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Coexpression cluster:C87

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Full id: C87_retinoblastoma_left_nonsmall_heart_small_diaphragm_bronchogenic



Phase1 CAGE Peaks

Hg19::chr10:15074190..15074195,+p6@OLAH
Hg19::chr10:69991865..69991870,-p1@ATOH7
Hg19::chr10:83204209..83204218,+p@chr10:83204209..83204218
+
Hg19::chr11:103301940..103301943,-p@chr11:103301940..103301943
-
Hg19::chr11:103317524..103317527,-p@chr11:103317524..103317527
-
Hg19::chr11:106336711..106336713,+p@chr11:106336711..106336713
+
Hg19::chr11:114798961..114798964,-p@chr11:114798961..114798964
-
Hg19::chr12:13248562..13248595,-p4@GSG1
Hg19::chr12:41078936..41078944,-p@chr12:41078936..41078944
-
Hg19::chr12:41079029..41079035,-p@chr12:41079029..41079035
-
Hg19::chr12:65980591..65980599,-p@chr12:65980591..65980599
-
Hg19::chr12:73368930..73368946,-p@chr12:73368930..73368946
-
Hg19::chr13:25755464..25755475,+p3@ENST00000457628
Hg19::chr13:25755497..25755513,+p1@ENST00000457628
Hg19::chr13:71380974..71381004,+p@chr13:71380974..71381004
+
Hg19::chr14:57197262..57197273,-p1@ENST00000556696
Hg19::chr14:57272369..57272391,-p2@OTX2
Hg19::chr14:60636500..60636512,-p8@DHRS7
Hg19::chr14:60636590..60636597,-p11@DHRS7
Hg19::chr14:60636598..60636610,-p6@DHRS7
Hg19::chr14:91278210..91278220,+p@chr14:91278210..91278220
+
Hg19::chr15:46559400..46559404,+p@chr15:46559400..46559404
+
Hg19::chr15:86003933..86003941,+p@chr15:86003933..86003941
+
Hg19::chr16:30042116..30042186,-p2@FAM57B
Hg19::chr17:26301257..26301266,-p1@BC034720
Hg19::chr17:56769371..56769381,-p5@TEX14
Hg19::chr17:70940047..70940062,-p@chr17:70940047..70940062
-
Hg19::chr18:39738379..39738384,+p@chr18:39738379..39738384
+
Hg19::chr18:39738733..39738779,+p@chr18:39738733..39738779
+
Hg19::chr18:39739137..39739138,+p@chr18:39739137..39739138
+
Hg19::chr18:39739175..39739186,+p@chr18:39739175..39739186
+
Hg19::chr18:39739223..39739238,+p@chr18:39739223..39739238
+
Hg19::chr18:39749184..39749185,+p@chr18:39749184..39749185
+
Hg19::chr18:39766545..39766555,+p3@uc002las.1
p3@uc002lat.2
p3@uc002lau.2
Hg19::chr18:39766598..39766611,+p2@uc002las.1
p2@uc002lat.2
p2@uc002lau.2
Hg19::chr18:39766626..39766644,+p1@uc002las.1
p1@uc002lat.2
p1@uc002lau.2
Hg19::chr18:39772023..39772030,+p@chr18:39772023..39772030
+
Hg19::chr18:39773600..39773605,+p@chr18:39773600..39773605
+
Hg19::chr18:39775826..39775830,+p@chr18:39775826..39775830
+
Hg19::chr18:39777954..39777964,+p@chr18:39777954..39777964
+
Hg19::chr18:39780587..39780589,+p@chr18:39780587..39780589
+
Hg19::chr18:39780625..39780630,+p@chr18:39780625..39780630
+
Hg19::chr18:39804201..39804205,+p@chr18:39804201..39804205
+
Hg19::chr18:39810777..39810778,+p@chr18:39810777..39810778
+
Hg19::chr18:39813889..39813893,+p@chr18:39813889..39813893
+
Hg19::chr18:39814220..39814225,+p@chr18:39814220..39814225
+
Hg19::chr18:39820439..39820461,+p@chr18:39820439..39820461
+
Hg19::chr18:39821895..39821899,+p@chr18:39821895..39821899
+
Hg19::chr18:39821929..39821932,+p@chr18:39821929..39821932
+
Hg19::chr18:39829747..39829750,+p@chr18:39829747..39829750
+
Hg19::chr18:39842923..39842928,+p@chr18:39842923..39842928
+
Hg19::chr18:39854023..39854028,+p@chr18:39854023..39854028
+
Hg19::chr18:39859562..39859566,+p@chr18:39859562..39859566
+
Hg19::chr18:39865511..39865514,+p@chr18:39865511..39865514
+
Hg19::chr18:39867441..39867445,+p@chr18:39867441..39867445
+
Hg19::chr18:39868070..39868079,+p@chr18:39868070..39868079
+
Hg19::chr18:39868291..39868330,+p@chr18:39868291..39868330
+
Hg19::chr18:39868618..39868622,+p@chr18:39868618..39868622
+
Hg19::chr18:39871319..39871320,+p@chr18:39871319..39871320
+
Hg19::chr18:39874020..39874024,+p@chr18:39874020..39874024
+
Hg19::chr18:39875774..39875777,+p@chr18:39875774..39875777
+
Hg19::chr18:39881202..39881211,+p@chr18:39881202..39881211
+
Hg19::chr18:39881292..39881297,+p@chr18:39881292..39881297
+
Hg19::chr18:39891688..39891725,+p@chr18:39891688..39891725
+
Hg19::chr18:39893995..39893996,+p@chr18:39893995..39893996
+
Hg19::chr18:39894144..39894153,+p@chr18:39894144..39894153
+
Hg19::chr18:39896465..39896470,+p@chr18:39896465..39896470
+
Hg19::chr18:39897463..39897468,+p@chr18:39897463..39897468
+
Hg19::chr18:39897476..39897487,+p@chr18:39897476..39897487
+
Hg19::chr18:39897509..39897518,+p@chr18:39897509..39897518
+
Hg19::chr18:39897864..39897888,+p@chr18:39897864..39897888
+
Hg19::chr18:39898010..39898025,+p@chr18:39898010..39898025
+
Hg19::chr18:39898508..39898535,+p@chr18:39898508..39898535
+
Hg19::chr18:39913256..39913260,+p@chr18:39913256..39913260
+
Hg19::chr18:39914963..39914970,+p@chr18:39914963..39914970
+
Hg19::chr18:39920431..39920435,+p@chr18:39920431..39920435
+
Hg19::chr18:39930705..39930710,+p@chr18:39930705..39930710
+
Hg19::chr18:39937629..39937636,+p@chr18:39937629..39937636
+
Hg19::chr18:39972061..39972066,+p@chr18:39972061..39972066
+
Hg19::chr18:39972522..39972523,+p@chr18:39972522..39972523
+
Hg19::chr18:40009800..40009804,+p@chr18:40009800..40009804
+
Hg19::chr18:40036211..40036214,+p@chr18:40036211..40036214
+
Hg19::chr18:40042666..40042675,+p@chr18:40042666..40042675
+
Hg19::chr18:40047499..40047513,+p@chr18:40047499..40047513
+
Hg19::chr18:40053270..40053272,+p@chr18:40053270..40053272
+
Hg19::chr18:40059734..40059738,+p@chr18:40059734..40059738
+
Hg19::chr18:40078407..40078413,+p@chr18:40078407..40078413
+
Hg19::chr18:40082462..40082503,+p@chr18:40082462..40082503
+
Hg19::chr18:40126571..40126572,+p@chr18:40126571..40126572
+
Hg19::chr18:40190226..40190230,+p@chr18:40190226..40190230
+
Hg19::chr18:40200823..40200829,+p@chr18:40200823..40200829
+
Hg19::chr18:40215689..40215694,+p@chr18:40215689..40215694
+
Hg19::chr18:40223091..40223095,+p@chr18:40223091..40223095
+
Hg19::chr18:40247450..40247453,+p@chr18:40247450..40247453
+
Hg19::chr18:40264537..40264544,+p@chr18:40264537..40264544
+
Hg19::chr18:40302030..40302033,+p@chr18:40302030..40302033
+
Hg19::chr18:43662040..43662046,-p@chr18:43662040..43662046
-
Hg19::chr18:43665270..43665273,-p@chr18:43665270..43665273
-
Hg19::chr18:43673335..43673337,-p@chr18:43673335..43673337
-
Hg19::chr18:43678241..43678268,-p1@ATP5A1
Hg19::chr18:43681843..43681845,-p@chr18:43681843..43681845
-
Hg19::chr18:43683574..43683577,-p@chr18:43683574..43683577
-
Hg19::chr18:43684186..43684198,-p5@ATP5A1
Hg19::chr18:43684202..43684207,-p16@ATP5A1
Hg19::chr18:43684211..43684228,-p12@ATP5A1
Hg19::chr18:43684230..43684257,-p6@ATP5A1
Hg19::chr18:43684310..43684373,+p1@HAUS1
Hg19::chr18:43688255..43688259,+p@chr18:43688255..43688259
+
Hg19::chr18:43690139..43690142,+p@chr18:43690139..43690142
+
Hg19::chr18:43753974..43754019,+p2@C18orf25
Hg19::chr18:43754021..43754071,+p1@C18orf25
Hg19::chr18:66861303..66861304,-p@chr18:66861303..66861304
-
Hg19::chr18:66884630..66884649,-p@chr18:66884630..66884649
-
Hg19::chr18:73968454..73968457,+p@chr18:73968454..73968457
+
Hg19::chr18:74073027..74073036,-p14@ZNF516
Hg19::chr18:74101235..74101236,-p1@AK095033
Hg19::chr18:74106879..74106890,-p@chr18:74106879..74106890
-
Hg19::chr18:74107127..74107144,-p@chr18:74107127..74107144
-
Hg19::chr18:74192112..74192116,-p@chr18:74192112..74192116
-
Hg19::chr18:74201538..74201543,-p@chr18:74201538..74201543
-
Hg19::chr18:74204854..74204881,-p@chr18:74204854..74204881
-
Hg19::chr18:74204885..74204892,-p@chr18:74204885..74204892
-
Hg19::chr18:74204894..74204938,-p@chr18:74204894..74204938
-
Hg19::chr18:74207247..74207249,-p12@ZNF516
Hg19::chr18:74370674..74370676,-p@chr18:74370674..74370676
-
Hg19::chr18:74413056..74413061,-p1@BC070490
Hg19::chr19:33615988..33616009,+p@chr19:33615988..33616009
+
Hg19::chr19:36346734..36346751,+p2@KIRREL2
Hg19::chr19:3772263..3772274,-p2@RAX2
Hg19::chr1:166776796..166776800,-p@chr1:166776796..166776800
-
Hg19::chr1:167165019..167165028,-p1@ENST00000426709
p1@ENST00000446687
Hg19::chr1:167165038..167165047,-p2@ENST00000446687
Hg19::chr1:167189406..167189444,+p@chr1:167189406..167189444
+
Hg19::chr1:187599792..187599837,-p@chr1:187599792..187599837
-
Hg19::chr1:26759295..26759302,+p3@DHDDS
Hg19::chr1:53608270..53608288,-p3@SLC1A7
Hg19::chr1:53608289..53608315,-p1@SLC1A7
Hg19::chr1:75602129..75602140,+p6@LHX8
Hg19::chr20:34214686..34214696,-p24@CPNE1
Hg19::chr21:16031122..16031152,-p2@LOC388813
Hg19::chr21:16031159..16031171,-p3@LOC388813
Hg19::chr21:46546516..46546524,+p@chr21:46546516..46546524
+
Hg19::chr21:46546528..46546534,+p@chr21:46546528..46546534
+
Hg19::chr2:115822146..115822156,+p32@DPP10
Hg19::chr2:115822233..115822244,+p35@DPP10
Hg19::chr2:115918717..115918732,-p1@ENST00000448663
Hg19::chr2:116000264..116000269,+p@chr2:116000264..116000269
+
Hg19::chr2:116035053..116035058,+p@chr2:116035053..116035058
+
Hg19::chr2:116059064..116059067,+p@chr2:116059064..116059067
+
Hg19::chr2:116079106..116079109,+p@chr2:116079106..116079109
+
Hg19::chr2:116091821..116091826,+p@chr2:116091821..116091826
+
Hg19::chr2:16084302..16084307,+p@chr2:16084302..16084307
+
Hg19::chr2:16123704..16123712,-p@chr2:16123704..16123712
-
Hg19::chr2:165170843..165170852,-p@chr2:165170843..165170852
-
Hg19::chr2:165170873..165170919,-p@chr2:165170873..165170919
-
Hg19::chr2:176060974..176060979,+p@chr2:176060974..176060979
+
Hg19::chr2:176940257..176940288,-p@chr2:176940257..176940288
-
Hg19::chr2:179770078..179770081,-p@chr2:179770078..179770081
-
Hg19::chr2:179770087..179770101,-p@chr2:179770087..179770101
-
Hg19::chr2:179770109..179770114,-p@chr2:179770109..179770114
-
Hg19::chr2:179770118..179770134,-p@chr2:179770118..179770134
-
Hg19::chr2:179770135..179770161,-p@chr2:179770135..179770161
-
Hg19::chr2:182546955..182546958,+p@chr2:182546955..182546958
+
Hg19::chr2:202967585..202967618,+p@chr2:202967585..202967618
+
Hg19::chr2:20551987..20552001,-p8@PUM2
Hg19::chr2:48468154..48468166,-p1@ENST00000447571
Hg19::chr3:61635177..61635181,-p@chr3:61635177..61635181
-
Hg19::chr3:62717478..62717479,-p@chr3:62717478..62717479
-
Hg19::chr3:6553105..6553115,+p@chr3:6553105..6553115
+
Hg19::chr3:6693211..6693215,+p@chr3:6693211..6693215
+
Hg19::chr4:1602645..1602695,-p@chr4:1602645..1602695
-
Hg19::chr4:18196043..18196063,+p@chr4:18196043..18196063
+
Hg19::chr4:39344493..39344497,-p@chr4:39344493..39344497
-
Hg19::chr4:80748640..80748660,+p1@GDEP
Hg19::chr5:117873881..117873899,-p@chr5:117873881..117873899
-
Hg19::chr5:155105455..155105465,+p@chr5:155105455..155105465
+
Hg19::chr5:155295391..155295395,+p@chr5:155295391..155295395
+
Hg19::chr5:155753745..155753782,+p6@SGCD
Hg19::chr5:178422299..178422326,-p1@GRM6
Hg19::chr5:178422337..178422351,-p2@GRM6
Hg19::chr5:82502040..82502052,+p5@XRCC4
Hg19::chr5:82502075..82502091,+p7@XRCC4
Hg19::chr5:82502101..82502118,+p4@XRCC4
Hg19::chr5:82502142..82502143,+p9@XRCC4
Hg19::chr6:11029286..11029291,-p@chr6:11029286..11029291
-
Hg19::chr6:138819877..138819886,-p@chr6:138819877..138819886
-
Hg19::chr6:36644267..36644294,+p4@CDKN1A
Hg19::chr6:36644295..36644305,+p13@CDKN1A
Hg19::chr6:40308163..40308170,+p3@ENST00000448559
Hg19::chr6:40308174..40308191,+p1@ENST00000448559
Hg19::chr6:40308206..40308214,+p2@ENST00000448559
Hg19::chr6:40309612..40309617,-p@chr6:40309612..40309617
-
Hg19::chr6:66376847..66376851,-p@chr6:66376847..66376851
-
Hg19::chr6:73330014..73330020,+p@chr6:73330014..73330020
+
Hg19::chr7:105241301..105241307,-p4@EFCAB10
Hg19::chr7:105241312..105241326,-p3@EFCAB10
Hg19::chr7:105779479..105779483,+p@chr7:105779479..105779483
+
Hg19::chr7:121151242..121151251,-p@chr7:121151242..121151251
-
Hg19::chr7:142640966..142640992,-p2@KEL
Hg19::chr7:142641040..142641043,-p8@KEL
Hg19::chr7:148287852..148287863,+p1@C7orf33
Hg19::chr7:69788211..69788223,+p@chr7:69788211..69788223
+
Hg19::chr7:69819605..69819617,+p@chr7:69819605..69819617
+
Hg19::chr9:137599291..137599303,+p@chr9:137599291..137599303
+
Hg19::chr9:137599308..137599312,+p@chr9:137599308..137599312
+
Hg19::chr9:139111090..139111095,-p7@QSOX2
Hg19::chr9:14437789..14437828,-p@chr9:14437789..14437828
-
Hg19::chr9:382452..382464,+p15@DOCK8
Hg19::chr9:382473..382483,+p19@DOCK8
Hg19::chrX:96762137..96762139,-p@chrX:96762137..96762139
-
Hg19::chrX:96781458..96781461,-p@chrX:96781458..96781461
-
Hg19::chrX:96783831..96783832,-p@chrX:96783831..96783832
-
Hg19::chrX:96808663..96808667,-p@chrX:96808663..96808667
-
Hg19::chrX:96819487..96819507,-p3@DIAPH2-AS1
Hg19::chrX:96819517..96819540,-p1@DIAPH2-AS1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0009314response to radiation0.0205038717876667
GO:0009628response to abiotic stimulus0.0439641124998119



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
regional part of nervous system5.80e-2594
nervous system5.80e-2594
central nervous system1.58e-2182
neural tube8.60e-2057
neural rod8.60e-2057
future spinal cord8.60e-2057
neural keel8.60e-2057
adult organism2.23e-19115
neurectoderm3.53e-1890
regional part of forebrain5.34e-1841
forebrain5.34e-1841
future forebrain5.34e-1841
anterior neural tube4.79e-1742
neural plate7.14e-1786
presumptive neural plate7.14e-1786
regional part of brain3.48e-1659
brain1.29e-1569
future brain1.29e-1569
gray matter1.79e-1534
brain grey matter1.79e-1534
telencephalon7.36e-1534
cerebral hemisphere1.09e-1432
regional part of telencephalon1.96e-1433
pre-chordal neural plate2.31e-1361
ectoderm5.06e-13173
presumptive ectoderm5.06e-13173
cerebral cortex4.87e-1225
pallium4.87e-1225
ectoderm-derived structure5.38e-12169
regional part of cerebral cortex1.36e-1122
neocortex1.41e-1020
anterior region of body1.04e-08129
craniocervical region1.04e-08129
head2.80e-08123
Disease
Ontology termp-valuen
hematologic cancer1.21e-0951
immune system cancer1.21e-0951
leukemia3.46e-0839


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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