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FF:1556-45F2

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Name:pancreas, embryo E15
Species:Mouse (Mus musculus)
Library ID:CNhs11042
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainDBA/2
tissuepancreas
dev stage15 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00005490
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11042 CAGE DRX009056 DRR009930
Accession ID Mm9

Library idBAMCTSS
CNhs11042 DRZ001355 DRZ002738
Accession ID Mm10

Library idBAMCTSS
CNhs11042 DRZ012705 DRZ014088
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sample
Ranked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sample
Ranked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs11042

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.115
1001 0.0159
1002 0.195
1003 -0.0969
1004 0
1005 -0.0389
1006 -0.143
1007 0.0212
1008 0
1009 -0.0754
101 0.0901
1010 1.064
1011 -0.0439
1012 0
1013 0.171
1014 0.28
1015 0.285
1016 -0.016
1017 0
1018 0
1019 0
102 0
1020 0
1021 0.0247
1022 0
1023 0
1024 -0.0899
1025 0.28
1026 0
1027 -0.048
1028 0
1029 -0.0138
103 0.133
1030 0
1031 0.204
1032 -0.0689
1033 0.0242
1034 0.115
1035 0
1036 0.217
1037 0
1038 -0.0184
1039 0.0495
104 0
1040 0.0282
1041 0



Repeat families with enriched expression in this sample
Summary:Ranked list of repeat family expression in this sample relative to

the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA



link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs
Summary:Association of JASPAR motif to the promoter expression in this

sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon



link to dataset.
data

library id: CNhs11042
Jaspar motif P-value
MA0002.2 0.0122
MA0003.1 0.718
MA0004.1 0.0451
MA0006.1 0.52
MA0007.1 0.135
MA0009.1 0.725
MA0014.1 0.886
MA0017.1 0.816
MA0018.2 0.0362
MA0019.1 0.678
MA0024.1 2.95834e-8
MA0025.1 0.00257
MA0027.1 0.107
MA0028.1 6.46695e-5
MA0029.1 0.0921
MA0030.1 0.18
MA0031.1 0.138
MA0035.2 0.531
MA0038.1 0.722
MA0039.2 0.918
MA0040.1 0.0701
MA0041.1 0.278
MA0042.1 0.582
MA0043.1 0.135
MA0046.1 4.1104e-34
MA0047.2 0.163
MA0048.1 0.0149
MA0050.1 1.88758e-4
MA0051.1 1.83347e-5
MA0052.1 1.44208e-7
MA0055.1 3.87029e-5
MA0057.1 0.999
MA0058.1 0.0393
MA0059.1 9.62342e-6
MA0060.1 2.83914e-9
MA0061.1 0.936
MA0062.2 0.00113
MA0065.2 0.479
MA0066.1 0.786
MA0067.1 0.0257
MA0068.1 0.661
MA0069.1 0.705
MA0070.1 0.527
MA0071.1 0.797
MA0072.1 0.267
MA0073.1 0.921
MA0074.1 0.238
MA0076.1 6.46382e-4
MA0077.1 0.634
MA0078.1 0.735
MA0079.2 0.525
MA0080.2 7.87469e-5
MA0081.1 0.0554
MA0083.1 0.00512
MA0084.1 0.37
MA0087.1 0.315
MA0088.1 0.0698
MA0090.1 0.287
MA0091.1 0.00239
MA0092.1 0.55
MA0093.1 0.0539
MA0099.2 6.24194e-5
MA0100.1 0.213
MA0101.1 0.628
MA0102.2 0.00151
MA0103.1 6.12214e-4
MA0104.2 0.0102
MA0105.1 0.211
MA0106.1 0.689
MA0107.1 0.14
MA0108.2 0.462
MA0111.1 0.327
MA0112.2 0.346
MA0113.1 0.676
MA0114.1 0.927
MA0115.1 0.732
MA0116.1 0.258
MA0117.1 0.0484
MA0119.1 0.343
MA0122.1 0.713
MA0124.1 0.888
MA0125.1 0.672
MA0131.1 0.0448
MA0135.1 0.725
MA0136.1 0.0186
MA0137.2 0.753
MA0138.2 0.00819
MA0139.1 0.156
MA0140.1 0.0921
MA0141.1 0.427
MA0142.1 0.0499
MA0143.1 0.879
MA0144.1 0.893
MA0145.1 0.838
MA0146.1 0.446
MA0147.1 2.59441e-4
MA0148.1 0.41
MA0149.1 0.538
MA0150.1 6.7415e-4
MA0152.1 0.576
MA0153.1 1.2e-16
MA0154.1 0.32
MA0155.1 0.191
MA0156.1 0.929
MA0157.1 0.433
MA0159.1 0.558
MA0160.1 0.967
MA0162.1 0.314
MA0163.1 9.04564e-4
MA0164.1 0.727
MA0258.1 0.684
MA0259.1 0.0629



FANTOM5 phase1 novel unique motifs
Summary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in

169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon



link to dataset.
data

library id: CNhs11042
Novel motif P-value
1 0.947
10 0.241
100 0.251
101 0.425
102 0.577
103 0.458
104 0.506
105 0.62
106 0.581
107 0.144
108 0.66
109 0.0603
11 0.684
110 0.135
111 0.887
112 0.678
113 0.0494
114 0.236
115 0.795
116 0.481
117 0.114
118 0.413
119 0.507
12 0.47
120 0.381
121 0.115
122 0.837
123 0.00955
124 0.0638
125 0.899
126 0.127
127 0.162
128 0.509
129 0.0325
13 3.07162e-5
130 0.677
131 0.775
132 0.79
133 0.654
134 0.0469
135 0.371
136 0.0697
137 0.869
138 0.0643
139 0.0417
14 0.312
140 0.805
141 0.515
142 0.384
143 0.164
144 0.292
145 0.19
146 0.891
147 0.198
148 0.974
149 0.655
15 0.202
150 0.433
151 0.209
152 0.314
153 0.543
154 0.644
155 0.857
156 1.86543e-5
157 0.485
158 0.793
159 0.131
160 0.211
161 0.062
162 0.164
163 0.209
164 0.708
165 0.71
166 0.316
167 0.687
168 0.552
169 0.411
17 0.585
18 0.317
19 0.299
2 0.163
20 0.135
21 0.761
22 0.982
23 0.0175
24 0.0505
25 0.526
26 0.0325
27 0.629
28 0.0431
29 0.188
3 0.544
30 0.594
31 0.68
32 0.895
33 0.193
34 0.958
35 0.762
36 0.139
37 0.365
38 0.695
39 0.12
4 0.362
40 0.067
41 0.0966
42 0.509
43 0.303
44 0.816
45 0.47
46 0.759
47 0.837
48 0.866
49 0.305
5 0.252
50 0.285
51 0.977
52 0.912
53 0.433
54 0.386
55 0.69
56 0.781
57 0.743
58 0.953
59 0.969
6 0.829
60 0.884
61 0.137
62 0.37
63 0.826
64 0.557
65 0.989
66 0.291
67 0.528
68 0.19
69 0.825
7 0.318
70 0.0732
71 0.057
72 0.51
73 0.138
74 0.39
75 0.332
76 0.201
77 0.941
78 0.691
79 0.294
8 0.15
80 0.0935
81 0.0874
82 0.848
83 0.577
84 0.0217
85 0.369
86 0.729
87 0.252
88 0.951
89 0.807
9 0.862
90 0.882
91 0.845
92 0.936
93 0.434
94 0.159
95 0.0461
96 0.92
97 0.61
98 0.619
99 0.289



de novo motifs identified by HOMER in promoters active in this sample
Summary:The result of HOMER in this sample is shown.
Analyst:NA

library id: CNhs11042


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)
Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji



link to source data

data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000298 (mouse embryonic day 15 sample)
0011257 (mouse pancreas- embryo E15 sample)

Ancestor terms (development)
Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship

Analyst: Hideya Kawaji

link to source data

data


FF:0000294 (mouse embryonic day 11 sample)