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MCL coexpression mm9:1914

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:79379657..79379690,-p1@C030046I01Rik
Mm9::chr1:154613670..154613681,+p3@Arpc5
Mm9::chr3:143865543..143865579,-p7@Lmo4
Mm9::chr6:99642356..99642371,+p3@Gpr27


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.59e-1123
neuroblast (sensu Vertebrata)1.59e-1123
neuron9.48e-0833
neuronal stem cell9.48e-0833
neuroblast9.48e-0833
electrically signaling cell9.48e-0833
ectodermal cell1.43e-0744
neurectodermal cell1.43e-0744
neural cell3.67e-0743
electrically responsive cell5.66e-0739
electrically active cell5.66e-0739

Uber Anatomy
Ontology termp-valuen
regional part of nervous system4.37e-2254
ecto-epithelium6.70e-2273
neurectoderm5.42e-2164
neural plate5.42e-2164
presumptive neural plate5.42e-2164
ectoderm-derived structure6.50e-2195
ectoderm6.50e-2195
presumptive ectoderm6.50e-2195
neural tube6.51e-2152
neural rod6.51e-2152
future spinal cord6.51e-2152
neural keel6.51e-2152
central nervous system1.06e-2073
nervous system8.00e-2075
brain1.68e-1847
future brain1.68e-1847
gray matter4.39e-1834
regional part of brain6.20e-1846
pre-chordal neural plate8.39e-1849
anterior neural tube9.33e-1840
regional part of forebrain2.16e-1739
forebrain2.16e-1739
future forebrain2.16e-1739
brain grey matter2.51e-1529
regional part of telencephalon2.51e-1529
telencephalon2.51e-1529
structure with developmental contribution from neural crest1.48e-1392
cerebral cortex1.24e-1121
cerebral hemisphere1.24e-1121
pallium1.24e-1121
regional part of cerebral cortex1.29e-0917
occipital lobe1.51e-0710
visual cortex1.51e-0710
neocortex1.51e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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