Swissregulon:VSX1,2.p1: Difference between revisions
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{{SwissregulonMotif | {{SwissregulonMotif | ||
|associated_transcription_factors=1.000:338917:VSX2:visual system homeobox 2::NM_182894:RET1;0.912:30813:VSX1:visual system homeobox 1::NM_014588:PPD | |||
|datasource=http://www.swissregulon.unibas.ch/ | |datasource=http://www.swissregulon.unibas.ch/ | ||
|gostat_on_mara_hg19=GO:0003002!regionalization!0.0090254679272509!7080;5015;92129;9350$GO:0007167!enzyme linked receptor protein signaling pathway!0.0090254679272509!3645;2044;2984;5015;9350;5148$GO:0032501!multicellular organismal process!0.0090254679272509!121340;6252;94137;7080;4128;3849;29114;140469;5015;9350;387755;768206;23562;8820;64377;92129;4286;5017;5148$GO:0007399!nervous system development!0.0104234473935805!6252;7080;8820;64377;5015;3849;29114;387755$GO:0007417!central nervous system development!0.0104234473935805!7080;8820;64377;5015;29114$GO:0007389!pattern specification process!0.0104234473935805!7080;5015;92129;9350$GO:0006928!cell motility!0.0104234473935805!5276;7080;8936;5015;3849;9350$GO:0051674!localization of cell!0.0104234473935805!5276;7080;8936;5015;3849;9350$GO:0009952!anterior/posterior pattern formation!0.0128770599266212!5015;92129;9350$GO:0009948!anterior/posterior axis specification!0.0128770599266212!92129;9350$GO:0042402!biogenic amine catabolic process!0.0128770599266212!4128;8942$GO:0006366!transcription from RNA polymerase II promoter!0.0170913296743022!121340;4212;23650;5017;7080;463;5015$GO:0042219!amino acid derivative catabolic process!0.0179569648153382!4128;8942$GO:0009798!axis specification!0.0258112888617592!92129;9350$GO:0007275!multicellular organismal development!0.0258112888617592!121340;6252;7080;8820;64377;3849;29114;92129;4286;5017;5015;9350;387755$GO:0006351!transcription, DNA-dependent!0.0258112888617592!121340;4212;57167;7080;124411;163255;23650;63948;463;5015;8820;25888;92129;4286;5017;340260$GO:0032774!RNA biosynthetic process!0.0258112888617592!121340;4212;57167;7080;124411;163255;23650;63948;463;5015;8820;25888;92129;4286;5017;340260$GO:0016070!RNA metabolic process!0.0302259325577022!121340;105;4212;57167;7080;124411;163255;23650;63948;463;5015;51362;8820;25888;92129;4286;5017;340260$GO:0007169!transmembrane receptor protein tyrosine kinase signaling pathway!0.0302259325577022!3645;2044;5015;5148$GO:0007601!visual perception!0.0341519680595066!768206;94137;140469;5148$GO:0050953!sensory perception of light stimulus!0.0341519680595066!768206;94137;140469;5148$GO:0016477!cell migration!0.0366979605276244!7080;5015;3849;9350$GO:0048731!system development!0.0366979605276244!121340;6252;7080;8820;64377;3849;29114;5017;5015;387755$GO:0009953!dorsal/ventral pattern formation!0.0366979605276244!7080;5015$GO:0048699!generation of neurons!0.0366979605276244!6252;7080;5015;3849$GO:0006357!regulation of transcription from RNA polymerase II promoter!0.0366979605276244!121340;4212;5017;7080;5015$GO:0032502!developmental process!0.0366979605276244!121340;6252;7080;8820;64377;3849;29114;92129;4286;5017;63948;5015;9350;117584;387755$GO:0006355!regulation of transcription, DNA-dependent!0.0366979605276244!121340;4212;57167;7080;8820;25888;124411;92129;163255;4286;340260;5017;63948;463;5015$GO:0044464!cell part!0.0366979605276244!121340;6328;57167;6252;7080;4128;3832;54890;112802;124411;140469;163255;79368;7373;23650;8936;1007;5015;8942;117584;387755;2695;57511;2044;115111;9378;2813;6561;64377;92129;340260;5017;105;83743;4212;3849;147183;55366;1008;1562;8560;63948;463;2984;7681;768206;1740;23562;3645;51362;8820;25888;116337;127;4286;2556;151242$GO:0022008!neurogenesis!0.0366979605276244!6252;7080;5015;3849$GO:0042706!eye photoreceptor cell fate commitment!0.0366979605276244!5015$GO:0005596!collagen type XIV!0.0366979605276244!7373$GO:0046552!photoreceptor cell fate commitment!0.0366979605276244!5015$GO:0032980!keratinocyte activation!0.0366979605276244!3849$GO:0000239!pachytene!0.0366979605276244!5017$GO:0004864!protein phosphatase inhibitor activity!0.0366979605276244!9749;151242$GO:0048856!anatomical structure development!0.0390756486813194!121340;6252;7080;8820;64377;3849;29114;5017;5015;9350;387755$GO:0019212!phosphatase inhibitor activity!0.0390756486813194!9749;151242$GO:0044424!intracellular part!0.0412622049980309!121340;57167;6252;7080;4128;3832;112802;140469;163255;7373;23650;8936;5015;8942;117584;387755;57511;64377;92129;340260;5017;105;83743;4212;3849;147183;1562;8560;63948;463;7681;768206;23562;8820;51362;25888;127;4286;151242$GO:0007420!brain development!0.0462037813749756!7080;8820;5015$GO:0006350!transcription!0.0462666094861583!121340;4212;57167;7080;124411;163255;23650;63948;463;5015;8820;25888;92129;4286;5017;340260$GO:0003700!transcription factor activity!0.0491572321038437!4212;7080;8820;5017;23650;340260;63948;463;5015$GO:0010468!regulation of gene expression!0.0491572321038437!121340;4212;57167;7080;124411;163255;63948;463;5015;10289;8820;25888;92129;4286;5017;340260 | |||
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|motif_activities_mm9=0.59572232099,0.47242612339,0.463798288934,0.394705213399,0.24687728167,0.30407609211,0.213644599626,-1.13755699762,-0.830936813877,-0.863680567233,-0.297809883142,-0.522586987719,-0.48381760414,-0.580958844426,-0.868107653453,-1.17479407034,-1.1388755059,-0.598306865224,-0.589239554504,-0.485420305832,-2.03040931956,-0.321988921322,-0.0558469796089,0.198651536577,0.189739138561,0.602554292714,0.645899115559,0.291908416662,-0.103664498481,0.308311834383,-0.0973342406205,-0.331976294366,-0.455104969517,0.11548915618,-0.0509270659483,-0.142350999235,0.00714587483443,-1.27812573572,-1.08852391564,-0.950336837226,-1.69808004647,-1.36115426184,-1.09143069227,-1.17479903026,-1.10930048215,-1.06454029595,-0.597115592438,1.1056102587,0.802892840984,0.629534382086,0.508291825945,0.824842490265,-0.978620037934,-0.695711548881,-0.637363205968,-1.03422295382,-0.55670832459,-0.618945873175,1.9823081991,2.16782628935,2.21682972506,-0.699150595315,0.191573554459,-0.258372895955,-0.141846354779,-0.179042185273,0.313244954875,0.667128505023,1.27913431837,1.19072863421,1.40434563991,1.06232052467,0.882920012176,1.55001574057,1.4434011622,1.84423599707,0.666972527859,0.513711927802,0.254513918796,2.29679432128,1.90941149075,2.18897817906,0.870982371356,1.53052799022,1.18152613104,1.1646468597,0.99572343375,1.8657781174,-0.609460929637,-0.0229202957331,-1.54255839677,-0.833201517896,-0.167513871419,-0.0353694696577,-0.489718083556,-0.115527524781,-1.51555326335,-1.22324419222,-1.29252397023,-0.961837097639,0.20529896584,-0.304026625297,-0.216898912238,0.849432441978,0.241493673164,0.00265603485853,0.239142474058,-2.1852943972,-0.960454855427,0.344630869781,0.51841341273,0.0452840618076,-0.0229645753282,0.0778194895299,-0.182855333951,-0.275751221833,-0.815120173054,-0.782273183968,-1.1517968527,-0.736397094378,-1.23318703187,-1.27722567057,-0.620212977196,2.44463126102,2.02687307728,-0.744347557813,-1.13326888304,-0.721411966018,-0.865645003212,0.98601856828,0.663588511564,0.471688023885,0.917808665887,0.494822262744,1.05431786771,0.853393786116,-0.640715769679,-0.878170559994,-0.967632455169,0.762135029522,1.10280490128,1.22172869949,0.823520794024,1.50446744194,1.13913664515,1.5350791941,1.68460846765,1.69418680542,1.17516164283,0.753797639433,0.856093453291,0.745426238181,1.15278611011,1.82327262265,1.66252055321,-0.143713072179,-0.264616764113,-0.649984011075,-0.634580692177,-0.688540972469,-0.376818125563,-0.0112169534191,-0.0939750283734,-0.11690122674,-0.23008206547,-0.443597366809,-0.211259656158,-0.479479858497,-0.347602675074,-0.529653021275,-0.455580546676,-0.21577053176,-0.300361289233,-0.326397522343,1.11701537071,0.982322447691,-0.0282066669668,-0.384933409574,0.0138037869327,-0.492532290225,0.184456815715,0.0261190783965,0.140086564525,-0.124885448567,-0.815776489637,0.0508985363296,-0.606139195037,-0.504562616485,-0.158127363815,-1.10363556369,-1.11500464476,-0.691917278327,0.898919005806,0.622587381597,0.744234199209,0.270576577428,0.438595144668,0.555154558421,-0.190029220213,-0.351410388514,-0.102859305895,0.0581029918868,0.345222145469,-0.516457130007,-0.38046226413,-0.590999045688,-0.574043178814,-0.596484910658,-0.593737964433,-0.288607988519,-1.4444248884,-0.903503720708,-2.0074514179,-0.764391247162,-0.928983207709,-0.305344659267,-0.659666636828,-0.363186554718,-1.2792486085,0.046586947207,0.151852800641,-0.202876169805,-0.140333379671,-0.35612455937,0.00432476339309,-1.11599190327,-0.921223806559,-0.969180856982,-1.12952942763,-0.839522283799,-0.970308849674,-1.32375054413,-0.572492003707,-0.548362365122,-0.436242843468,-0.321438425732,0.511954635765,0.410703043729,-1.06910117908,-0.554432737303,0.105161493983,0.245042487443,0.486678973129,0.261718334866,0.341950944559,0.545000827121,0.644737138175,0.676774651963,0.575399863509,1.91230526028,-0.29125604684,-0.325142178421,-0.526123781615,-0.41726432223,-0.642168064263,-0.452993507556,-0.524603396705,-1.02783910888,-0.74575256315,-0.746773573609,-0.386248293088,-1.16737605282,-1.44652030502,-1.04868070512,-1.15151982411,-1.26847659107,0.320167331253,1.65460890151,1.4389675879,1.00491830809,0.718019029733,0.532841501335,0.886060186998,0.214853527013,-1.41129208301,-0.51083224374,1.00349826839,2.46291573865,1.06586749878,2.5067209033,3.44479265247,4.08228375642,-0.556897664912,-0.077487625583,-1.27827165596,-0.27473663165,-0.750978472267,-1.28584227592,-1.22677310674,-1.16072644664,-1.25327811572,-1.12258819638,-1.3632213163,-0.908760819368,0.249213274245,0.428260721604,0.0650369756314,0.35181482848,0.248790976437,-0.310162329361,-0.289147043208,-0.0690206519788,-0.901567014914,-0.508527990494,-4.87209244111,0.0269563205598,-0.110934196892,-0.551262244181,-0.855567641611,-0.960259202731,-0.965890087142,-0.693370013934,-0.796682455569,-2.73078544479,-4.89735050584,-1.00161189661,0.475568278153,0.469601576624,-0.203892371692,-0.254782558011,-0.550812295187,-0.605224863892,-0.916885445966,-1.21332900952,-1.1312213388,-0.952327335024,-0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| |||
|name=VSX1,2.p1 | |name=VSX1,2.p1 | ||
|weight_matrix=NA:VSX1,2.p1;PO:A:C:G:T;01:48.51728:25.443674:41.862524:48.520856;02:57.507175:34.191937:43.321771:29.323451;03:46.765726:40.525727:34.301274:42.751607;04:3.924882:18.278522:2.527794:139.613136;05:151.493477:4.864198:4.088868:3.897791;06:156.774576:0.793874:1.774066:5.001818;07:21.747083:0:0:142.597251;08:0.93244:7.974427:5.81866:149.618807;09:143.550965:4.879837:3.713632:12.1999;10:23.250781:12.216732:125.261516:3.615305;11:35.074334:109.507742:15.84331:3.918948;12:39.639904:34.285324:35.994186:54.42492;13:48.123975:44.285418:30.33264:41.602301;14:57.02772:31.725789:42.962314:32.628511 | |weight_matrix=NA:VSX1,2.p1;PO:A:C:G:T;01:48.51728:25.443674:41.862524:48.520856;02:57.507175:34.191937:43.321771:29.323451;03:46.765726:40.525727:34.301274:42.751607;04:3.924882:18.278522:2.527794:139.613136;05:151.493477:4.864198:4.088868:3.897791;06:156.774576:0.793874:1.774066:5.001818;07:21.747083:0:0:142.597251;08:0.93244:7.974427:5.81866:149.618807;09:143.550965:4.879837:3.713632:12.1999;10:23.250781:12.216732:125.261516:3.615305;11:35.074334:109.507742:15.84331:3.918948;12:39.639904:34.285324:35.994186:54.42492;13:48.123975:44.285418:30.33264:41.602301;14:57.02772:31.725789:42.962314:32.628511 | ||
}} | }} |
Revision as of 19:35, 16 April 2012
recognized by
- VSX2 ( EntrezGene:338917 )
- VSX1 ( EntrezGene:30813 )
(data source: http://www.swissregulon.unibas.ch/)
Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Motif Activities (MARA) on Phase1 data
hg19
Chart |
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Sample of clicked point: |
mm9
Z-value table | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Chart |
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Sample of clicked point: |
GOStat results on predicted Motif target
hg19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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