FF:11423-118G1: Difference between revisions

Latest revision as of 18:00, 4 June 2020

Name:	Melanocyte - light, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12033
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	infant
sex	male
age	neonatal
cell type	melanocyte
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1259
catalog number	CA104-R10n
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005433

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12033		CAGE		DRX008340		DRR009212

Accession ID Hg19

Library id		BAM		CTSS
CNhs12033		DRZ000637		DRZ002022

Accession ID Hg38

Library id		BAM		CTSS
CNhs12033		DRZ011987		DRZ013372

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005433

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10009.GTTTCG		sRNA-Seq		DRX037144		DRR041510

Accession ID Hg19

Library id		BAM		CTSS
SRhi10009.GTTTCG		DRZ007152

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0608
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.278
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.239
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0397
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.932
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0.433
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	1.618
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.255
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.787
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0414
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.368
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0.433
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0.788
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12033

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.444
MA0003.1	MA0003.1	0.243
MA0004.1	MA0004.1	0.0105
MA0006.1	MA0006.1	0.506
MA0007.1	MA0007.1	0.028
MA0009.1	MA0009.1	0.669
MA0014.1	MA0014.1	0.937
MA0017.1	MA0017.1	0.422
MA0018.2	MA0018.2	0.0589
MA0019.1	MA0019.1	0.287
MA0024.1	MA0024.1	0.529
MA0025.1	MA0025.1	0.096
MA0027.1	MA0027.1	0.86
MA0028.1	MA0028.1	7.15472e-5
MA0029.1	MA0029.1	0.98
MA0030.1	MA0030.1	0.611
MA0031.1	MA0031.1	0.311
MA0035.2	MA0035.2	0.66
MA0038.1	MA0038.1	0.182
MA0039.2	MA0039.2	0.153
MA0040.1	MA0040.1	0.577
MA0041.1	MA0041.1	0.337
MA0042.1	MA0042.1	0.78
MA0043.1	MA0043.1	6.01153e-4
MA0046.1	MA0046.1	0.773
MA0047.2	MA0047.2	0.935
MA0048.1	MA0048.1	0.985
MA0050.1	MA0050.1	3.67081e-5
MA0051.1	MA0051.1	0.00169
MA0052.1	MA0052.1	0.00495
MA0055.1	MA0055.1	0.386
MA0057.1	MA0057.1	0.64
MA0058.1	MA0058.1	6.01876e-4
MA0059.1	MA0059.1	0.0038
MA0060.1	MA0060.1	1.72549e-4
MA0061.1	MA0061.1	0.265
MA0062.2	MA0062.2	1.03216e-8
MA0065.2	MA0065.2	0.0197
MA0066.1	MA0066.1	0.623
MA0067.1	MA0067.1	0.367
MA0068.1	MA0068.1	0.34
MA0069.1	MA0069.1	0.818
MA0070.1	MA0070.1	0.0111
MA0071.1	MA0071.1	0.479
MA0072.1	MA0072.1	0.428
MA0073.1	MA0073.1	0.783
MA0074.1	MA0074.1	0.126
MA0076.1	MA0076.1	7.16165e-7
MA0077.1	MA0077.1	0.176
MA0078.1	MA0078.1	0.463
MA0079.2	MA0079.2	0.372
MA0080.2	MA0080.2	5.67402e-4
MA0081.1	MA0081.1	0.0221
MA0083.1	MA0083.1	0.0209
MA0084.1	MA0084.1	0.769
MA0087.1	MA0087.1	0.616
MA0088.1	MA0088.1	0.839
MA0090.1	MA0090.1	0.278
MA0091.1	MA0091.1	0.00326
MA0092.1	MA0092.1	0.8
MA0093.1	MA0093.1	0.00365
MA0099.2	MA0099.2	0.567
MA0100.1	MA0100.1	0.158
MA0101.1	MA0101.1	0.134
MA0102.2	MA0102.2	0.166
MA0103.1	MA0103.1	0.936
MA0104.2	MA0104.2	0.272
MA0105.1	MA0105.1	0.392
MA0106.1	MA0106.1	0.159
MA0107.1	MA0107.1	0.204
MA0108.2	MA0108.2	1.09905e-14
MA0111.1	MA0111.1	0.722
MA0112.2	MA0112.2	0.026
MA0113.1	MA0113.1	0.198
MA0114.1	MA0114.1	0.222
MA0115.1	MA0115.1	0.561
MA0116.1	MA0116.1	0.736
MA0117.1	MA0117.1	0.128
MA0119.1	MA0119.1	0.0176
MA0122.1	MA0122.1	0.326
MA0124.1	MA0124.1	0.404
MA0125.1	MA0125.1	0.225
MA0131.1	MA0131.1	0.169
MA0135.1	MA0135.1	0.00853
MA0136.1	MA0136.1	3.48973e-7
MA0137.2	MA0137.2	0.00465
MA0138.2	MA0138.2	0.18
MA0139.1	MA0139.1	0.938
MA0140.1	MA0140.1	0.433
MA0141.1	MA0141.1	0.0641
MA0142.1	MA0142.1	0.168
MA0143.1	MA0143.1	0.91
MA0144.1	MA0144.1	0.249
MA0145.1	MA0145.1	0.31
MA0146.1	MA0146.1	0.173
MA0147.1	MA0147.1	0.167
MA0148.1	MA0148.1	0.37
MA0149.1	MA0149.1	0.943
MA0150.1	MA0150.1	0.72
MA0152.1	MA0152.1	0.824
MA0153.1	MA0153.1	0.695
MA0154.1	MA0154.1	0.666
MA0155.1	MA0155.1	0.0274
MA0156.1	MA0156.1	2.56475e-5
MA0157.1	MA0157.1	0.343
MA0159.1	MA0159.1	0.65
MA0160.1	MA0160.1	0.394
MA0162.1	MA0162.1	0.197
MA0163.1	MA0163.1	0.904
MA0164.1	MA0164.1	0.882
MA0258.1	MA0258.1	0.0107
MA0259.1	MA0259.1	0.455

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12033

Novel motif	Logo	P-value
1	1	0.817
10	10	0.11
100	100	0.45
101	101	0.172
102	102	0.815
103	103	0.447
104	104	0.419
105	105	0.774
106	106	0.06
107	107	0.0518
108	108	0.362
109	109	0.776
11	11	0.359
110	110	0.248
111	111	0.538
112	112	0.625
113	113	0.472
114	114	0.49
115	115	0.274
116	116	0.219
117	117	0.602
118	118	0.885
119	119	0.7
12	12	0.305
120	120	0.694
121	121	0.637
122	122	0.748
123	123	0.422
124	124	0.901
125	125	0.921
126	126	0.965
127	127	0.415
128	128	0.0335
129	129	0.157
13	13	0.97
130	130	0.698
131	131	0.111
132	132	0.423
133	133	0.227
134	134	0.602
135	135	0.874
136	136	0.979
137	137	0.749
138	138	0.25
139	139	0.663
14	14	0.62
140	140	0.807
141	141	0.314
142	142	0.529
143	143	0.56
144	144	0.914
145	145	0.357
146	146	0.0133
147	147	0.136
148	148	0.155
149	149	0.414
15	15	0.763
150	150	0.182
151	151	0.695
152	152	0.0935
153	153	0.846
154	154	0.051
155	155	0.839
156	156	0.943
157	157	0.162
158	158	0.0634
159	159	0.402
16	16	0.299
160	160	0.244
161	161	0.903
162	162	0.0434
163	163	0.357
164	164	0.367
165	165	0.467
166	166	0.486
167	167	0.142
168	168	0.706
169	169	0.0988
17	17	0.177
18	18	0.0855
19	19	0.111
2	2	0.271
20	20	0.591
21	21	0.831
22	22	0.14
23	23	0.413
24	24	0.395
25	25	0.317
26	26	0.156
27	27	0.231
28	28	0.13
29	29	0.729
3	3	0.773
30	30	0.435
31	31	0.0915
32	32	0.124
33	33	0.816
34	34	0.269
35	35	0.71
36	36	0.323
37	37	0.573
38	38	0.707
39	39	0.454
4	4	0.524
40	40	0.159
41	41	0.817
42	42	0.293
43	43	0.45
44	44	0.777
45	45	0.333
46	46	0.373
47	47	0.684
48	48	0.946
49	49	0.51
5	5	0.769
50	50	0.541
51	51	0.439
52	52	0.266
53	53	0.366
54	54	0.675
55	55	0.078
56	56	0.932
57	57	0.181
58	58	0.252
59	59	0.0532
6	6	0.918
60	60	0.359
61	61	0.982
62	62	0.311
63	63	0.245
64	64	0.392
65	65	0.0321
66	66	0.287
67	67	0.616
68	68	0.819
69	69	0.383
7	7	0.667
70	70	0.356
71	71	0.722
72	72	0.617
73	73	0.0518
74	74	0.541
75	75	0.856
76	76	0.196
77	77	0.0602
78	78	0.174
79	79	0.72
8	8	0.0554
80	80	0.555
81	81	0.694
82	82	0.957
83	83	0.962
84	84	0.61
85	85	0.137
86	86	0.992
87	87	0.043
88	88	0.328
89	89	0.159
9	9	0.392
90	90	0.0944
91	91	0.808
92	92	0.462
93	93	0.509
94	94	0.994
95	95	0.585
96	96	0.713
97	97	0.424
98	98	0.41
99	99	0.0179

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12033

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000090 human light melanocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)
0002567 (light melanocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000090 (human light melanocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005433
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005433
+|accession_numbers=CAGE;DRX008340;DRR009212;DRZ000637;DRZ002022;DRZ011987;DRZ013372
+|accession_numbers_RNASeq=sRNA-Seq;DRX037144;DRR041510;DRZ007152
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000710,CL:0000255,CL:0002077,CL:0000148,CL:0002567
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr22:38380543..38380569,-!p1@SOX10!2.70!496.11!SOX10;;chr19:3574330..3574393,+!p2@HMG20B!2.07!116.33!HMG20B;;chr2:223163706..223163730,-!p1@PAX3!1.98!94.09!PAX3;;chr6:391743..391759,+!p1@IRF4!1.90!78.69!IRF4;;chr6:10415276..10415341,-!p2@TFAP2A!1.76!68.43!TFAP2A;;chr19:3574400..3574430,+!p6@HMG20B!1.73!53.03!HMG20B;;chr3:69985734..69985749,+!p2@MITF!1.72!51.32!MITF;;chr6:10412600..10412637,-!p1@TFAP2A!1.66!73.56!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.66!44.48!TFAP2A;;chr19:3574157..3574180,+!p4@HMG20B!1.66!44.48!HMG20B;;chr1:25256756..25256774,-!p1@RUNX3!1.64!78.69!RUNX3;;chr8:72756637..72756664,-!p3@MSC!1.55!39.35!MSC;;chr2:5832508..5832524,+!p1@SOX11!1.55!34.21!SOX11;;chr2:239148671..239148686,-!p1@HES6!1.42!90.67!HES6;;chr17:59477233..59477263,+!p1@TBX2!1.38!70.14!TBX2;;chr14:29235961..29236008,+!p1@FOXG1!1.37!22.24!FOXG1;;chr20:62680984..62680999,-!p1@SOX18!1.34!27.37!SOX18;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.33!20.53!HOXC5;;chr17:59477275..59477286,+!p3@TBX2!1.28!23.95!TBX2;;chr11:47279504..47279563,+!p1@NR1H3!1.23!35.93!NR1H3;;chr20:55204351..55204377,+!p1@TFAP2C!1.20!18.82!TFAP2C;;chr17:46688334..46688385,-!p1@HOXB7!1.18!20.53!HOXB7;;chr1:209979467..209979494,-!p1@IRF6!1.17!15.40!IRF6;;chr1:25256439..25256476,-!p3@RUNX3!1.17!13.69!RUNX3;;chr17:46806067..46806097,-!p1@HOXB13!1.17!13.69!HOXB13;;chr17:7493405..7493419,-!p1@SOX15!1.17!13.69!SOX15;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.69!IRX2;;chr5:321810..321877,+!p1@AHRR!1.16!42.77!AHRR;;chr6:10412392..10412409,-!p4@TFAP2A!1.11!13.69!TFAP2A;;chr5:3595961..3595975,+!p3@IRX1!1.11!11.98!IRX1;;chr6:10412576..10412599,-!p5@TFAP2A!1.11!11.98!TFAP2A;;chr7:31380292..31380351,-!p1@NEUROD6!1.11!11.98!NEUROD6;;chr17:46806035..46806059,-!p2@HOXB13!1.11!11.98!HOXB13;;chr11:34642612..34642646,+!p1@EHF!1.11!11.98!EHF;;chr12:54447637..54447659,+!p4@HOXC4!1.11!11.98!HOXC4;;chr9:102584262..102584276,+!p1@NR4A3!1.07!23.95!NR4A3;;chr2:239756671..239756732,+!p1@TWIST2!1.06!34.21!TWIST2;;chr15:42749722..42749739,-!p2@ZFP106!1.06!18.82!ZFP106;;chr8:72756267..72756296,-!p4@MSC!1.06!15.40!MSC;;chr6:10415263..10415274,-!p8@TFAP2A!1.05!10.26!TFAP2A;;chr8:72756380..72756427,-!p8@MSC!1.05!10.26!MSC;;chr2:119605214..119605230,-!p1@EN1!1.05!10.26!EN1;;chr1:63788229..63788250,+!p1@FOXD3!1.05!10.26!FOXD3;;chr1:6479968..6479986,-!p1@HES2!1.05!10.26!HES2;;chr16:67198683..67198698,+!p2@HSF4!1.05!10.26!HSF4;;chr8:72756063..72756125,-!p1@MSC!1.04!20.53!MSC;;chr7:19157248..19157268,-!p1@TWIST1!1.03!27.37!TWIST1;;chr11:65667884..65667895,-!p2@FOSL1!1.02!37.64!FOSL1;;chr8:22550982..22550999,-!p1@EGR3!1.00!25.66!EGR3;;chr12:54380404..54380433,+!p3@HOXC10!0.98!8.55!HOXC10;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.55!HOXD8;;chr17:8027418..8027432,-!p1@HES7!0.98!8.55!HES7;;chr20:50179368..50179392,-!p2@NFATC2!0.95!10.26!NFATC2;;chr19:33793430..33793447,-!p1@CEBPA!0.93!32.50!CEBPA;;chr12:54785054..54785072,-!p4@ZNF385A!0.93!8.55!ZNF385A;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.55!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!0.92!10.26!FOXF2;;chr6:34204973..34204990,+!p4@HMGA1!0.90!97.51!HMGA1;;chr1:204042233..204042249,+!p1@SOX13!0.90!46.19!SOX13;;chr19:38720294..38720348,-!p1@DPF1!0.89!8.55!DPF1;;chr5:172662197..172662216,-!p1@NKX2-5!0.89!6.84!NKX2-5;;chr8:55370487..55370503,+!p1@SOX17!0.89!6.84!SOX17;;chr8:72756522..72756533,-!p13@MSC!0.89!6.84!MSC;;chr16:29819122..29819141,+!p34@MAZ!0.89!6.84!MAZ;;chr16:67198633..67198671,+!p1@HSF4!0.89!6.84!HSF4;;chr17:37764128..37764258,-!p1@NEUROD2!0.89!6.84!NEUROD2;;chr17:46682321..46682362,-!p1@HOXB6!0.89!6.84!HOXB6;;chr2:5832493..5832507,+!p2@SOX11!0.89!6.84!SOX11;;chr3:189507432..189507459,+!p1@TP63!0.89!6.84!TP63;;chr12:54393880..54393962,+!p1@HOXC9!0.89!6.84!HOXC9;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.82!OSR1;;chr17:41623692..41623715,-!p1@ETV4!0.87!29.08!ETV4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.87!6.84!GLIS1;;chr19:3572925..3573014,+!p1@HMG20B!0.85!188.18!HMG20B;;chr11:65667846..65667868,-!p1@FOSL1!0.85!171.07!FOSL1;;chr2:74730430..74730451,-!p1@LBX2!0.85!10.26!LBX2;;chr8:37553292..37553317,+!p1@ZNF703!0.83!145.41!ZNF703;;chr20:32274179..32274213,-!p1@E2F1!0.83!41.06!E2F1;;chr17:59477197..59477212,+!p2@TBX2!0.83!10.26!TBX2;;chr2:71127699..71127744,+!p1@VAX2!0.82!11.98!VAX2;;chr17:7492684..7492778,-!p2@SOX15!0.81!11.98!SOX15;;chr9:102584159..102584174,+!p2@NR4A3!0.81!10.26!NR4A3;;chr19:35759824..35759891,+!p1@USF2!0.80!177.92!USF2;;chr12:2986275..2986363,-!p1@FOXM1!0.80!58.16!FOXM1;;chr8:128748308..128748324,+!p2@MYC!0.79!157.39!MYC;;chr19:42788611..42788634,+!p2@CIC!0.79!8.55!CIC;;chr11:62369806..62369837,-!p8@MTA2!0.79!6.84!MTA2;;chr8:72756213..72756243,-!p5@MSC!0.79!6.84!MSC;;chr5:134369879..134369898,-!p2@PITX1!0.79!5.13!PITX1;;chr7:27205136..27205164,-!p1@HOXA9!0.79!5.13!HOXA9;;chr19:46801639..46801699,+!p1@HIF3A!0.79!5.13!HIF3A;;chr19:57946675..57946680,+!p2@ZNF749!0.79!5.13!ZNF749;;chr1:203055129..203055147,-!p1@MYOG!0.79!5.13!MYOG;;chr2:145271342..145271377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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000148;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002567
 |ffid_belonging_in_development=CL:0000133,CL:0000221
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor3.CNhs12033.11423-118G1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor3.CNhs12033.11423-118G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor3.CNhs12033.11423-118G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor3.CNhs12033.11423-118G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor3.CNhs12033.11423-118G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11423-118G1
 |is_a=EFO:0002091;;FF:0000090
 |is_obsolete=
+|library_id=CNhs12033
+|library_id_phase_based=2:CNhs12033
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11423
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GTTTCG.11423
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11423
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GTTTCG.11423
 |name=Melanocyte - light, donor3
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12033,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10009,,,
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@@ Line 62: / Line 82: @@
 |rna_tube_id=118G1
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10009.GTTTCG
 |sample_age=neonatal
 |sample_category=primary cells
@@ Line 85: / Line 106: @@
 |top_motifs=ZNF423:2.27751302525;ESRRA:2.18095642496;NFE2L1:1.74816082231;ZNF238:1.55956520847;HES1:1.52861958678;RXR{A,B,G}:1.42296085732;NR3C1:1.39011788766;NR5A1,2:1.34554612342;TBP:1.3347775567;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.32992815527;GZF1:1.27697218753;TFCP2:1.23802406677;bHLH_family:1.21529837866;PAX6:1.19075619165;HOX{A6,A7,B6,B7}:1.14380345684;GTF2A1,2:1.12146822092;IKZF1:1.08841803598;POU6F1:1.05019286461;HMX1:1.03133846836;TLX1..3_NFIC{dimer}:1.02639283671;POU2F1..3:1.00936128365;SOX{8,9,10}:0.920423279001;AR:0.890274529377;GLI1..3:0.889017641919;XCPE1{core}:0.884044106139;TP53:0.813077176082;SP1:0.770955766657;LHX3,4:0.75734783969;REST:0.753150146038;EBF1:0.742247151474;GCM1,2:0.733268235752;ZNF148:0.714703668771;GFI1:0.6959512459;ESR1:0.691067643388;RXRA_VDR{dimer}:0.631662720607;PRRX1,2:0.624827811962;HOX{A4,D4}:0.61875391683;POU3F1..4:0.60550689497;TFAP2{A,C}:0.577256180269;SREBF1,2:0.576701724515;MYOD1:0.533833463208;GTF2I:0.530034235036;FOXL1:0.52848505539;TFDP1:0.522299212843;NKX2-3_NKX2-5:0.508253127631;LMO2:0.508091313541;SPZ1:0.496513794104;SMAD1..7,9:0.457581516254;TFAP2B:0.418186747797;GFI1B:0.41787525266;EN1,2:0.398819234985;NANOG:0.387611665239;HIC1:0.361890885249;HNF4A_NR2F1,2:0.326000155028;NFY{A,B,C}:0.313121513303;SOX17:0.309529993147;MED-1{core}:0.309427499271;ZBTB6:0.287017223723;STAT2,4,6:0.249534539008;ONECUT1,2:0.217465682461;MAZ:0.214478790301;NFE2:0.209413848163;UFEwm:0.204791833804;PAX5:0.189724203228;FOSL2:0.181610018246;ATF6:0.176360142923;PAX2:0.165330870249;TOPORS:0.140594184751;EP300:0.140414347731;TFAP4:0.133322445691;POU1F1:0.129771222053;TAL1_TCF{3,4,12}:0.127840874892;MEF2{A,B,C,D}:0.126773066679;MTF1:0.121385575583;EGR1..3:0.121324921634;XBP1:0.118331386276;KLF4:0.113563852318;PAX8:0.110166883175;TEAD1:0.109018514787;YY1:0.105698289074;SRF:0.0908531125175;ZIC1..3:0.0891589360404;FOXQ1:0.0636431462692;FOS_FOS{B,L1}_JUN{B,D}:0.0522948587409;MZF1:0.0483140111324;AHR_ARNT_ARNT2:0.0481026014352;HOX{A5,B5}:0.0367561025651;CUX2:0.00838262792803;HNF1A:-0.0145568655062;ATF2:-0.0268273799609;E2F1..5:-0.0377117436773;DBP:-0.0417081887878;SOX5:-0.0420722878832;PPARG:-0.0625934705664;GATA6:-0.0660167078838;BACH2:-0.0694873051982;ARID5B:-0.0776351783027;SOX2:-0.0802122646275;NFE2L2:-0.0843058940102;NFIL3:-0.0909616657286;RORA:-0.108832753098;ZNF384:-0.137619603517;PAX1,9:-0.149604428823;NHLH1,2:-0.151923900462;MYBL2:-0.155564643935;CDC5L:-0.171931513391;LEF1_TCF7_TCF7L1,2:-0.175744608869;PBX1:-0.190643581318;RUNX1..3:-0.194446525201;HBP1_HMGB_SSRP1_UBTF:-0.206953782441;NANOG{mouse}:-0.21170783603;MAFB:-0.221214554069;JUN:-0.230112948474;BREu{core}:-0.241353690524;PATZ1:-0.246009071332;ETS1,2:-0.278484433364;MYFfamily:-0.288076013717;FOXP3:-0.294309685875;STAT5{A,B}:-0.303835146971;ZEB1:-0.310704036383;NFKB1_REL_RELA:-0.340263482063;ZNF143:-0.340405254004;RREB1:-0.34536637711;SNAI1..3:-0.354842600044;SPIB:-0.358396341862;OCT4_SOX2{dimer}:-0.359920778271;ADNP_IRX_SIX_ZHX:-0.360188590245;MTE{core}:-0.360894696119;CEBPA,B_DDIT3:-0.382507031163;RFX1:-0.400588366206;FOX{F1,F2,J1}:-0.404215519638;HLF:-0.414182274455;HAND1,2:-0.41658451735;PAX3,7:-0.430893789614;HOXA9_MEIS1:-0.439604732417;HIF1A:-0.440692015928;NFIX:-0.449989148842;PAX4:-0.463602685595;SPI1:-0.46779604611;FOX{D1,D2}:-0.474596547692;FOXM1:-0.506265024814;ZFP161:-0.512685318198;ALX4:-0.543695251399;ATF4:-0.594906726255;TLX2:-0.607439499167;TGIF1:-0.611268642817;NR6A1:-0.618104192892;TBX4,5:-0.64364697628;NFATC1..3:-0.668137910307;PRDM1:-0.691207565634;VSX1,2:-0.692144616307;ATF5_CREB3:-0.706333124861;POU5F1:-0.71135631222;NKX3-2:-0.717626218808;MYB:-0.726521263643;FOXO1,3,4:-0.784993852522;NKX6-1,2:-0.796135910597;RFX2..5_RFXANK_RFXAP:-0.812724681233;HSF1,2:-0.854813118965;AIRE:-0.855983150223;CRX:-0.859497147097;IRF7:-0.885484591299;FOXA2:-0.888528861255;FOX{I1,J2}:-0.933261975425;NKX2-1,4:-0.93373225529;IRF1,2:-0.951746091876;CREB1:-0.954492998693;ELF1,2,4:-0.963846560396;RBPJ:-0.991810054549;NRF1:-1.01920986791;DMAP1_NCOR{1,2}_SMARC:-1.03498794012;T:-1.03801721468;PITX1..3:-1.05939853337;GATA4:-1.10002776295;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.13892765399;TEF:-1.18602770232;FOXP1:-1.22807738642;ELK1,4_GABP{A,B1}:-1.28139991143;IKZF2:-1.29983802621;EVI1:-1.30861990315;ALX1:-1.32144015519;PDX1:-1.32908335304;NR1H4:-1.36825632158;ZBTB16:-1.41201715251;STAT1,3:-1.41633088676;BPTF:-1.43986367697;FOXD3:-1.49436342195;HMGA1,2:-1.52990916534;NKX3-1:-1.56938771594;CDX1,2,4:-1.59020080106;FOXN1:-2.0784870279;NKX2-2,8:-2.24053604494
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11423-118G1;search_select_hide=table117:FF:11423-118G1
 }}

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