0005068!4.94e-19!52;UBERON:0006241!4.94e-19!52;UBERON:0007135!4.94e-19!52;UBERON:0003080!8.47e-19!40;UBERON:0002780!1.59e-18!39;UBERON:0001890!1.59e-18!39;UBERON:0006240!1.59e-18!39;UBERON:0002346!1.76e-18!71;UBERON:0003075!1.76e-18!71;UBERON:0007284!1.76e-18!71;UBERON:0002616!2.28e-18!49;UBERON:0002020!2.65e-15!34;UBERON:0002791!2.95e-14!29;UBERON:0003528!2.95e-14!29;UBERON:0001893!2.95e-14!29;UBERON:0007811!1.14e-12!86;UBERON:0000153!9.05e-12!94;UBERON:0000956!1.38e-11!21;UBERON:0001869!1.38e-11!21;UBERON:0000203!1.38e-11!21;UBERON:0002619!5.49e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.19e-27,73;UBERON:0001016,1.76e-26,75;UBERON:0004121,7.25e-25,95;UBERON:0000924,7.25e-25,95;UBERON:0006601,7.25e-25,95;UBERON:0000073,4.25e-22,54;UBERON:0002346,5.37e-22,64;UBERON:0003075,5.37e-22,64;UBERON:0007284,5.37e-22,64;UBERON:0003080,1.82e-21,40;UBERON:0003056,1.98e-21,49;UBERON:0000955,3.41e-21,47;UBERON:0006238,3.41e-21,47;UBERON:0002780,3.78e-21,39;UBERON:0001890,3.78e-21,39;UBERON:0006240,3.78e-21,39;UBERON:0001049,5.66e-21,52;UBERON:0005068,5.66e-21,52;UBERON:0006241,5.66e-21,52;UBERON:0007135,5.66e-21,52;UBERON:0002616,2.25e-20,46;UBERON:0010371,1.54e-19,73;UBERON:0002020,2.12e-17,34;UBERON:0003528,3.55e-16,29;UBERON:0002791,3.55e-16,29;UBERON:0001893,3.55e-16,29;UBERON:0000956,3.12e-13,21;UBERON:0001869,3.12e-13,21;UBERON:0000203,3.12e-13,21;UBERON:0010314,4.91e-13,92;UBERON:0002619,3.31e-10,17;UBERON:0002021,6.80e-07,10;UBERON:0000411,6.80e-07,10;UBERON:0001950,6.80e-07,10|phase1_expression=1.60148847104794,4.53668029931169,3.63999391511629,0.30246421130683,0,2.85394762250213,2.10251376535973,0,0.281577444303333,0.234064526321993,0.171217968225505,0,0.171200729931206,0.34968160967599,0,0,0,0,0,0,1.61582251287033,0.297872853602656,0.522399578277871,3.67982572424835,4.35877634027623,1.72269589234506,0.86152399231815,2.80112602491656,1.14014051673824,0.756090389279792,2.43903561720835,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,1.88845226963366,3.64956952390252,4.03802854755699,3.12956537739216,2.18025156380447,3.07560655828261,1.1665793944457,1.67983705950435,2.87505128729943,0,0.725362142011344,0,1.28629718017973,2.86533439938757,3.09403255366465,8.09265843438391,4.23192783417626,6.33831403506179,3.04960078862219,3.55717918444456,0.899899717281399,0,0,3.59520132622086,3.07374644257244,7.05089363697648,5.8052553482627,5.67877395648731,1.99955689082663,1.32521124570968,5.51208596467293,5.65488279007595,5.51531271966013,1.10115880999389,2.29837208553338,1.53606533256243,3.95658863190582,5.48925861614458,2.6045668527838,2.51264699101243,3.37657566019008,0.45839474333043,2.94628585473668,1.56608848879013,3.72798891650601,0.681535739998656,1.36028808192214,0,0,0,0,0,0,0.421333260395256,3.57903677413921,3.11743205523443,2.12003744706204,1.97180787687353,1.28326477414318,2.54805239706646,0,1.5154372870785,0.506719730950197,0,0.5709193985953,0.258937883647172,0.742210695324124,1.21439728736295,0.304465478312141,1.61430848079241,0.301445281105245,1.17588707135705,0.879666139307728,0.741584903203122,0.289198713839823,0,0.647067399789637,0.883366073841574,0.969750506270444,3.72783522436244,0.292780797011547,1.46612694769419,1.27728527604296,0,0,0,2.24685959107234,5.49000723382352,4.90051973240171,5.9100268865374,6.90431734791892,2.90903262383384,4.05603157669394,1.12023300235348,0.373220911830279,0.252722758433675,0.420883711772948,1.82168620147785,1.83921683546778,3.42118046630164,3.16480117455002,1.02054748726992,2.17793324484245,2.24884138943349,0.776110112217047,0.431135985865684,1.70195472151037,1.23165786914764,3.06874025398605,1.39023624612799,0.348252166522167,0.205782136407943,2.9855140022774,0,0,0,0.207125772535502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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:12297 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:G5E821 | |||
|association_with_transcript=25bp_to_ENSMUST00000003442,NM_007581,uc007xnc.1,uc011zza.1_5end | |||
|cluster_id=chr15:98465220..98465240,+ | |||
|description=CAGE_peak_5_at_Cacnb3_5end | |||
|id=chr15:98465220..98465240,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.69e-13!50;CL:0000221!3.69e-12!44;CL:0000133!3.69e-12!44;CL:0002319!6.02e-12!43;CL:0000393!6.94e-12!39;CL:0000211!6.94e-12!39;CL:0000540!6.33e-10!33;CL:0000047!6.33e-10!33;CL:0000031!6.33e-10!33;CL:0000404!6.33e-10!33;CL:0000117!2.30e-09!23;CL:0000337!2.30e-09!23;CL:0002321!8.06e-08!70;CL:0000220!8.06e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.08e-13,44;CL:0000133,3.08e-13,44;CL:0000393,3.57e-13,39;CL:0000211,3.57e-13,39;CL:0002319,5.45e-13,43;CL:0000540,6.64e-11,33;CL:0000047,6.64e-11,33;CL:0000031,6.64e-11,33;CL:0000404,6.64e-11,33;CL:0002321,8.43e-11,70;CL:0000117,1.68e-10,23;CL:0000337,1.68e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.15e-24!73;UBERON:0005743!1.15e-24!73;UBERON:0000073!2.79e-24!75;UBERON:0001016!2.79e-24!75;UBERON:0004121!1.03e-22!102;UBERON:0000924!1.03e-22!102;UBERON:0006601!1.03e-22!102;UBERON:0000033!1.29e-20!63;UBERON:0003056!3.10e-19!49;UBERON:0000955!4.49e-19!50;UBERON:0006238!4.49e-19!50;UBERON:0001049!4.94e-19!52;UBERON:0005068!4.94e-19!52;UBERON:0006241!4.94e-19!52;UBERON:0007135!4.94e-19!52;UBERON:0003080!8.47e-19!40;UBERON:0002780!1.59e-18!39;UBERON:0001890!1.59e-18!39;UBERON:0006240!1.59e-18!39;UBERON:0002346!1.76e-18!71;UBERON:0003075!1.76e-18!71;UBERON:0007284!1.76e-18!71;UBERON:0002616!2.28e-18!49;UBERON:0002020!2.65e-15!34;UBERON:0002791!2.95e-14!29;UBERON:0003528!2.95e-14!29;UBERON:0001893!2.95e-14!29;UBERON:0007811!1.14e-12!86;UBERON:0000153!9.05e-12!94;UBERON:0000956!1.38e-11!21;UBERON:0001869!1.38e-11!21;UBERON:0000203!1.38e-11!21;UBERON:0002619!5.49e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.19e-27,73;UBERON:0001016,1.76e-26,75;UBERON:0004121,7.25e-25,95;UBERON:0000924,7.25e-25,95;UBERON:0006601,7.25e-25,95;UBERON:0000073,4.25e-22,54;UBERON:0002346,5.37e-22,64;UBERON:0003075,5.37e-22,64;UBERON:0007284,5.37e-22,64;UBERON:0003080,1.82e-21,40;UBERON:0003056,1.98e-21,49;UBERON:0000955,3.41e-21,47;UBERON:0006238,3.41e-21,47;UBERON:0002780,3.78e-21,39;UBERON:0001890,3.78e-21,39;UBERON:0006240,3.78e-21,39;UBERON:0001049,5.66e-21,52;UBERON:0005068,5.66e-21,52;UBERON:0006241,5.66e-21,52;UBERON:0007135,5.66e-21,52;UBERON:0002616,2.25e-20,46;UBERON:0010371,1.54e-19,73;UBERON:0002020,2.12e-17,34;UBERON:0003528,3.55e-16,29;UBERON:0002791,3.55e-16,29;UBERON:0001893,3.55e-16,29;UBERON:0000956,3.12e-13,21;UBERON:0001869,3.12e-13,21;UBERON:0000203,3.12e-13,21;UBERON:0010314,4.91e-13,92;UBERON:0002619,3.31e-10,17;UBERON:0002021,6.80e-07,10;UBERON:0000411,6.80e-07,10;UBERON:0001950,6.80e-07,10 | |||
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| |||
|short_description=p5@Cacnb3 | |||
}} |
Revision as of 23:21, 5 August 2015
Short description: | p5@Cacnb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Cacnb3_5end |
Coexpression cluster: | NA |
Association with transcript: | 25bp_to_ENSMUST00000003442, NM_007581, uc007xnc.1, uc011zza.1_5end |
EntrezGene: | 12297 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.08e-13 | 44 |
neurectodermal cell | 3.08e-13 | 44 |
electrically responsive cell | 3.57e-13 | 39 |
electrically active cell | 3.57e-13 | 39 |
neural cell | 5.45e-13 | 43 |
neuron | 6.64e-11 | 33 |
neuronal stem cell | 6.64e-11 | 33 |
neuroblast | 6.64e-11 | 33 |
electrically signaling cell | 6.64e-11 | 33 |
embryonic cell | 8.43e-11 | 70 |
CNS neuron (sensu Vertebrata) | 1.68e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.68e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.19e-27 | 73 |
nervous system | 1.76e-26 | 75 |
ectoderm-derived structure | 7.25e-25 | 95 |
ectoderm | 7.25e-25 | 95 |
presumptive ectoderm | 7.25e-25 | 95 |
regional part of nervous system | 4.25e-22 | 54 |
neurectoderm | 5.37e-22 | 64 |
neural plate | 5.37e-22 | 64 |
presumptive neural plate | 5.37e-22 | 64 |
anterior neural tube | 1.82e-21 | 40 |
pre-chordal neural plate | 1.98e-21 | 49 |
brain | 3.41e-21 | 47 |
future brain | 3.41e-21 | 47 |
regional part of forebrain | 3.78e-21 | 39 |
forebrain | 3.78e-21 | 39 |
future forebrain | 3.78e-21 | 39 |
neural tube | 5.66e-21 | 52 |
neural rod | 5.66e-21 | 52 |
future spinal cord | 5.66e-21 | 52 |
neural keel | 5.66e-21 | 52 |
regional part of brain | 2.25e-20 | 46 |
ecto-epithelium | 1.54e-19 | 73 |
gray matter | 2.12e-17 | 34 |
brain grey matter | 3.55e-16 | 29 |
regional part of telencephalon | 3.55e-16 | 29 |
telencephalon | 3.55e-16 | 29 |
cerebral cortex | 3.12e-13 | 21 |
cerebral hemisphere | 3.12e-13 | 21 |
pallium | 3.12e-13 | 21 |
structure with developmental contribution from neural crest | 4.91e-13 | 92 |
regional part of cerebral cortex | 3.31e-10 | 17 |
occipital lobe | 6.80e-07 | 10 |
visual cortex | 6.80e-07 | 10 |
neocortex | 6.80e-07 | 10 |