FFCP PHASE1:Hg19::chrX:111880891..111880925,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:111880891..111880925,+
|short_description=p@chrX:111880891..111880925,+
|description=CAGE_peak_at_chrX:111880891..111880925,+
|association_with_transcript=...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chrX:111880891..111880925,+ | |||
|description=CAGE_peak_at_chrX:111880891..111880925,+ | |||
|id=chrX:111880891..111880925,+ | |||
|ontology_enrichment_celltype=CL:0000359!3.39e-26!32;CL:0000192!5.25e-19!42;CL:0000514!5.25e-19!42;CL:0002539!8.68e-18!10;CL:0000055!3.08e-14!180;CL:0000187!6.48e-14!54;CL:0000680!5.57e-13!57;CL:0000056!5.57e-13!57;CL:0000355!5.57e-13!57;CL:0000183!2.07e-12!59;CL:0000393!3.85e-12!60;CL:0000211!3.85e-12!60;CL:0002620!1.53e-11!23;CL:0000222!1.43e-08!119;CL:0002595!1.20e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002595;1.48e-18;5!CL:0002593;2.45e-12;2!CL:0000359;8.12e-11;32!CL:0002620;2.82e-09;23!CL:0002594;8.37e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,1.24e-18,5;CL:0002593,1.65e-12,2;CL:0000359,2.33e-11,32;CL:0002620,2.55e-09,23;CL:0000192,1.51e-08,43;CL:0000514,1.51e-08,43;CL:0000187,9.43e-07,55;CL:0002594,9.63e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!5.54e-07!5;DOID:450!5.54e-07!5;DOID:66!5.54e-07!5;DOID:423!5.54e-07!5;DOID:0080000!5.54e-07!5;DOID:11722!5.54e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.17e-08;3!DOID:127;1.17e-08;3!DOID:0060072;8.37e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.12e-08,3;DOID:127,1.12e-08,3;DOID:0060072,8.14e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004573!2.92e-19!33;UBERON:0004571!2.92e-19!33;UBERON:0001637!3.40e-19!42;UBERON:0003509!3.40e-19!42;UBERON:0004572!3.40e-19!42;UBERON:0004237!8.68e-18!10;UBERON:0004695!8.68e-18!10;UBERON:0002111!8.68e-18!10;UBERON:0004178!8.68e-18!10;UBERON:0001981!8.06e-16!60;UBERON:0007500!8.06e-16!60;UBERON:0004537!8.06e-16!60;UBERON:0006965!8.06e-16!60;UBERON:0000055!8.66e-15!69;UBERON:0002049!2.49e-12!79;UBERON:0007798!2.49e-12!79;UBERON:0001134!7.02e-12!61;UBERON:0002036!7.02e-12!61;UBERON:0003082!7.02e-12!61;UBERON:0001135!1.66e-11!15;UBERON:0004872!2.03e-11!84;UBERON:0002385!2.20e-11!63;UBERON:0001015!2.20e-11!63;UBERON:0000383!2.20e-11!63;UBERON:0000947!2.79e-10!21;UBERON:0010191!2.79e-10!21;UBERON:0004290!7.13e-10!70;UBERON:0001009!2.71e-09!113;UBERON:0004535!1.22e-08!110;UBERON:0000486!6.70e-08!82;UBERON:0000914!9.19e-08!83;UBERON:0002329!9.19e-08!83;UBERON:0003077!9.19e-08!83;UBERON:0003059!9.19e-08!83;UBERON:0007282!9.19e-08!83;UBERON:0009618!9.19e-08!83;UBERON:0007285!9.19e-08!83;UBERON:0003834!1.20e-07!5;UBERON:0001533!1.20e-07!5;UBERON:0003914!7.14e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;1.48e-18;5!UBERON:0001533;1.48e-18;5!UBERON:0003513;1.49e-13;7!UBERON:0002456;2.45e-12;2!UBERON:0001637;2.46e-07;42!UBERON:0003509;2.46e-07;42!UBERON:0004572;2.46e-07;42!UBERON:0001310;8.37e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,1.24e-18,5;UBERON:0001533,1.24e-18,5;UBERON:0003513,1.31e-13,7;UBERON:0002456,1.65e-12,2;UBERON:0001637,9.61e-09,42;UBERON:0003509,9.61e-09,42;UBERON:0004572,9.61e-09,42;UBERON:0001310,9.63e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.529636723252875,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0,0.211931901159562,0,0.206105058476878,0,0.18611685633159,1.85653965465393,0.584622030967192,0,0.368199594569197,0,1.77504796258307,1.71278566986988,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0.737476674166813,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0.308033580176089,1.06461206063404,0,0.37064843820784,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0.202182481573316,0,0,0,1.94970791705028,0,0,0,0,0,1.32687795048244,0.438450885253763,0,0,0,0.30982349809975,0,0,0.0982490410131212,1.07001315444375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55671706255387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72844298240254,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621051827505038,0,0,0,0.300515217994437,0.380805212168795,0.406870733204662,0,0.322231671127465,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.529636723252875,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0,0.211931901159562,0,0.206105058476878,0,0.18611685633159,1.85653965465393,0.584622030967192,0,0.368199594569197,0,1.77504796258307,1.71278566986988,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0.737476674166813,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0.308033580176089,1.06461206063404,0,0.37064843820784,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0.202182481573316,0,0,0,1.94970791705028,0,0,0,0,0,1.32687795048244,0.438450885253763,0,0,0,0.30982349809975,0,0,0.0982490410131212,1.07001315444375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55671706255387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72844298240254,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621051827505038,0,0,0,0.300515217994437,0.380805212168795,0.406870733204662,0,0.322231671127465,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chrX:111880891..111880925,+ | |||
}} | }} |
Latest revision as of 05:06, 1 August 2015
Short description: | p@chrX:111880891..111880925, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chrX:111880891..111880925, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 1.24e-18 | 5 |
smooth muscle cell of the internal thoracic artery | 1.65e-12 | 2 |
vascular associated smooth muscle cell | 2.33e-11 | 32 |
skin fibroblast | 2.55e-09 | 23 |
smooth muscle cell | 1.51e-08 | 43 |
smooth muscle myoblast | 1.51e-08 | 43 |
muscle cell | 9.43e-07 | 55 |
smooth muscle cell of the umbilical artery | 9.63e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
thoracic segment blood vessel | 1.24e-18 | 5 |
subclavian artery | 1.24e-18 | 5 |
trunk blood vessel | 1.31e-13 | 7 |
internal thoracic artery | 1.65e-12 | 2 |
artery | 9.61e-09 | 42 |
arterial blood vessel | 9.61e-09 | 42 |
arterial system | 9.61e-09 | 42 |
umbilical artery | 9.63e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.12e-08 | 3 |
leiomyoma | 1.12e-08 | 3 |
benign neoplasm | 8.14e-07 | 4 |