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MCL coexpression mm9:1169

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Phase1 CAGE Peaks

 Short description
Mm9::chr18:78402606..78402617,-p7@Slc14a2
Mm9::chr18:78402628..78402656,-p4@Slc14a2
Mm9::chr18:78402660..78402716,-p2@Slc14a2
Mm9::chr2:25160647..25160666,-p3@Grin1
Mm9::chr2:4073634..4073656,+p32@Frmd4a
Mm9::chr9:58050108..58050129,-p17@Islr2
Mm9::chr9:58050554..58050579,-p15@Islr2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0042887amide transporter activity0.00443738356052032
GO:0015204urea transmembrane transporter activity0.00443738356052032
GO:0015840urea transport0.00443738356052032
GO:0042886amide transport0.00443738356052032
GO:0051219phosphoprotein binding0.023060490470473



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
neurectoderm5.90e-1764
neural plate5.90e-1764
presumptive neural plate5.90e-1764
pre-chordal neural plate6.20e-1649
neural tube1.50e-1452
neural rod1.50e-1452
future spinal cord1.50e-1452
neural keel1.50e-1452
regional part of nervous system1.42e-1354
gray matter2.06e-1334
ecto-epithelium2.50e-1373
regional part of forebrain9.97e-1339
forebrain9.97e-1339
future forebrain9.97e-1339
anterior neural tube3.33e-1240
central nervous system9.68e-1273
ectoderm-derived structure2.32e-1195
ectoderm2.32e-1195
presumptive ectoderm2.32e-1195
nervous system4.00e-1175
regional part of brain2.41e-1046
brain5.95e-1047
future brain5.95e-1047
brain grey matter1.94e-0929
regional part of telencephalon1.94e-0929
telencephalon1.94e-0929
structure with developmental contribution from neural crest1.00e-0892
basal ganglion8.81e-078
nuclear complex of neuraxis8.81e-078
aggregate regional part of brain8.81e-078
collection of basal ganglia8.81e-078
cerebral subcortex8.81e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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