FFCP PHASE1:Mm9::chr14:24823429..24823480,-: Difference between revisions
From FANTOM5_SSTAR
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|DHSsupport=NA | |DHSsupport=NA | ||
|DPIdataset=NA | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene=16531 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1130 | |MCL_coexpression_id=1130 | ||
|TSSclassifier=NA | |TSSclassifier=NA | ||
|UniProt= | |UniProt=Q08460,C3VLD3 | ||
|association_with_transcript=-2bp_to_NM_001253358,NM_001253359,NM_001253360,NM_001253361,NM_001253362,NM_001253363,NM_001253364,NM_001253365,NM_001253366,NM_001253367,NM_001253368,NM_001253369,NM_001253370,NM_001253371,NM_001253372,NM_001253373,NM_001253374,NM_001253375,NM_001253376, | |association_with_transcript=-2bp_to_NM_001253358,NM_001253359,NM_001253360,NM_001253361,NM_001253362,NM_001253363,NM_001253364,NM_001253365,NM_001253366,NM_001253367,NM_001253368,NM_001253369,NM_001253370,NM_001253371,NM_001253372,NM_001253373,NM_001253374,NM_001253375,NM_001253376, | ||
|cluster_id=chr14:24823429..24823480,- | |cluster_id=chr14:24823429..24823480,- | ||
Latest revision as of 19:33, 25 September 2015
| Short description: | p1@Kcnma1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Kcnma1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:1130 |
| Association with transcript: | -2bp_to_NM_001253358, NM_001253359, NM_001253360, NM_001253361, NM_001253362, NM_001253363, NM_001253364, NM_001253365, NM_001253366, NM_001253367, NM_001253368, NM_001253369, NM_001253370, NM_001253371, NM_001253372, NM_001253373, NM_001253374, NM_001253375, NM_001253376 |
| EntrezGene: | Kcnma1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
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CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| regional part of nervous system | 8.73e-14 | 54 |
| neurectoderm | 1.24e-12 | 64 |
| neural plate | 1.24e-12 | 64 |
| presumptive neural plate | 1.24e-12 | 64 |
| neural tube | 1.26e-12 | 52 |
| neural rod | 1.26e-12 | 52 |
| future spinal cord | 1.26e-12 | 52 |
| neural keel | 1.26e-12 | 52 |
| central nervous system | 4.34e-12 | 73 |
| nervous system | 3.57e-11 | 75 |
| brain | 8.52e-11 | 47 |
| future brain | 8.52e-11 | 47 |
| regional part of brain | 3.17e-10 | 46 |
| ecto-epithelium | 4.12e-10 | 73 |
| ectoderm-derived structure | 4.26e-10 | 95 |
| ectoderm | 4.26e-10 | 95 |
| presumptive ectoderm | 4.26e-10 | 95 |
| gray matter | 6.04e-10 | 34 |
| anterior neural tube | 2.77e-09 | 40 |
| pre-chordal neural plate | 3.47e-09 | 49 |
| occipital lobe | 6.42e-09 | 10 |
| visual cortex | 6.42e-09 | 10 |
| neocortex | 6.42e-09 | 10 |
| regional part of forebrain | 9.17e-09 | 39 |
| forebrain | 9.17e-09 | 39 |
| future forebrain | 9.17e-09 | 39 |
| brain grey matter | 4.60e-08 | 29 |
| regional part of telencephalon | 4.60e-08 | 29 |
| telencephalon | 4.60e-08 | 29 |
| structure with developmental contribution from neural crest | 1.12e-07 | 92 |
