FFCP PHASE1:Hg19::chr17:48274000..48274037,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-44bp_to_ENST00000485870_5end | |||
|cluster_id=chr17:48274000..48274037,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_39_at_COL1A1_5end | |||
|id=chr17:48274000..48274037,- | |||
|ontology_enrichment_celltype=CL:0000055!5.82e-38!180;CL:0000057!5.00e-25!75;CL:0000183!1.86e-16!59;CL:0000680!6.20e-16!57;CL:0000056!6.20e-16!57;CL:0000355!6.20e-16!57;CL:0000187!2.42e-15!54;CL:0000048!2.00e-14!430;CL:0000723!2.06e-13!436;CL:0000034!1.12e-12!444;CL:0000393!1.13e-12!60;CL:0000211!1.13e-12!60;CL:0000192!4.66e-12!42;CL:0000514!4.66e-12!42;CL:0002371!4.72e-09!591;CL:0000144!6.11e-09!625;CL:0002620!2.60e-08!23;CL:0002334!2.73e-08!12;CL:0000359!1.10e-07!32;CL:0002494!1.50e-07!16;CL:0000499!4.82e-07!27;CL:0002320!9.74e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.78e-12;55!CL:0000723;7.61e-12;61!CL:0000048;1.63e-11;58!CL:0002334;3.84e-09;12!CL:0002320;6.86e-09;188!CL:0002494;8.58e-09;16!CL:0000057;2.41e-08;73!CL:0000034;5.17e-08;69!CL:0002570;5.53e-08;8!CL:0000499;1.17e-07;28!CL:0000187;1.76e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.27e-23,76;CL:0000048,4.35e-19,427;CL:0000723,3.47e-18,433;CL:0000034,4.95e-17,441;CL:0000680,1.05e-11,58;CL:0000056,1.05e-11,58;CL:0000355,1.05e-11,58;CL:0000187,1.91e-11,55;CL:0002320,5.06e-11,361;CL:0000134,4.75e-10,354;CL:0000393,2.56e-09,61;CL:0000211,2.56e-09,61;CL:0002334,3.77e-09,12;CL:0002494,1.32e-08,16;CL:0000192,4.85e-08,43;CL:0000514,4.85e-08,43;CL:0000219,4.88e-08,386;CL:0002570,4.99e-08,8;CL:0000499,1.24e-07,28;CL:0002620,8.29e-07,23;CL:0000136,8.39e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000355;3.72e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!7.95e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.33e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.14e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.32e-17!83;UBERON:0002329!1.32e-17!83;UBERON:0003077!1.32e-17!83;UBERON:0003059!1.32e-17!83;UBERON:0007282!1.32e-17!83;UBERON:0009618!1.32e-17!83;UBERON:0007285!1.32e-17!83;UBERON:0004290!3.04e-16!70;UBERON:0001134!4.06e-16!61;UBERON:0002036!4.06e-16!61;UBERON:0003082!4.06e-16!61;UBERON:0002385!5.21e-15!63;UBERON:0001015!5.21e-15!63;UBERON:0000383!5.21e-15!63;UBERON:0000486!3.49e-13!82;UBERON:0005256!2.31e-12!143;UBERON:0001013!4.91e-09!14;UBERON:0002100!4.70e-08!216;UBERON:0004872!6.74e-07!84;UBERON:0002384!8.33e-07!375;UBERON:0000475!9.19e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.91e-10;14!UBERON:0002384;1.14e-08;198!UBERON:0004457;1.66e-07;9!UBERON:0000042;1.66e-07;9!UBERON:0003688;1.98e-07;6!UBERON:0002358;1.98e-07;6!UBERON:0003684;1.98e-07;6!UBERON:0001178;1.98e-07;6!UBERON:0003104;2.20e-07;7!UBERON:0009142;2.20e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.33e-12,62;UBERON:0002036,2.33e-12,62;UBERON:0003082,2.33e-12,62;UBERON:0002385,1.31e-11,64;UBERON:0001015,1.31e-11,64;UBERON:0000383,1.31e-11,64;UBERON:0007524,2.95e-11,73;UBERON:0002384,3.12e-11,371;UBERON:0002329,6.19e-11,71;UBERON:0003059,6.19e-11,71;UBERON:0007282,6.19e-11,71;UBERON:0004290,6.19e-11,71;UBERON:0009618,6.19e-11,71;UBERON:0003077,1.28e-10,72;UBERON:0007285,1.28e-10,72;UBERON:0001013,1.93e-10,14;UBERON:0007503,3.99e-10,78;UBERON:0000486,4.79e-09,83;UBERON:0003688,2.29e-07,6;UBERON:0002358,2.29e-07,6;UBERON:0003684,2.29e-07,6;UBERON:0001178,2.29e-07,6;UBERON:0003104,2.42e-07,160;UBERON:0009142,2.42e-07,160;UBERON:0005256,2.75e-07,122 | |||
|phase1_expression=6.35874327446948,8.99222200342129,7.75249222527841,7.00513088471913,15.1966772105278,11.3404008133048,12.6649939084155,1.26343974685366,1.30592814099919,0,0,0.873765488520689,2.37390280405608,0.74259811776028,3.64537113300707,0.672325146451775,0.602694528023977,0,0.487932798790507,1.35433163884467,4.89601658986207,3.44800193625897,0.286235987131057,0.273748850145768,0.87879847716362,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,2.01210257911091,2.68511379871414,6.14446559053763,3.50936537445123,4.05570253090306,0.795285947051099,11.6792368872633,0.283604451492204,2.21729397462564,3.07421749925941,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8364853915472,3.79891534993739,2.38336525463794,19.5048902109193,6.02936249737207,1.12135520028461,4.2699598291882,9.37336683985208,1.24484414159907,4.17603083416033,1.30769522490767,3.32986340818849,7.49028701823999,0.468642863667593,0,0,0.747243402759005,0.469737994575059,0.809364721840658,0.842704840213491,0.816616685019573,0.737005903870608,1.34323515528495,5.94001428641027,18.2977527666132,6.37112953356618,10.7792721272436,0.505008341862199,0.750711119231785,0,1.75591048352335,11.0335606487647,11.568330535808,0.680593098960126,7.5343646989322,7.901623386287,6.35795703478686,9.60291507470087,4.53431128649131,5.41045134095821,3.53622027030021,7.76371128309825,5.16416127354353,5.3011092591264,5.43094401989566,5.33431987502079,9.58525899794859,2.72030665214629,1.86516651541536,0,0.545492241181669,0,0,0.132529768321485,0,0.207322110030741,0,0.36497735907583,7.8224766164908,2.57296375277154,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,6.9967581926338,22.0513067078313,0,0,0,0,0,0.686271241194102,0,0,0,0,0.325808305310325,0,0,0.34779121492523,0.821860859650752,0,0,0,0,0,0,0,0,0,0.503946384596579,0,0,0,0.383382679165211,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,1.12131084345361,2.61576041299968,0.95339771567235,3.49033632546,21.4593867511129,5.071816515336,3.72313363218819,4.16029747645464,0.514414748524284,0,1.0656887160644,4.00338382242813,18.4491345833091,4.93944202068461,1.62868092146868,3.19852753868291,2.37585561880029,0.602878754119172,0,0.299918973546171,0,0,0,7.18874566474748,14.9320516584348,0,1.44781306667579,1.02738161275192,0.179060963239896,0,0,0,0,0.254094624222463,1.30139853857622,0,0,0,0,0,0,0.981531933753119,2.50085260529839,0.271265023699736,25.7883868298201,21.9467656220509,11.8276811275451,6.44277782459923,3.61135319673263,22.7407504055985,2.0694614258501,2.65690239414175,8.48098175291834,1.04260337361699,5.48243240895674,12.3531632571908,0,0,0,0.303127571446259,3.32870879020994,6.04780586659361,7.19512642674453,7.67309866440312,31.4339305765042,11.2762451345017,7.16390148693385,16.2462460355044,11.8734453155993,1.23367755042124,6.39222211127257,0.739144404124282,1.55776328755086,2.67283870457906,0,0.200506470303285,0,2.87036120411517,6.19109971222838,4.45823010862042,0,0,0.784349769176855,0,0,0,0,0.647747748306418,1.54227252690289,0.541892875087706,2.00675909541941,0,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0.183138929636687,0.742585499285292,0.574265537996172,0,1.6068392984416,0.48335359146061,1.54048617114644,1.84204409671355,1.10269257987624,1.28904293841928,3.62541734785571,1.19317278382541,7.30062692303246,0,0.576570202095319,0.127612712494584,0.10115778085555,0.929691098594572,14.1665556073788,0,2.46426864140871,1.59691809095107,0,0.18532421910392,0.715624433709956,1.86079184679834,3.16379424718726,9.91277008403889,2.55897791311334,2.56763392820352,2.22742273548156,8.63443504219153,1.79872457583315,6.58888871366531,6.12624492197569,0.202182481573316,1.58510321173008,2.10629228119491,3.90106991271672,0.731140468893853,2.11300293513511,3.68549760801562,7.91870418940791,3.39024349860728,2.2054613741845,0,0.876901770507525,4.6302042741335,6.55894752046633,0.608731130888112,0.92947049429925,4.7888252430481,1.00387946542836,2.35797698431491,1.07001315444375,0.354761064070598,3.79993743535795,5.59801318031833,1.51789269506286,1.39973888097993,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.597743964753209,0.828851746593443,0,0,0,8.08702927920699,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07730361905316,0.227884111694002,0,0,0.217294743844016,0.31900115973192,2.47313502185028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4441205797345,0,0,0,0,13.6438200040794,0,0,0,0,0,4.83962864194656,0.30607276163049,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0.0967563312890851,0.0730893170861856,0,0.0969890164884194,0.0882561266915003,2.71176888936639,0,0,0,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,0,3.43812353135966,0.262887354279314,1.67569440763353,0,0,0.199679000498991,0,0.223171457441873,0.335917362433631,9.7280968556449,0,0,0,0,0,0,0,0.136203406111576,0,0.137539436597234,0,0,0,0,0,0,0.209818352539992,0,0,0,0,0,2.034148301238,0,1.72844298240254,3.26587360109409,1.19730191562487,0,3.23737241392301,0,0,1.32506888912221,0,0,0,0,0.106787412567695,0.943225830597996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.82093731258809,8.17996584465286,5.54805861502613,1.89403005275089,3.0188148210309,1.77962244319307,1.37304041038154,6.04923695052956,5.44030202039732,1.18284119991707,1.59296767163702,1.79921244865442,4.03683687878274,1.24411862352257,6.38020114939188,6.78268580355254,9.46622936682476,4.56966254602554,4.06870733204662,3.09142720644351,2.90008504014719,1.39210127963548,9.15620544006817,1.20008329398946,7.21130980883865,8.41873721914798,0,0,0,0,1.13352962756136,1.389134845943,1.22368352253234,0.358177682162975,0.617602894321944,1.75427239662966,0.176689145945881,0.38582807654183,0,0,0.345430341731199,0,0,0,0,0,3.27609848846413,0,0,0,0,0,0,0.552317850755522,0,0,0,0,0,0,0,0,0,0,11.1301522728697,0,0,13.401685860246,4.593682160298,0,0,0,0,0,0,0,0,0,0,0,0,20.2132510597599,0,1.39241355481392,0.150420656698515,3.63069123666336,0,0,0,0,0,0,0,0,0.546974809018219,0,0.496211178389294,0,0,0,0,0,0,0.532214220975833,0,0.171488009437418,0,0,0,0,0,0,0,7.30526976407596,0,0,0,0,0,0,7.21540228257228,0,0,0,0,0,0,0.846774100381858,0,0.31020638566432,0,0,0,0,0,0,17.397216470073,51.9710762573279,0,0,0,0,0,0,0,1.74847648403166,0,0,0,0,0,12.679671827502,6.62715747282486,0,0.128915775947154,0,0,0,0,2.19100916473955,0,0,0,0,0.436350690340377,4.7612415646386,27.5276313443396,15.2517957448368,17.7376890470754,0,0,0.253397002022874,0,0,0,0,0.227336094654718,0,0,0,0.639701945702943,3.57096647195611,0,0,0.448527450322454,0.0636471582781649,4.04234377916439,0,2.05339980651169,0.0673520530145875,0,13.3064142618405,0,0,3.8614456457388,0,23.4640942403454,0.488965776731466,8.13792356631477,0,0.201273793591026,0 | |||
|short_description=p39@COL1A1 | |||
}} |
Latest revision as of 01:10, 16 September 2015
Short description: | p39@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_39_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -44bp_to_ENST00000485870_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.27e-23 | 76 |
multi fate stem cell | 4.35e-19 | 427 |
somatic stem cell | 3.47e-18 | 433 |
stem cell | 4.95e-17 | 441 |
muscle precursor cell | 1.05e-11 | 58 |
myoblast | 1.05e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.05e-11 | 58 |
muscle cell | 1.91e-11 | 55 |
connective tissue cell | 5.06e-11 | 361 |
mesenchymal cell | 4.75e-10 | 354 |
electrically responsive cell | 2.56e-09 | 61 |
electrically active cell | 2.56e-09 | 61 |
preadipocyte | 3.77e-09 | 12 |
cardiocyte | 1.32e-08 | 16 |
smooth muscle cell | 4.85e-08 | 43 |
smooth muscle myoblast | 4.85e-08 | 43 |
motile cell | 4.88e-08 | 386 |
mesenchymal stem cell of adipose | 4.99e-08 | 8 |
stromal cell | 1.24e-07 | 28 |
skin fibroblast | 8.29e-07 | 23 |
fat cell | 8.39e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 2.33e-12 | 62 |
striated muscle tissue | 2.33e-12 | 62 |
myotome | 2.33e-12 | 62 |
muscle tissue | 1.31e-11 | 64 |
musculature | 1.31e-11 | 64 |
musculature of body | 1.31e-11 | 64 |
dense mesenchyme tissue | 2.95e-11 | 73 |
connective tissue | 3.12e-11 | 371 |
somite | 6.19e-11 | 71 |
presomitic mesoderm | 6.19e-11 | 71 |
presumptive segmental plate | 6.19e-11 | 71 |
dermomyotome | 6.19e-11 | 71 |
trunk paraxial mesoderm | 6.19e-11 | 71 |
paraxial mesoderm | 1.28e-10 | 72 |
presumptive paraxial mesoderm | 1.28e-10 | 72 |
adipose tissue | 1.93e-10 | 14 |
epithelial vesicle | 3.99e-10 | 78 |
multilaminar epithelium | 4.79e-09 | 83 |
omentum | 2.29e-07 | 6 |
peritoneum | 2.29e-07 | 6 |
abdominal cavity | 2.29e-07 | 6 |
visceral peritoneum | 2.29e-07 | 6 |
mesenchyme | 2.42e-07 | 160 |
entire embryonic mesenchyme | 2.42e-07 | 160 |
trunk mesenchyme | 2.75e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.14e-08 | 14 |