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MCL coexpression mm9:2283

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Phase1 CAGE Peaks

 Short description
Mm9::chr1:134439434..134439455,-p1@Cntn2
Mm9::chr1:134439459..134439483,-p2@Cntn2
Mm9::chr1:134439511..134439531,-p3@Cntn2
Mm9::chr2:124436014..124436021,+p6@Sema6d


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0007399nervous system development0.0400587109094456
GO:0001764neuron migration0.0476855047073219
GO:0030424axon0.0476855047073219
GO:0048731system development0.0476855047073219
GO:0048869cellular developmental process0.0476855047073219
GO:0030154cell differentiation0.0476855047073219
GO:0048856anatomical structure development0.0476855047073219
GO:0043005neuron projection0.0476855047073219
GO:0048503GPI anchor binding0.0476855047073219
GO:0007275multicellular organismal development0.0476855047073219



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
nervous system6.21e-2775
ectoderm-derived structure6.58e-2795
ectoderm6.58e-2795
presumptive ectoderm6.58e-2795
central nervous system1.15e-2673
neurectoderm1.68e-2464
neural plate1.68e-2464
presumptive neural plate1.68e-2464
regional part of nervous system2.59e-2454
structure with developmental contribution from neural crest1.15e-2392
ecto-epithelium2.21e-2373
neural tube5.46e-2352
neural rod5.46e-2352
future spinal cord5.46e-2352
neural keel5.46e-2352
brain6.31e-2047
future brain6.31e-2047
pre-chordal neural plate1.30e-1949
regional part of brain2.00e-1946
gray matter1.20e-1734
anterior neural tube1.33e-1740
regional part of forebrain5.54e-1739
forebrain5.54e-1739
future forebrain5.54e-1739
brain grey matter5.95e-1529
regional part of telencephalon5.95e-1529
telencephalon5.95e-1529
cerebral cortex1.91e-1021
cerebral hemisphere1.91e-1021
pallium1.91e-1021
regional part of cerebral cortex6.75e-0817
tube1.41e-07114
anatomical conduit6.23e-07122


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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