FFCP PHASE1:Mm9::chr11:62364950..62364959,+: Difference between revisions
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{{FFCP|EntrezGene=22187|HGNC=|MCL_coexpression_id=0|UniProt=E9Q0Z8|association_with_transcript=-44bp_to_ENSMUST00000168766_5end|description=CAGE_peak_5_at_Ubb_5end|id=chr11:62364950..62364959,+|ontology_enrichment_celltype=CL:0000117!1.05e-07!23;CL:0000337!1.05e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,4.32e-08,23;CL:0000337,4.32e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.10e-16!52;UBERON:0005068!1.10e-16!52;UBERON:0006241!1.10e-16!52;UBERON:0007135!1.10e-16!52;UBERON:0000955!3.14e-16!50;UBERON:0006238!3.14e-16!50;UBERON:0002616!6.35e-16!49;UBERON:0003080!1.50e-14!40;UBERON:0002780!6.31e-14!39;UBERON:0001890!6.31e-14!39;UBERON:0006240!6.31e-14!39;UBERON:0002020!1.76e-13!34;UBERON:0000033!5.91e-13!63;UBERON:0007811!1.40e-12!86;UBERON:0003056!2.20e-12!49;UBERON:0002346!2.35e-12!71;UBERON:0003075!2.35e-12!71;UBERON:0007284!2.35e-12!71;UBERON:0001017!2.90e-12!73;UBERON:0005743!2.90e-12!73;UBERON:0002791!4.42e-12!29;UBERON:0003528!4.42e-12!29;UBERON:0001893!4.42e-12!29;UBERON:0000153!9.08e-12!94;UBERON:0000073!1.27e-11!75;UBERON:0001016!1.27e-11!75;UBERON:0000956!3.80e-08!21;UBERON:0001869!3.80e-08!21;UBERON:0000203!3.80e-08!21;UBERON:0004121!3.34e-07!102;UBERON:0000924!3.34e-07!102;UBERON:0006601!3.34e-07!102;UBERON:0002619!3.69e-07!17;UBERON:0002021!5.06e-07!10;UBERON:0000411!5.06e-07!10;UBERON:0001950!5.06e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.10e-20,54;UBERON:0001049,3.96e-19,52;UBERON:0005068,3.96e-19,52;UBERON:0006241,3.96e-19,52;UBERON:0007135,3.96e-19,52;UBERON:0000955,4.81e-17,47;UBERON:0006238,4.81e-17,47;UBERON:0002616,1.12e-16,46;UBERON:0003080,2.99e-16,40;UBERON:0002780,1.68e-15,39;UBERON:0001890,1.68e-15,39;UBERON:0006240,1.68e-15,39;UBERON:0002020,1.73e-15,34;UBERON:0002346,1.20e-14,64;UBERON:0003075,1.20e-14,64;UBERON:0007284,1.20e-14,64;UBERON:0003528,9.27e-14,29;UBERON:0002791,9.27e-14,29;UBERON:0001893,9.27e-14,29;UBERON:0003056,2.77e-13,49;UBERON:0001017,3.92e-13,73;UBERON:0001016,2.96e-12,75;UBERON:0010371,1.23e-11,73;UBERON:0000956,5.60e-09,21;UBERON:0001869,5.60e-09,21;UBERON:0000203,5.60e-09,21;UBERON:0002619,2.24e-08,17;UBERON:0002021,2.72e-08,10;UBERON:0000411,2.72e-08,10;UBERON:0001950,2.72e-08,10;UBERON:0004121,6.80e-08,95;UBERON:0000924,6.80e-08,95;UBERON:0006601,6.80e-08,95;UBERON:0010314,1.54e-07,92|phase1_expression=1.44133962394315,0,0.454999239389536,0,0,0.33575854382378,0,0.516493293766305,0.703943610758334,2.34064526321993,1.02730780935303,0.957265907944037,0.513602189793617,0.262261207256992,3.33109761815663,3.23960427823721,5.59649502502517,0.315462165358238,0.685572168028694,1.27316895539409,13.9470995847754,0.198581902401771,1.56719873483361,0.159992422793407,0.68822784320151,0,0.430761996159075,0.215471232685889,0.570070258369122,0.252030129759931,0.443461021310609,0.635030673459631,1.23012957516914,0,1.1554064790051,0.664938581433969,0.408338712524738,1.25559489221072,3.1253413780952,2.61761871986899,2.35292595212406,0.683045484958446,1.45653105909346,0.755380907853464,1.31790010585369,0.734187008646726,0,0.65407546914134,0.878744730937887,0,0.699932108126813,0,1.00669563634642,2.17608642603403,0.672187598284928,0.514518872071894,0.286533439938757,0,0.809265843438391,1.05798195854407,1.26766280701236,0.677689064138264,0.889294796111139,0,0.988866362566974,0,0.299600110518405,0.384218305321555,0.933206510776299,1.89008313664367,2.52389953621658,3.14216082844184,3.3130281142742,1.83736198822431,2.30029130443767,2.75765635983006,2.20231761998777,3.44755812830007,1.99688493233117,1.45074916503213,2.19570344645783,3.64639359389732,5.58365998002762,3.93933827022176,5.19514042441154,1.47314292736834,2.13557521198654,1.1183966749518,0.37863096666592,0.604572480854284,0.579728977403356,0,0,0.539703191637817,0,0,3.08977724289854,0.852151612890289,0,0,0.563373679106722,0,0,0,0.649473123033642,0,0,2.39786147410026,0.258937883647172,0.29688427812965,1.90833859442749,1.52232739156071,0.922461989024234,0.452167921657868,0.587943535678524,0,0.988779870937496,0.433798070759735,0,0.647067399789637,2.65009822152472,0.484875253135222,0,2.63502717310392,1.67557365450764,0,2.51611761462433,3.59941638596045,1.01656181658452,4.94309110035915,3.66000482254901,4.64921102817598,3.47648640384553,4.85859368927628,5.61027720310812,3.89379031362618,1.01839363850316,0.746441823660558,0.758168275301024,0,1.04096354370163,1.83921683546778,1.26043490863744,0.452114453507145,0.816437989815934,1.40925092313335,0.655912071918102,0.517406741478031,2.37124792226126,1.13463648100692,1.40760899331159,1.09597866213787,0.278047249225598,0.696504333044333,0.205782136407943,0.59710280045548,1.40442637462647,2.31613116403244,2.55747149456033,1.44988040774851,0.469052119962192,1.44049649168812,0.710234206755631,1.18058539048442,0.771335564436891,0.232533944750408,0.536546802799238,0.817357396570186,0.329119699826961,0.32833492815819,0.0810688095458557,0.146199987425332,0.219550115291051,0.134206418760372,4.20579897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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:22187 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q0Z8 | |||
|association_with_transcript=-44bp_to_ENSMUST00000168766_5end | |||
|cluster_id=chr11:62364950..62364959,+ | |||
|description=CAGE_peak_5_at_Ubb_5end | |||
|id=chr11:62364950..62364959,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.05e-07!23;CL:0000337!1.05e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.32e-08,23;CL:0000337,4.32e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.10e-16!52;UBERON:0005068!1.10e-16!52;UBERON:0006241!1.10e-16!52;UBERON:0007135!1.10e-16!52;UBERON:0000955!3.14e-16!50;UBERON:0006238!3.14e-16!50;UBERON:0002616!6.35e-16!49;UBERON:0003080!1.50e-14!40;UBERON:0002780!6.31e-14!39;UBERON:0001890!6.31e-14!39;UBERON:0006240!6.31e-14!39;UBERON:0002020!1.76e-13!34;UBERON:0000033!5.91e-13!63;UBERON:0007811!1.40e-12!86;UBERON:0003056!2.20e-12!49;UBERON:0002346!2.35e-12!71;UBERON:0003075!2.35e-12!71;UBERON:0007284!2.35e-12!71;UBERON:0001017!2.90e-12!73;UBERON:0005743!2.90e-12!73;UBERON:0002791!4.42e-12!29;UBERON:0003528!4.42e-12!29;UBERON:0001893!4.42e-12!29;UBERON:0000153!9.08e-12!94;UBERON:0000073!1.27e-11!75;UBERON:0001016!1.27e-11!75;UBERON:0000956!3.80e-08!21;UBERON:0001869!3.80e-08!21;UBERON:0000203!3.80e-08!21;UBERON:0004121!3.34e-07!102;UBERON:0000924!3.34e-07!102;UBERON:0006601!3.34e-07!102;UBERON:0002619!3.69e-07!17;UBERON:0002021!5.06e-07!10;UBERON:0000411!5.06e-07!10;UBERON:0001950!5.06e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.10e-20,54;UBERON:0001049,3.96e-19,52;UBERON:0005068,3.96e-19,52;UBERON:0006241,3.96e-19,52;UBERON:0007135,3.96e-19,52;UBERON:0000955,4.81e-17,47;UBERON:0006238,4.81e-17,47;UBERON:0002616,1.12e-16,46;UBERON:0003080,2.99e-16,40;UBERON:0002780,1.68e-15,39;UBERON:0001890,1.68e-15,39;UBERON:0006240,1.68e-15,39;UBERON:0002020,1.73e-15,34;UBERON:0002346,1.20e-14,64;UBERON:0003075,1.20e-14,64;UBERON:0007284,1.20e-14,64;UBERON:0003528,9.27e-14,29;UBERON:0002791,9.27e-14,29;UBERON:0001893,9.27e-14,29;UBERON:0003056,2.77e-13,49;UBERON:0001017,3.92e-13,73;UBERON:0001016,2.96e-12,75;UBERON:0010371,1.23e-11,73;UBERON:0000956,5.60e-09,21;UBERON:0001869,5.60e-09,21;UBERON:0000203,5.60e-09,21;UBERON:0002619,2.24e-08,17;UBERON:0002021,2.72e-08,10;UBERON:0000411,2.72e-08,10;UBERON:0001950,2.72e-08,10;UBERON:0004121,6.80e-08,95;UBERON:0000924,6.80e-08,95;UBERON:0006601,6.80e-08,95;UBERON:0010314,1.54e-07,92 | |||
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| |||
|short_description=p5@Ubb | |||
}} |
Revision as of 06:44, 6 August 2015
Short description: | p5@Ubb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Ubb_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -44bp_to_ENSMUST00000168766_5end |
EntrezGene: | 22187 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.32e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.32e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 4.10e-20 | 54 |
neural tube | 3.96e-19 | 52 |
neural rod | 3.96e-19 | 52 |
future spinal cord | 3.96e-19 | 52 |
neural keel | 3.96e-19 | 52 |
brain | 4.81e-17 | 47 |
future brain | 4.81e-17 | 47 |
regional part of brain | 1.12e-16 | 46 |
anterior neural tube | 2.99e-16 | 40 |
regional part of forebrain | 1.68e-15 | 39 |
forebrain | 1.68e-15 | 39 |
future forebrain | 1.68e-15 | 39 |
gray matter | 1.73e-15 | 34 |
neurectoderm | 1.20e-14 | 64 |
neural plate | 1.20e-14 | 64 |
presumptive neural plate | 1.20e-14 | 64 |
brain grey matter | 9.27e-14 | 29 |
regional part of telencephalon | 9.27e-14 | 29 |
telencephalon | 9.27e-14 | 29 |
pre-chordal neural plate | 2.77e-13 | 49 |
central nervous system | 3.92e-13 | 73 |
nervous system | 2.96e-12 | 75 |
ecto-epithelium | 1.23e-11 | 73 |
cerebral cortex | 5.60e-09 | 21 |
cerebral hemisphere | 5.60e-09 | 21 |
pallium | 5.60e-09 | 21 |
regional part of cerebral cortex | 2.24e-08 | 17 |
occipital lobe | 2.72e-08 | 10 |
visual cortex | 2.72e-08 | 10 |
neocortex | 2.72e-08 | 10 |
ectoderm-derived structure | 6.80e-08 | 95 |
ectoderm | 6.80e-08 | 95 |
presumptive ectoderm | 6.80e-08 | 95 |
structure with developmental contribution from neural crest | 1.54e-07 | 92 |