FFCP PHASE1:Mm9::chrX:97925319..97925333,+: Difference between revisions
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{{FFCP|EntrezGene=71584|HGNC=|MCL_coexpression_id=310|UniProt=Q9ESM6|association_with_transcript=38bp_to_ENSMUST00000019503_5end|description=CAGE_peak_2_at_Gdpd2_5end|id=chrX:97925319..97925333,+|ontology_enrichment_celltype=CL:0002319!1.73e-18!43;CL:0000221!2.56e-18!44;CL:0000133!2.56e-18!44;CL:0000055!5.95e-17!50;CL:0000540!6.32e-14!33;CL:0000047!6.32e-14!33;CL:0000031!6.32e-14!33;CL:0000404!6.32e-14!33;CL:0000393!2.67e-13!39;CL:0000211!2.67e-13!39;CL:0000117!1.16e-10!23;CL:0000337!1.16e-10!23;CL:0002321!2.62e-08!70;CL:0000220!2.62e-08!70|ontology_enrichment_celltype_v019_2=CL:0002319,3.98e-22,43;CL:0000221,3.16e-21,44;CL:0000133,3.16e-21,44;CL:0000540,1.27e-16,33;CL:0000047,1.27e-16,33;CL:0000031,1.27e-16,33;CL:0000404,1.27e-16,33;CL:0000393,3.96e-16,39;CL:0000211,3.96e-16,39;CL:0000117,3.13e-13,23;CL:0000337,3.13e-13,23;CL:0002321,1.83e-11,70;CL:0002453,1.20e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.35e-27!73;UBERON:0005743!1.35e-27!73;UBERON:0000073!3.82e-27!75;UBERON:0001016!3.82e-27!75;UBERON:0004121!1.24e-20!102;UBERON:0000924!1.24e-20!102;UBERON:0006601!1.24e-20!102;UBERON:0001049!5.69e-17!52;UBERON:0005068!5.69e-17!52;UBERON:0006241!5.69e-17!52;UBERON:0007135!5.69e-17!52;UBERON:0002346!1.25e-15!71;UBERON:0003075!1.25e-15!71;UBERON:0007284!1.25e-15!71;UBERON:0002616!6.90e-15!49;UBERON:0000955!7.12e-15!50;UBERON:0006238!7.12e-15!50;UBERON:0000033!8.27e-13!63;UBERON:0002020!1.59e-12!34;UBERON:0003080!2.75e-11!40;UBERON:0002780!7.71e-11!39;UBERON:0001890!7.71e-11!39;UBERON:0006240!7.71e-11!39;UBERON:0003056!1.10e-10!49;UBERON:0002791!1.73e-09!29;UBERON:0003528!1.73e-09!29;UBERON:0001893!1.73e-09!29;UBERON:0003076!8.12e-07!12;UBERON:0003057!8.12e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.47e-30,73;UBERON:0001016,6.71e-30,75;UBERON:0000073,2.26e-20,54;UBERON:0004121,9.57e-20,95;UBERON:0000924,9.57e-20,95;UBERON:0006601,9.57e-20,95;UBERON:0001049,5.26e-19,52;UBERON:0005068,5.26e-19,52;UBERON:0006241,5.26e-19,52;UBERON:0007135,5.26e-19,52;UBERON:0002346,7.91e-17,64;UBERON:0003075,7.91e-17,64;UBERON:0007284,7.91e-17,64;UBERON:0002020,7.59e-15,34;UBERON:0002616,1.41e-14,46;UBERON:0000955,5.89e-14,47;UBERON:0006238,5.89e-14,47;UBERON:0003080,1.55e-12,40;UBERON:0010371,1.73e-12,73;UBERON:0002780,5.42e-12,39;UBERON:0001890,5.42e-12,39;UBERON:0006240,5.42e-12,39;UBERON:0003528,4.26e-11,29;UBERON:0002791,4.26e-11,29;UBERON:0001893,4.26e-11,29;UBERON:0003056,1.96e-09,49;UBERON:0003076,1.47e-07,12;UBERON:0003057,1.47e-07,12;UBERON:0010314,5.93e-07,92|phase1_expression=0.640595388419176,0.348975407639361,0.454999239389536,0.30246421130683,0,0,0,0,0,0,0,0,0,0,0.999329285446988,2.63217847606774,0,0.315462165358238,0.137114433605739,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.3091899863881,5.5757312170733,11.0128051297009,1.56478268869608,74.1285531693518,82.8216908908959,73.4945018500791,34.8566189847153,57.5010257459886,0,0,0,0,0.286533439938757,0,12.9482534950143,15.340738398889,11.4089652631112,4.40497891689872,2.66788438833342,0,0,0,21.5712079573251,31.5059010363675,1.97010263386108,2.02508907497536,1.05162480675691,21.1381728458815,18.5529574399355,1.71487118900936,1.43768206527355,0,11.0115880999389,6.51205424234457,7.0659005297872,13.58428763621,13.8146341839639,11.9810075228055,8.09630697104005,8.4414391504752,10.3902808488231,17.9723437138937,16.2303716110977,12.8615617619457,0.075726193333184,1.20914496170857,0,0,0,0,0,0,1.68533304158102,0.170430322578058,0.259786004602869,0.35333957451034,0.704217098883403,1.28326477414318,7.64415719119937,0,0,0,0,1.1418387971906,0,0,0.520455980298408,1.21786191324856,0.691846491768175,0.150722640552623,0.587943535678524,0,0.247194967734374,0,14.153768831198,1.94120219936891,3.09178125844551,4.84875253135222,0,2.92780797011547,0.41889341362691,0,0,0,0,5.24267237916879,4.11750542536764,2.63874139437015,2.08589184230732,0.767146371990992,6.2336413367868,5.353961681236,2.34230536855727,4.47865094196335,0.252722758433675,0,0.910843100738926,0.459804208866946,0.900310649026746,1.80845781402858,0.884474488967262,0.640568601424249,0.562210347358373,1.81092359517311,0,0,0.175951124163949,1.31517439456545,0.278047249225598,1.0447564995665,2.05782136407943,1.79130840136644,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0.162137619091711,0.146199987425332,0.219550115291051,0,3.99550902271842,5.76265829323993,0,0.264450566663544,0,0,0,0.403367049246685,0,0,0,0,0.251335208800269,0,0,0,0,0,0.379335801906163,0.342745537829186,0,0.203651327845314,0,0.420814919341911,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0.372140947668503,0,0,0,0,0.369506380333209,0.37898282354097,0,0.169745085775188,0.234690248288502,0.335012514883631,3.57065461329021,3.90267295715598,0.472905432318573,0.221464689648775,0.318909537314974,0.163863314715738,1.03610989119537,2.60368305446721,0,0,0,0,9.15138362930414,5.97779601620236,1.96721934452011,0.252470927204373,2.8395739747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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:71584 | |||
|HGNC= | |||
|MCL_coexpression_id=310 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9ESM6 | |||
|association_with_transcript=38bp_to_ENSMUST00000019503_5end | |||
|cluster_id=chrX:97925319..97925333,+ | |||
|description=CAGE_peak_2_at_Gdpd2_5end | |||
|id=chrX:97925319..97925333,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.73e-18!43;CL:0000221!2.56e-18!44;CL:0000133!2.56e-18!44;CL:0000055!5.95e-17!50;CL:0000540!6.32e-14!33;CL:0000047!6.32e-14!33;CL:0000031!6.32e-14!33;CL:0000404!6.32e-14!33;CL:0000393!2.67e-13!39;CL:0000211!2.67e-13!39;CL:0000117!1.16e-10!23;CL:0000337!1.16e-10!23;CL:0002321!2.62e-08!70;CL:0000220!2.62e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.98e-22,43;CL:0000221,3.16e-21,44;CL:0000133,3.16e-21,44;CL:0000540,1.27e-16,33;CL:0000047,1.27e-16,33;CL:0000031,1.27e-16,33;CL:0000404,1.27e-16,33;CL:0000393,3.96e-16,39;CL:0000211,3.96e-16,39;CL:0000117,3.13e-13,23;CL:0000337,3.13e-13,23;CL:0002321,1.83e-11,70;CL:0002453,1.20e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.35e-27!73;UBERON:0005743!1.35e-27!73;UBERON:0000073!3.82e-27!75;UBERON:0001016!3.82e-27!75;UBERON:0004121!1.24e-20!102;UBERON:0000924!1.24e-20!102;UBERON:0006601!1.24e-20!102;UBERON:0001049!5.69e-17!52;UBERON:0005068!5.69e-17!52;UBERON:0006241!5.69e-17!52;UBERON:0007135!5.69e-17!52;UBERON:0002346!1.25e-15!71;UBERON:0003075!1.25e-15!71;UBERON:0007284!1.25e-15!71;UBERON:0002616!6.90e-15!49;UBERON:0000955!7.12e-15!50;UBERON:0006238!7.12e-15!50;UBERON:0000033!8.27e-13!63;UBERON:0002020!1.59e-12!34;UBERON:0003080!2.75e-11!40;UBERON:0002780!7.71e-11!39;UBERON:0001890!7.71e-11!39;UBERON:0006240!7.71e-11!39;UBERON:0003056!1.10e-10!49;UBERON:0002791!1.73e-09!29;UBERON:0003528!1.73e-09!29;UBERON:0001893!1.73e-09!29;UBERON:0003076!8.12e-07!12;UBERON:0003057!8.12e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.47e-30,73;UBERON:0001016,6.71e-30,75;UBERON:0000073,2.26e-20,54;UBERON:0004121,9.57e-20,95;UBERON:0000924,9.57e-20,95;UBERON:0006601,9.57e-20,95;UBERON:0001049,5.26e-19,52;UBERON:0005068,5.26e-19,52;UBERON:0006241,5.26e-19,52;UBERON:0007135,5.26e-19,52;UBERON:0002346,7.91e-17,64;UBERON:0003075,7.91e-17,64;UBERON:0007284,7.91e-17,64;UBERON:0002020,7.59e-15,34;UBERON:0002616,1.41e-14,46;UBERON:0000955,5.89e-14,47;UBERON:0006238,5.89e-14,47;UBERON:0003080,1.55e-12,40;UBERON:0010371,1.73e-12,73;UBERON:0002780,5.42e-12,39;UBERON:0001890,5.42e-12,39;UBERON:0006240,5.42e-12,39;UBERON:0003528,4.26e-11,29;UBERON:0002791,4.26e-11,29;UBERON:0001893,4.26e-11,29;UBERON:0003056,1.96e-09,49;UBERON:0003076,1.47e-07,12;UBERON:0003057,1.47e-07,12;UBERON:0010314,5.93e-07,92 | |||
|phase1_expression=0.640595388419176,0.348975407639361,0.454999239389536,0.30246421130683,0,0,0,0,0,0,0,0,0,0,0.999329285446988,2.63217847606774,0,0.315462165358238,0.137114433605739,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.3091899863881,5.5757312170733,11.0128051297009,1.56478268869608,74.1285531693518,82.8216908908959,73.4945018500791,34.8566189847153,57.5010257459886,0,0,0,0,0.286533439938757,0,12.9482534950143,15.340738398889,11.4089652631112,4.40497891689872,2.66788438833342,0,0,0,21.5712079573251,31.5059010363675,1.97010263386108,2.02508907497536,1.05162480675691,21.1381728458815,18.5529574399355,1.71487118900936,1.43768206527355,0,11.0115880999389,6.51205424234457,7.0659005297872,13.58428763621,13.8146341839639,11.9810075228055,8.09630697104005,8.4414391504752,10.3902808488231,17.9723437138937,16.2303716110977,12.8615617619457,0.075726193333184,1.20914496170857,0,0,0,0,0,0,1.68533304158102,0.170430322578058,0.259786004602869,0.35333957451034,0.704217098883403,1.28326477414318,7.64415719119937,0,0,0,0,1.1418387971906,0,0,0.520455980298408,1.21786191324856,0.691846491768175,0.150722640552623,0.587943535678524,0,0.247194967734374,0,14.153768831198,1.94120219936891,3.09178125844551,4.84875253135222,0,2.92780797011547,0.41889341362691,0,0,0,0,5.24267237916879,4.11750542536764,2.63874139437015,2.08589184230732,0.767146371990992,6.2336413367868,5.353961681236,2.34230536855727,4.47865094196335,0.252722758433675,0,0.910843100738926,0.459804208866946,0.900310649026746,1.80845781402858,0.884474488967262,0.640568601424249,0.562210347358373,1.81092359517311,0,0,0.175951124163949,1.31517439456545,0.278047249225598,1.0447564995665,2.05782136407943,1.79130840136644,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0.162137619091711,0.146199987425332,0.219550115291051,0,3.99550902271842,5.76265829323993,0,0.264450566663544,0,0,0,0.403367049246685,0,0,0,0,0.251335208800269,0,0,0,0,0,0.379335801906163,0.342745537829186,0,0.203651327845314,0,0.420814919341911,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0.372140947668503,0,0,0,0,0.369506380333209,0.37898282354097,0,0.169745085775188,0.234690248288502,0.335012514883631,3.57065461329021,3.90267295715598,0.472905432318573,0.221464689648775,0.318909537314974,0.163863314715738,1.03610989119537,2.60368305446721,0,0,0,0,9.15138362930414,5.97779601620236,1.96721934452011,0.252470927204373,2.83957397474631,2.73307121007647,10.5557464889071,4.54040716109849,3.11918143715352,2.54768877709949,3.64329631507405,2.92255857911312,2.37172666767914,0.963963949265421,6.52924391958036,3.73937767701236,1.79175655288934,5.27904393512113,0,0.728341908464944,0.604647113929502,0.565815239267694,1.18120757152309,0,0.775284879504663,0.727067458955011,0,0.632073515871632,0,0,0.340439605753788,1.44048875225048,1.4229455216103,1.71469628025274,0.532020700926821,1.07021290561242,1.48094118541909,2.13125464380219,6.10146440965647,0.847328283455281,0,0.32977250588296,0.645857706783622,0.542816324353403,0.358117032009409,0.492422699235184,0.582961673259701,7.6024373824309,23.7510524309015,28.2750009109615,52.039662190889,12.4323181623096,15.8565304156389,18.7598102029349,0,0,0,0.954670618015114,0,1.82987520414164,1.29606408986162,3.55450103224597,3.49380101993884,1.07891477107857,0.41326727862668,0.26175594198403,0,0,0,0.448549638131936,0,0.194451188344048,0.387479470433193,0.506868376472335,0.352071715937262,0.39061315453185,0.104859344425711,0.241584120826006,0,0,0.202725215290164,0.616265742988964,0.129920822977795,0,0,0.120195449519969,0,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0,0.375364950902364,0.73260649706906,0.214368379079066,0,3.95326289831947,1.38097570952153,4.01026859407578,1.20297227640581,4.11049511862385,0.755393897389701,2.02506750069542,1.35096360967266,2.26571204492102,1.55328093525546,0.830298780673413,1.19707462020309,1.02440163452481,1.70174701947806,1.46729213839588,1.2869045591501,2.00022055021454,1.23621034343337,2.56735367673452,2.52697211763797,1.52087579934144,0.754505365544305,1.40462261204824,1.28050304809739,1.89537047553524,0.952587382566147,1.73826488917283,1.73618298417335,1.64834360321323,1.76638704161277,2.05721551431249,1.77475806159337,1.1921809497366,1.30811774969096,1.50575008664529,1.18460451048347,1.82927972872773,1.05227884575137,1.49384525230448,2.24456908663095,1.06771516311757,0.985044823755635,0.818462086339379,1.23949472948773,2.12197272079256,4.49659040288303,2.33931608445408,1.50409737833809,1.91288332068843,0.661774257358546,1.62307484934295 | |||
|short_description=p2@Gdpd2 | |||
}} |
Revision as of 11:05, 6 August 2015
Short description: | p2@Gdpd2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gdpd2_5end |
Coexpression cluster: | MCL_coexpression_mm9:310 |
Association with transcript: | 38bp_to_ENSMUST00000019503_5end |
EntrezGene: | 71584 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.98e-22 | 43 |
ectodermal cell | 3.16e-21 | 44 |
neurectodermal cell | 3.16e-21 | 44 |
neuron | 1.27e-16 | 33 |
neuronal stem cell | 1.27e-16 | 33 |
neuroblast | 1.27e-16 | 33 |
electrically signaling cell | 1.27e-16 | 33 |
electrically responsive cell | 3.96e-16 | 39 |
electrically active cell | 3.96e-16 | 39 |
CNS neuron (sensu Vertebrata) | 3.13e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.13e-13 | 23 |
embryonic cell | 1.83e-11 | 70 |
oligodendrocyte precursor cell | 1.20e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.47e-30 | 73 |
nervous system | 6.71e-30 | 75 |
regional part of nervous system | 2.26e-20 | 54 |
ectoderm-derived structure | 9.57e-20 | 95 |
ectoderm | 9.57e-20 | 95 |
presumptive ectoderm | 9.57e-20 | 95 |
neural tube | 5.26e-19 | 52 |
neural rod | 5.26e-19 | 52 |
future spinal cord | 5.26e-19 | 52 |
neural keel | 5.26e-19 | 52 |
neurectoderm | 7.91e-17 | 64 |
neural plate | 7.91e-17 | 64 |
presumptive neural plate | 7.91e-17 | 64 |
gray matter | 7.59e-15 | 34 |
regional part of brain | 1.41e-14 | 46 |
brain | 5.89e-14 | 47 |
future brain | 5.89e-14 | 47 |
anterior neural tube | 1.55e-12 | 40 |
ecto-epithelium | 1.73e-12 | 73 |
regional part of forebrain | 5.42e-12 | 39 |
forebrain | 5.42e-12 | 39 |
future forebrain | 5.42e-12 | 39 |
brain grey matter | 4.26e-11 | 29 |
regional part of telencephalon | 4.26e-11 | 29 |
telencephalon | 4.26e-11 | 29 |
pre-chordal neural plate | 1.96e-09 | 49 |
posterior neural tube | 1.47e-07 | 12 |
chordal neural plate | 1.47e-07 | 12 |
structure with developmental contribution from neural crest | 5.93e-07 | 92 |