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MCL coexpression mm9:389: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!2.27e-28!64;UBERON:0003075!2.27e-28!64;UBERON:0007284!2.27e-28!64;UBERON:0003056!7.30e-24!49;UBERON:0010371!1.62e-23!73;UBERON:0000073!4.73e-23!54;UBERON:0001049!1.15e-22!52;UBERON:0005068!1.15e-22!52;UBERON:0006241!1.15e-22!52;UBERON:0007135!1.15e-22!52;UBERON:0000955!5.90e-21!47;UBERON:0006238!5.90e-21!47;UBERON:0002616!1.00e-19!46;UBERON:0004121!3.67e-19!95;UBERON:0000924!3.67e-19!95;UBERON:0006601!3.67e-19!95;UBERON:0002021!2.50e-17!10;UBERON:0000411!2.50e-17!10;UBERON:0001950!2.50e-17!10;UBERON:0001017!2.89e-17!73;UBERON:0003080!1.17e-16!40;UBERON:0001016!1.51e-16!75;UBERON:0010314!2.01e-16!92;UBERON:0002780!1.66e-15!39;UBERON:0001890!1.66e-15!39;UBERON:0006240!1.66e-15!39;UBERON:0002020!5.31e-15!34;UBERON:0003528!2.14e-13!29;UBERON:0002791!2.14e-13!29;UBERON:0001893!2.14e-13!29;UBERON:0002619!4.91e-13!17;UBERON:0000956!8.77e-12!21;UBERON:0001869!8.77e-12!21;UBERON:0000203!8.77e-12!21;UBERON:0000970!1.84e-08!9;UBERON:0000019!1.84e-08!9;UBERON:0000047!1.84e-08!9;UBERON:0010312!1.84e-08!9;UBERON:0004088!1.84e-08!9;UBERON:0002104!1.84e-08!9;UBERON:0001456!1.84e-08!9;UBERON:0003072!1.84e-08!9;UBERON:0004128!1.84e-08!9;UBERON:0003071!1.84e-08!9
|ontology_enrichment_uberon=UBERON:0002346!2.27e-28!64;UBERON:0003075!2.27e-28!64;UBERON:0007284!2.27e-28!64;UBERON:0003056!7.30e-24!49;UBERON:0010371!1.62e-23!73;UBERON:0000073!4.73e-23!54;UBERON:0001049!1.15e-22!52;UBERON:0005068!1.15e-22!52;UBERON:0006241!1.15e-22!52;UBERON:0007135!1.15e-22!52;UBERON:0000955!5.90e-21!47;UBERON:0006238!5.90e-21!47;UBERON:0002616!1.00e-19!46;UBERON:0004121!3.67e-19!95;UBERON:0000924!3.67e-19!95;UBERON:0006601!3.67e-19!95;UBERON:0002021!2.50e-17!10;UBERON:0000411!2.50e-17!10;UBERON:0001950!2.50e-17!10;UBERON:0001017!2.89e-17!73;UBERON:0003080!1.17e-16!40;UBERON:0001016!1.51e-16!75;UBERON:0010314!2.01e-16!92;UBERON:0002780!1.66e-15!39;UBERON:0001890!1.66e-15!39;UBERON:0006240!1.66e-15!39;UBERON:0002020!5.31e-15!34;UBERON:0003528!2.14e-13!29;UBERON:0002791!2.14e-13!29;UBERON:0001893!2.14e-13!29;UBERON:0002619!4.91e-13!17;UBERON:0000956!8.77e-12!21;UBERON:0001869!8.77e-12!21;UBERON:0000203!8.77e-12!21;UBERON:0000970!1.84e-08!9;UBERON:0000019!1.84e-08!9;UBERON:0000047!1.84e-08!9;UBERON:0010312!1.84e-08!9;UBERON:0004088!1.84e-08!9;UBERON:0002104!1.84e-08!9;UBERON:0001456!1.84e-08!9;UBERON:0003072!1.84e-08!9;UBERON:0004128!1.84e-08!9;UBERON:0003071!1.84e-08!9
|tfbs_overrepresentation_for_novel_motifs=0.149902,0.00500755,0.415689,1.01095,0.531164,0.188081,0.254787,0.891484,0.140922,0.0966197,0.221763,0.687282,0.130811,0.264234,0.0791346,0,0.42315,0.876905,0.514215,0.245228,0.111207,0.0215888,0.728683,0.527336,0.427698,0.285776,0.486875,0.202945,0.0941661,0.179315,0.192916,0.512187,0.23475,0.221918,0.574198,0.0459596,0.834323,0.242872,0.430935,0.159278,0.521182,0.196576,0.411267,0.578047,0.313944,0.170437,0.355451,0.214351,0.32395,0.317394,0.408111,0.307229,0.063174,0.641205,0.657376,0.269785,0.100694,0.23598,0.242162,0.268198,0.494318,0.314847,0.354886,0.398468,0.278491,0.433342,0.785371,1.12243,0.490165,0.979213,0.12178,0.136992,0.729635,0.6886,0.0208952,0.660397,0.088252,0.346003,1.20472,0.736885,0.138314,0.438213,0.842599,0.542417,0.582029,0.0152094,0.931891,0.0686434,0.944781,1.2816,0.851763,0.586575,0.523661,0.0737837,1.59853,0.677511,0.555715,0.526183,0.355664,0.0526066,0.222463,0.511936,0.625103,0.408622,0.407717,0.196264,0.459578,0.211422,0.116526,0.112248,0.145352,0.626748,0.739879,0.225582,0.858505,0.88475,0.25446,0.180644,0.424276,0.217483,1.6568,0.380657,0.782806,0.913128,0.910454,0.482363,0.261058,0.517583,0.783932,0.553379,0.609469,0.5148,0.75595,0.280468,0.879201,0.0658603,0.471259,0.197578,0.832159,1.64606,1.25025,0.789841,0.804509,0.521565,0.402166,0.196898,0.941495,1.60668,0.156941,0.0717633,0.183779,0.0028093,0.642658,0.0459937,0.27974,0.718834,0.30804,1.01394,1.42746,0.155206,0.841238,0.581248,0.482758,0.442531,0.39934,0.752521,0.0613242,0.244407,0.00460653
}}
}}

Revision as of 18:16, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:110684912..110684948,+p@chr10:110684912..110684948
+
Mm9::chr10:73308096..73308100,+p@chr10:73308096..73308100
+
Mm9::chr10:74010609..74010633,+p@chr10:74010609..74010633
+
Mm9::chr11:78104371..78104386,+p2@BC030499
Mm9::chr11:78110831..78110835,+p@chr11:78110831..78110835
+
Mm9::chr13:118513706..118513707,+p@chr13:118513706..118513707
+
Mm9::chr13:92901773..92901792,-p1@ENSMUST00000146492
Mm9::chr13:96020223..96020286,-p1@Pde8b
Mm9::chr14:65199596..65199607,+p@chr14:65199596..65199607
+
Mm9::chr16:67519751..67519767,-p@chr16:67519751..67519767
-
Mm9::chr18:43037587..43037592,-p@chr18:43037587..43037592
-
Mm9::chr3:36121224..36121240,-p1@Qrfpr
Mm9::chr4:154932219..154932224,+p@chr4:154932219..154932224
+
Mm9::chr5:22414151..22414177,+p@chr5:22414151..22414177
+
Mm9::chr7:97668047..97668051,+p@chr7:97668047..97668051
+
Mm9::chr9:45284419..45284424,+p@chr9:45284419..45284424
+
Mm9::chr9:45403762..45403808,+p@chr9:45403762..45403808
+
Mm9::chr9:57454001..57454012,-p2@Cplx3
Mm9::chr9:57454041..57454067,-p1@Cplx3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
neurectoderm2.27e-2864
neural plate2.27e-2864
presumptive neural plate2.27e-2864
pre-chordal neural plate7.30e-2449
ecto-epithelium1.62e-2373
regional part of nervous system4.73e-2354
neural tube1.15e-2252
neural rod1.15e-2252
future spinal cord1.15e-2252
neural keel1.15e-2252
brain5.90e-2147
future brain5.90e-2147
regional part of brain1.00e-1946
ectoderm-derived structure3.67e-1995
ectoderm3.67e-1995
presumptive ectoderm3.67e-1995
occipital lobe2.50e-1710
visual cortex2.50e-1710
neocortex2.50e-1710
central nervous system2.89e-1773
anterior neural tube1.17e-1640
nervous system1.51e-1675
structure with developmental contribution from neural crest2.01e-1692
regional part of forebrain1.66e-1539
forebrain1.66e-1539
future forebrain1.66e-1539
gray matter5.31e-1534
brain grey matter2.14e-1329
regional part of telencephalon2.14e-1329
telencephalon2.14e-1329
regional part of cerebral cortex4.91e-1317
cerebral cortex8.77e-1221
cerebral hemisphere8.77e-1221
pallium8.77e-1221
eye1.84e-089
camera-type eye1.84e-089
simple eye1.84e-089
immature eye1.84e-089
ocular region1.84e-089
visual system1.84e-089
face1.84e-089
optic cup1.84e-089
optic vesicle1.84e-089
eye primordium1.84e-089


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}