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MCL coexpression mm9:709

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:43561465..43561517,-p1@Ttc1
Mm9::chr16:56717559..56717570,-p3@Tfg
Mm9::chr18:38456480..38456491,+p5@Rnf14
Mm9::chr5:125342499..125342518,-p4@Ccdc92
Mm9::chr5:125342530..125342574,-p2@Ccdc92
Mm9::chr5:125342586..125342597,-p8@Ccdc92
Mm9::chr5:125342836..125342853,-p6@Ccdc92
Mm9::chr5:125342855..125342871,-p7@Ccdc92
Mm9::chr9:106367618..106367633,-p@chr9:106367618..106367633
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Mm9::chr9:4309719..4309748,+p2@Kbtbd3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)7.29e-0923
neuroblast (sensu Vertebrata)7.29e-0923
ectodermal cell5.79e-0844
neurectodermal cell5.79e-0844
neural cell1.13e-0743

Uber Anatomy
Ontology termp-valuen
ectoderm-derived structure5.03e-2695
ectoderm5.03e-2695
presumptive ectoderm5.03e-2695
neurectoderm1.94e-2564
neural plate1.94e-2564
presumptive neural plate1.94e-2564
ecto-epithelium8.81e-2573
regional part of nervous system2.52e-2454
central nervous system7.98e-2473
nervous system1.08e-2375
neural tube6.57e-2352
neural rod6.57e-2352
future spinal cord6.57e-2352
neural keel6.57e-2352
pre-chordal neural plate2.55e-2049
brain6.03e-2047
future brain6.03e-2047
regional part of brain2.71e-1946
structure with developmental contribution from neural crest5.52e-1992
anterior neural tube1.27e-1640
regional part of forebrain5.81e-1639
forebrain5.81e-1639
future forebrain5.81e-1639
gray matter1.95e-1434
brain grey matter8.27e-1229
regional part of telencephalon8.27e-1229
telencephalon8.27e-1229
cerebral cortex1.81e-0821
cerebral hemisphere1.81e-0821
pallium1.81e-0821
regional part of cerebral cortex1.92e-0717
posterior neural tube5.81e-0712
chordal neural plate5.81e-0712


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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