FFCP PHASE1:Mm9::chr13:43711319..43711360,+: Difference between revisions
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{{FFCP|EntrezGene=328234|HGNC=|MCL_coexpression_id=1342|UniProt=E0CZ87|association_with_transcript=0bp_to_ENSMUST00000161817_5end|description=CAGE_peak_1_at_Rnf182_5end|id=chr13:43711319..43711360,+|ontology_enrichment_celltype=CL:0000221!9.84e-18!44;CL:0000133!9.84e-18!44;CL:0002319!1.29e-17!43;CL:0000540!6.34e-17!33;CL:0000047!6.34e-17!33;CL:0000031!6.34e-17!33;CL:0000404!6.34e-17!33;CL:0000117!3.86e-15!23;CL:0000337!3.86e-15!23;CL:0000055!4.22e-12!50;CL:0000393!1.43e-11!39;CL:0000211!1.43e-11!39|ontology_enrichment_celltype_v019_2=CL:0000221,5.44e-20,44;CL:0000133,5.44e-20,44;CL:0002319,7.48e-20,43;CL:0000540,2.03e-19,33;CL:0000047,2.03e-19,33;CL:0000031,2.03e-19,33;CL:0000404,2.03e-19,33;CL:0000117,2.42e-17,23;CL:0000337,2.42e-17,23;CL:0000393,5.28e-14,39;CL:0000211,5.28e-14,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.90e-31!73;UBERON:0005743!4.90e-31!73;UBERON:0000073!4.83e-30!75;UBERON:0001016!4.83e-30!75;UBERON:0004121!7.88e-27!102;UBERON:0000924!7.88e-27!102;UBERON:0006601!7.88e-27!102;UBERON:0000033!1.09e-22!63;UBERON:0002346!1.78e-22!71;UBERON:0003075!1.78e-22!71;UBERON:0007284!1.78e-22!71;UBERON:0001049!8.10e-22!52;UBERON:0005068!8.10e-22!52;UBERON:0006241!8.10e-22!52;UBERON:0007135!8.10e-22!52;UBERON:0000955!2.82e-20!50;UBERON:0006238!2.82e-20!50;UBERON:0002616!6.77e-20!49;UBERON:0003056!6.15e-19!49;UBERON:0002020!5.33e-18!34;UBERON:0003080!3.50e-16!40;UBERON:0002780!1.34e-15!39;UBERON:0001890!1.34e-15!39;UBERON:0006240!1.34e-15!39;UBERON:0002791!5.38e-15!29;UBERON:0003528!5.38e-15!29;UBERON:0001893!5.38e-15!29;UBERON:0000153!5.58e-11!94;UBERON:0000956!1.80e-10!21;UBERON:0001869!1.80e-10!21;UBERON:0000203!1.80e-10!21;UBERON:0007811!9.40e-10!86;UBERON:0000468!2.02e-08!333;UBERON:0002619!6.16e-08!17;UBERON:0000922!6.28e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.81e-36,73;UBERON:0001016,1.36e-34,75;UBERON:0004121,2.51e-32,95;UBERON:0000924,2.51e-32,95;UBERON:0006601,2.51e-32,95;UBERON:0002346,4.01e-30,64;UBERON:0003075,4.01e-30,64;UBERON:0007284,4.01e-30,64;UBERON:0000073,3.83e-27,54;UBERON:0010371,4.86e-26,73;UBERON:0001049,1.04e-25,52;UBERON:0005068,1.04e-25,52;UBERON:0006241,1.04e-25,52;UBERON:0007135,1.04e-25,52;UBERON:0003056,4.82e-22,49;UBERON:0000955,7.23e-22,47;UBERON:0006238,7.23e-22,47;UBERON:0002616,1.96e-21,46;UBERON:0002020,1.14e-20,34;UBERON:0003080,7.71e-19,40;UBERON:0002780,3.69e-18,39;UBERON:0001890,3.69e-18,39;UBERON:0006240,3.69e-18,39;UBERON:0010314,7.69e-18,92;UBERON:0003528,3.55e-17,29;UBERON:0002791,3.55e-17,29;UBERON:0001893,3.55e-17,29;UBERON:0000956,6.47e-12,21;UBERON:0001869,6.47e-12,21;UBERON:0000203,6.47e-12,21;UBERON:0002619,5.66e-09,17;UBERON:0003076,2.05e-07,12;UBERON:0003057,2.05e-07,12;UBERON:0000922,4.68e-07,320|phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0,0.234064526321993,0.171217968225505,0,0,0,0,0,0,0,0,0,2.72138528483423,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14247797122848,5.71184075109627,4.08302788055995,3.3596741190087,10.062679505548,0,0,0,0,0.573066879877513,0,15.7806839470486,16.398720357433,13.9442908771359,0,0,0.449949858640699,0,0,4.49400165777607,4.61061966385865,20.5305432370786,23.7610451463776,19.5602214056785,5.14171771926846,7.50953039235486,15.923803897944,15.814502718009,16.5459381589804,5.50579404996943,8.04430229936683,6.45147439676223,17.5408762681158,18.9379422256988,17.1901412283731,5.02529398202486,4.50210088025344,7.48711414106369,8.54422897873636,9.39653093274079,9.69277118291563,0.37863096666592,0.302286240427142,0,0,0,0,0,0,0.421333260395256,0,0,0,2.67602497575693,0,0,0,0,0,0,0.34255163915718,0,0.445326417194474,0.520455980298408,0.304465478312141,0.461230994512117,0.150722640552623,0.470354828542819,0.125666591329675,0.247194967734374,3.90418263683761,0,0.808834249737046,0,0.969750506270444,0,42.1604347696628,29.9508790743241,0,0,0,0,6.89036941262184,4.57500602818627,20.1046963380583,6.77914848749878,5.8814555185976,6.64921742590592,6.16516799657479,2.74966282395854,1.11966273549084,0.252722758433675,1.05220927943237,4.81445638962004,4.82794419310293,3.60124259610698,2.41127708537144,4.96666443804693,4.74020765053944,4.49768277886698,3.3631438196072,5.6047678162539,5.48407632486676,4.22282697993477,2.41115305670332,3.33656699070717,1.0447564995665,2.67516777330327,5.57295947091781,0,0,0,1.03562886267751,2.57978665979206,1.08037236876609,1.65721314909647,1.77087808572663,1.23413690309903,1.39520366850245,0.268273401399619,0.817357396570186,0.987359099480883,0.32833492815819,0.162137619091711,0.146199987425332,0.439100230582101,0.268412837520744,27.1274033647724,45.7925525087816,0,0,1.49301775374664,2.78684006232526,1.03093969057675,1.00841762311671,0.889512175379481,0.190225626112559,0,0.164698954724011,1.25667604400135,0,0.19496408711912,0,0.216138049874694,0,0.758671603812327,1.71372768914593,1.1270773567308,1.01825663922657,1.16371492300575,1.1221731182451,1.26473074248515,1.32849133181642,0.784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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:328234 | |||
|HGNC= | |||
|MCL_coexpression_id=1342 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E0CZ87 | |||
|association_with_transcript=0bp_to_ENSMUST00000161817_5end | |||
|cluster_id=chr13:43711319..43711360,+ | |||
|description=CAGE_peak_1_at_Rnf182_5end | |||
|id=chr13:43711319..43711360,+ | |||
|ontology_enrichment_celltype=CL:0000221!9.84e-18!44;CL:0000133!9.84e-18!44;CL:0002319!1.29e-17!43;CL:0000540!6.34e-17!33;CL:0000047!6.34e-17!33;CL:0000031!6.34e-17!33;CL:0000404!6.34e-17!33;CL:0000117!3.86e-15!23;CL:0000337!3.86e-15!23;CL:0000055!4.22e-12!50;CL:0000393!1.43e-11!39;CL:0000211!1.43e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.44e-20,44;CL:0000133,5.44e-20,44;CL:0002319,7.48e-20,43;CL:0000540,2.03e-19,33;CL:0000047,2.03e-19,33;CL:0000031,2.03e-19,33;CL:0000404,2.03e-19,33;CL:0000117,2.42e-17,23;CL:0000337,2.42e-17,23;CL:0000393,5.28e-14,39;CL:0000211,5.28e-14,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.90e-31!73;UBERON:0005743!4.90e-31!73;UBERON:0000073!4.83e-30!75;UBERON:0001016!4.83e-30!75;UBERON:0004121!7.88e-27!102;UBERON:0000924!7.88e-27!102;UBERON:0006601!7.88e-27!102;UBERON:0000033!1.09e-22!63;UBERON:0002346!1.78e-22!71;UBERON:0003075!1.78e-22!71;UBERON:0007284!1.78e-22!71;UBERON:0001049!8.10e-22!52;UBERON:0005068!8.10e-22!52;UBERON:0006241!8.10e-22!52;UBERON:0007135!8.10e-22!52;UBERON:0000955!2.82e-20!50;UBERON:0006238!2.82e-20!50;UBERON:0002616!6.77e-20!49;UBERON:0003056!6.15e-19!49;UBERON:0002020!5.33e-18!34;UBERON:0003080!3.50e-16!40;UBERON:0002780!1.34e-15!39;UBERON:0001890!1.34e-15!39;UBERON:0006240!1.34e-15!39;UBERON:0002791!5.38e-15!29;UBERON:0003528!5.38e-15!29;UBERON:0001893!5.38e-15!29;UBERON:0000153!5.58e-11!94;UBERON:0000956!1.80e-10!21;UBERON:0001869!1.80e-10!21;UBERON:0000203!1.80e-10!21;UBERON:0007811!9.40e-10!86;UBERON:0000468!2.02e-08!333;UBERON:0002619!6.16e-08!17;UBERON:0000922!6.28e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.81e-36,73;UBERON:0001016,1.36e-34,75;UBERON:0004121,2.51e-32,95;UBERON:0000924,2.51e-32,95;UBERON:0006601,2.51e-32,95;UBERON:0002346,4.01e-30,64;UBERON:0003075,4.01e-30,64;UBERON:0007284,4.01e-30,64;UBERON:0000073,3.83e-27,54;UBERON:0010371,4.86e-26,73;UBERON:0001049,1.04e-25,52;UBERON:0005068,1.04e-25,52;UBERON:0006241,1.04e-25,52;UBERON:0007135,1.04e-25,52;UBERON:0003056,4.82e-22,49;UBERON:0000955,7.23e-22,47;UBERON:0006238,7.23e-22,47;UBERON:0002616,1.96e-21,46;UBERON:0002020,1.14e-20,34;UBERON:0003080,7.71e-19,40;UBERON:0002780,3.69e-18,39;UBERON:0001890,3.69e-18,39;UBERON:0006240,3.69e-18,39;UBERON:0010314,7.69e-18,92;UBERON:0003528,3.55e-17,29;UBERON:0002791,3.55e-17,29;UBERON:0001893,3.55e-17,29;UBERON:0000956,6.47e-12,21;UBERON:0001869,6.47e-12,21;UBERON:0000203,6.47e-12,21;UBERON:0002619,5.66e-09,17;UBERON:0003076,2.05e-07,12;UBERON:0003057,2.05e-07,12;UBERON:0000922,4.68e-07,320 | |||
|phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0,0.234064526321993,0.171217968225505,0,0,0,0,0,0,0,0,0,2.72138528483423,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14247797122848,5.71184075109627,4.08302788055995,3.3596741190087,10.062679505548,0,0,0,0,0.573066879877513,0,15.7806839470486,16.398720357433,13.9442908771359,0,0,0.449949858640699,0,0,4.49400165777607,4.61061966385865,20.5305432370786,23.7610451463776,19.5602214056785,5.14171771926846,7.50953039235486,15.923803897944,15.814502718009,16.5459381589804,5.50579404996943,8.04430229936683,6.45147439676223,17.5408762681158,18.9379422256988,17.1901412283731,5.02529398202486,4.50210088025344,7.48711414106369,8.54422897873636,9.39653093274079,9.69277118291563,0.37863096666592,0.302286240427142,0,0,0,0,0,0,0.421333260395256,0,0,0,2.67602497575693,0,0,0,0,0,0,0.34255163915718,0,0.445326417194474,0.520455980298408,0.304465478312141,0.461230994512117,0.150722640552623,0.470354828542819,0.125666591329675,0.247194967734374,3.90418263683761,0,0.808834249737046,0,0.969750506270444,0,42.1604347696628,29.9508790743241,0,0,0,0,6.89036941262184,4.57500602818627,20.1046963380583,6.77914848749878,5.8814555185976,6.64921742590592,6.16516799657479,2.74966282395854,1.11966273549084,0.252722758433675,1.05220927943237,4.81445638962004,4.82794419310293,3.60124259610698,2.41127708537144,4.96666443804693,4.74020765053944,4.49768277886698,3.3631438196072,5.6047678162539,5.48407632486676,4.22282697993477,2.41115305670332,3.33656699070717,1.0447564995665,2.67516777330327,5.57295947091781,0,0,0,1.03562886267751,2.57978665979206,1.08037236876609,1.65721314909647,1.77087808572663,1.23413690309903,1.39520366850245,0.268273401399619,0.817357396570186,0.987359099480883,0.32833492815819,0.162137619091711,0.146199987425332,0.439100230582101,0.268412837520744,27.1274033647724,45.7925525087816,0,0,1.49301775374664,2.78684006232526,1.03093969057675,1.00841762311671,0.889512175379481,0.190225626112559,0,0.164698954724011,1.25667604400135,0,0.19496408711912,0,0.216138049874694,0,0.758671603812327,1.71372768914593,1.1270773567308,1.01825663922657,1.16371492300575,1.1221731182451,1.26473074248515,1.32849133181642,0.784993639206874,0.740382983530803,0,0.667380422864376,0.786235980452812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89491411770485,2.28150967018836,2.20668611507745,1.17345124144251,1.34005005953453,0.238043640886014,0,1.10344600874334,0.8858587585951,1.11618338060241,0.163863314715738,0.345369963731791,0,0,0,0,0,7.22477654945064,6.91548950893999,0,0.252470927204373,2.83957397474631,3.12350995437311,4.09304455692318,5.9742199488138,3.34198011123591,5.09537755419898,2.02405350837447,3.50707029493574,2.76701444562566,4.17717711348349,0.567760340833074,2.49291845134157,2.76907830901079,1.48473110675282,0,0.728341908464944,0.604647113929502,0.188605079755898,0.590603785761546,0.307435147943927,0.258428293168221,0.727067458955011,0.712994756769443,0,0,0,0,4.14140516272013,3.23396709456886,4.28674070063185,2.48276327099183,1.24858172321449,1.48094118541909,1.2178597964584,1.40803024838226,0.63549621259146,0.220528398054962,0,0.968786560175433,0.603129249281559,1.19372344003136,1.14898629821543,0.582961673259701,5.93360966433631,0,1.44470807574256,0.555583582109135,0,0,0,0,0,0,0.954670618015114,1.26534397432454,0.609958401380546,0.648032044930808,0.627264888043406,0.655087691238533,0.539457385539283,0.578574190077352,0.523511883968059,0.129614973291793,0.621339313086926,1.12738587736838,4.63501292736334,2.97825282822776,2.52786544847262,2.0665571756437,0.675824501963113,2.11243029562357,0.781226309063701,0.838874755405687,0.483168241652012,0.288030006257865,0,0,0.718976700153791,0.129920822977795,0.179026695667481,0,0,0,0.100966449948148,0.15241361331,0.100826185136841,0,0,0,0.453460767230423,0.221985953374065,0.0897138566094757,0.335769232728157,0.386379188064381,1.68914227906064,0.183151624267265,0.428736758158132,0,2.25900737046827,5.06357760157895,1.71868654031819,6.8741272937475,6.16574267793578,3.0215755895588,2.70009000092722,3.15224842256954,4.53142408984205,4.65984280576638,3.63255716544618,5.98537310101547,3.41467211508268,2.91728060481953,2.51535795153579,1.83843508450014,2.889207461421,3.29656091582231,4.49286893428541,3.53776096469316,4.30914809813408,3.2066478035633,4.21386783614471,4.54578582074572,3.9056118889817,3.33405583898152,3.82418275618023,2.50781986602817,2.06042950401653,3.23837624295674,4.11443102862498,3.90446773550542,2.86123427936785,4.21504608233753,3.67026583619789,3.13074049199203,4.20734337607377,4.99832451731901,3.66671107383827,3.36685362994643,3.32178050747688,2.1670986122624,3.6830793885272,2.78886314134739,2.50778594275484,6.49507502638659,3.27504251823572,1.93383948643468,0.57386499620653,0.441182838239031,0.463735671240843 | |||
|short_description=p1@Rnf182 | |||
}} |
Revision as of 00:27, 6 August 2015
Short description: | p1@Rnf182 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rnf182_5end |
Coexpression cluster: | MCL_coexpression_mm9:1342 |
Association with transcript: | 0bp_to_ENSMUST00000161817_5end |
EntrezGene: | 328234 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.44e-20 | 44 |
neurectodermal cell | 5.44e-20 | 44 |
neural cell | 7.48e-20 | 43 |
neuron | 2.03e-19 | 33 |
neuronal stem cell | 2.03e-19 | 33 |
neuroblast | 2.03e-19 | 33 |
electrically signaling cell | 2.03e-19 | 33 |
CNS neuron (sensu Vertebrata) | 2.42e-17 | 23 |
neuroblast (sensu Vertebrata) | 2.42e-17 | 23 |
electrically responsive cell | 5.28e-14 | 39 |
electrically active cell | 5.28e-14 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.81e-36 | 73 |
nervous system | 1.36e-34 | 75 |
ectoderm-derived structure | 2.51e-32 | 95 |
ectoderm | 2.51e-32 | 95 |
presumptive ectoderm | 2.51e-32 | 95 |
neurectoderm | 4.01e-30 | 64 |
neural plate | 4.01e-30 | 64 |
presumptive neural plate | 4.01e-30 | 64 |
regional part of nervous system | 3.83e-27 | 54 |
ecto-epithelium | 4.86e-26 | 73 |
neural tube | 1.04e-25 | 52 |
neural rod | 1.04e-25 | 52 |
future spinal cord | 1.04e-25 | 52 |
neural keel | 1.04e-25 | 52 |
pre-chordal neural plate | 4.82e-22 | 49 |
brain | 7.23e-22 | 47 |
future brain | 7.23e-22 | 47 |
regional part of brain | 1.96e-21 | 46 |
gray matter | 1.14e-20 | 34 |
anterior neural tube | 7.71e-19 | 40 |
regional part of forebrain | 3.69e-18 | 39 |
forebrain | 3.69e-18 | 39 |
future forebrain | 3.69e-18 | 39 |
structure with developmental contribution from neural crest | 7.69e-18 | 92 |
brain grey matter | 3.55e-17 | 29 |
regional part of telencephalon | 3.55e-17 | 29 |
telencephalon | 3.55e-17 | 29 |
cerebral cortex | 6.47e-12 | 21 |
cerebral hemisphere | 6.47e-12 | 21 |
pallium | 6.47e-12 | 21 |
regional part of cerebral cortex | 5.66e-09 | 17 |
posterior neural tube | 2.05e-07 | 12 |
chordal neural plate | 2.05e-07 | 12 |
embryo | 4.68e-07 | 320 |